Wall clock time and date at job start Mon Mar 30 2020 00:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 117.00106 * 2 1 4 4 O 1.20828 * 119.99543 * 0.02562 * 3 2 1 5 5 C 1.50691 * 119.99876 * 179.97438 * 3 2 1 6 6 C 1.54419 * 129.01257 * 179.97438 * 5 3 2 7 7 C 1.54409 * 78.89435 * 180.64588 * 6 5 3 8 8 N 1.46901 * 129.01178 * 180.64253 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46962 * 34.99990 * 9 8 7 11 11 C 1.52999 * 109.47094 * 274.99984 * 9 8 7 12 12 C 1.53000 * 109.47134 * 155.00327 * 9 8 7 13 13 C 1.53006 * 109.46726 * 295.00113 * 12 9 8 14 14 C 1.50703 * 109.46644 * 180.02562 * 13 12 9 15 15 H 1.07991 * 120.00525 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99602 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99986 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99843 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47038 * 59.99853 * 18 16 14 20 20 H 1.48497 * 109.47172 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46865 * 299.99883 * 18 16 14 22 22 C 1.54894 * 84.49202 * 43.15481 * 7 6 5 23 23 C 1.54886 * 84.49583 * 318.13663 * 7 6 5 24 24 H 1.08997 * 109.47223 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47048 * 300.00235 * 1 2 3 26 26 H 1.08992 * 109.47049 * 59.99682 * 1 2 3 27 27 H 1.09004 * 114.92749 * 68.15779 * 6 5 3 28 28 H 1.09001 * 114.98989 * 293.13683 * 6 5 3 29 29 H 1.00901 * 111.00067 * 303.95472 * 8 7 6 30 30 H 1.09006 * 109.47163 * 60.00429 * 11 9 8 31 31 H 1.08999 * 109.47123 * 179.97438 * 11 9 8 32 32 H 1.08997 * 109.47624 * 300.00377 * 11 9 8 33 33 H 1.08994 * 109.47174 * 54.99833 * 12 9 8 34 34 H 1.08993 * 109.47332 * 175.00515 * 12 9 8 35 35 H 1.09003 * 109.47097 * 299.99468 * 13 12 9 36 36 H 1.08997 * 109.47291 * 60.00410 * 13 12 9 37 37 H 0.96998 * 119.99555 * 179.97438 * 17 16 14 38 38 H 1.09005 * 114.97729 * 69.39315 * 22 7 6 39 39 H 1.08999 * 114.97548 * 204.55876 * 22 7 6 40 40 H 1.09008 * 114.97760 * 155.43371 * 23 7 6 41 41 H 1.08997 * 114.97930 * 290.60405 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.4743 2.5239 0.0002 7 6 5.5249 1.3924 -0.0157 8 7 6.9906 1.4914 -0.0151 9 6 7.6082 0.1587 -0.0341 10 1 6.9969 -0.5166 -0.6329 11 6 7.7093 -0.3771 1.3954 12 6 9.0086 0.2542 -0.6431 13 6 8.8988 0.6705 -2.1113 14 6 10.2781 0.7640 -2.7113 15 1 11.1461 0.5485 -2.1060 16 6 10.4318 1.1247 -4.0333 17 7 9.3747 1.3867 -4.7706 18 14 12.1414 1.2399 -4.7772 19 1 12.8111 -0.0824 -4.6859 20 1 12.0349 1.6441 -6.2022 21 1 12.9372 2.2502 -4.0348 22 6 4.5904 0.7423 -1.0661 23 6 4.5914 0.7139 1.0173 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.4466 3.1123 0.9173 28 1 4.4314 3.1240 -0.9088 29 1 7.3155 2.0513 -0.7891 30 1 6.7117 -0.4452 1.8293 31 1 8.1672 -1.3661 1.3812 32 1 8.3206 0.2982 1.9942 33 1 9.5921 0.9959 -0.0978 34 1 9.5007 -0.7160 -0.5765 35 1 8.3153 -0.0712 -2.6567 36 1 8.4067 1.6408 -2.1781 37 1 9.4829 1.6408 -5.7004 38 1 4.5529 1.2537 -2.0280 39 1 4.6715 -0.3417 -1.1460 40 1 4.6725 -0.3721 1.0674 41 1 4.5548 1.1987 1.9928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:51 Heat of formation + Delta-G solvation = -19.827639 kcal Electronic energy + Delta-G solvation = -20439.065574 eV Core-core repulsion = 17321.502104 eV Total energy + Delta-G solvation = -3117.563471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.16221 -41.11224 -37.95600 -37.56816 -35.04293 -32.12627 -30.50344 -29.19881 -27.17842 -26.82286 -26.65751 -25.87588 -23.35610 -21.79595 -20.93371 -19.50375 -18.56763 -18.46667 -17.99746 -17.45552 -16.55841 -16.41801 -15.90636 -15.45982 -15.26329 -14.67339 -14.59456 -14.42366 -14.30399 -13.85120 -13.36000 -13.19554 -13.10116 -12.84186 -12.78123 -12.72635 -12.34905 -12.27925 -12.23239 -11.88819 -11.87163 -11.70710 -11.62088 -11.39262 -11.32039 -11.17691 -10.91480 -10.52274 -9.41050 -8.18686 -6.28722 0.84943 1.41015 1.43138 1.49707 1.50938 2.41976 2.86013 3.03495 3.14931 3.23139 3.28273 3.38278 3.52674 3.87513 4.14210 4.26629 4.30348 4.35766 4.50226 4.50446 4.55892 4.63703 4.69686 4.79365 4.83317 4.85146 4.89680 4.92411 5.06318 5.12381 5.16940 5.20422 5.26330 5.49584 5.56628 5.73409 5.86561 6.16927 6.27539 6.34161 6.58375 6.87962 7.40330 8.92143 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027353 B = 0.003742 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.397541 B = 7480.176939 C = 8024.221094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.535 3.465 4 O -0.527 6.527 5 C -0.152 4.152 6 C -0.079 4.079 7 C 0.053 3.947 8 N -0.625 5.625 9 C 0.090 3.910 10 H 0.036 0.964 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.027 3.973 14 C -0.542 4.542 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.960 3.040 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.268 1.268 22 C -0.132 4.132 23 C -0.064 4.064 24 H 0.135 0.865 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.349 0.651 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.061 0.939 35 H -0.015 1.015 36 H -0.001 1.001 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -3.966 12.536 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.378 3.622 4 O -0.416 6.416 5 C -0.154 4.154 6 C -0.117 4.117 7 C -0.041 4.041 8 N -0.255 5.255 9 C -0.019 4.019 10 H 0.054 0.946 11 C -0.189 4.189 12 C -0.142 4.142 13 C -0.011 4.011 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.785 3.215 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.193 1.193 22 C -0.173 4.173 23 C -0.102 4.102 24 H 0.153 0.847 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.171 0.829 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.004 0.996 36 H 0.018 0.982 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.366 -3.563 13.054 19.736 hybrid contribution 0.271 0.110 -2.012 2.033 sum -14.096 -3.453 11.042 18.236 Atomic orbital electron populations 1.23654 0.74023 1.06084 1.02854 1.86497 1.25436 1.31906 1.83295 1.21411 0.88352 0.81338 0.71068 1.90656 1.66906 1.37437 1.46637 1.23222 0.86545 1.02258 1.03421 1.23902 0.90229 0.94308 1.03272 1.23782 0.87212 0.97029 0.96037 1.60158 1.00551 1.15041 1.49786 1.21537 0.94283 0.88629 0.97419 0.94606 1.21777 1.02355 1.00437 0.94376 1.21677 0.95537 1.01085 0.95852 1.19010 0.95337 0.94570 0.92133 1.21678 0.94140 1.46011 0.96216 0.92310 1.25921 1.00789 0.94982 0.97930 1.70076 1.31070 1.47851 1.08105 0.85576 0.79824 0.78957 0.77153 1.19288 1.21068 1.19253 1.25215 0.93438 1.01593 0.97016 1.24072 0.88399 1.01259 0.96439 0.84687 0.91314 0.91906 0.88694 0.90845 0.82857 0.91641 0.91728 0.92225 0.92373 0.92075 0.99633 0.98244 0.92929 0.91471 0.89584 0.88656 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.81 10.57 -51.46 -0.54 -8.35 16 3 C 0.53 13.88 8.07 71.23 0.57 14.45 16 4 O -0.53 -16.09 16.84 21.96 0.37 -15.72 16 5 C -0.15 -3.78 3.61 -62.86 -0.23 -4.01 16 6 C -0.08 -2.04 7.78 30.60 0.24 -1.80 16 7 C 0.05 1.44 3.61 -7.23 -0.03 1.42 16 8 N -0.62 -19.71 6.66 -504.08 -3.36 -23.07 16 9 C 0.09 2.87 2.65 44.91 0.12 2.99 16 10 H 0.04 1.20 7.52 -2.38 -0.02 1.18 16 11 C -0.13 -3.30 9.41 71.98 0.68 -2.62 16 12 C -0.10 -4.04 4.74 30.60 0.15 -3.90 16 13 C 0.03 1.35 4.80 29.85 0.14 1.49 16 14 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 15 H 0.06 3.16 7.74 -2.92 -0.02 3.13 16 16 C 0.00 0.10 5.46 84.66 0.46 0.56 16 17 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 18 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C -0.13 -3.63 7.59 31.90 0.24 -3.39 16 23 C -0.06 -1.40 6.55 31.08 0.20 -1.19 16 24 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 0.94 8.13 -2.38 -0.02 0.92 16 26 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.09 2.20 7.94 -2.38 -0.02 2.18 16 28 H 0.07 1.98 7.91 -2.39 -0.02 1.96 16 29 H 0.35 12.69 6.55 -89.69 -0.59 12.10 16 30 H 0.06 1.42 6.30 -2.38 -0.02 1.40 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 36 H 0.00 -0.03 6.42 -2.39 -0.02 -0.05 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.07 2.01 7.91 -2.38 -0.02 1.99 16 39 H 0.09 2.28 7.93 -2.39 -0.02 2.26 16 40 H 0.10 1.89 7.53 -2.38 -0.02 1.87 16 41 H 0.10 1.84 7.93 -2.39 -0.02 1.82 16 Total: -1.00 -65.23 337.29 3.18 -62.05 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.42 Total: 19.21 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.98 Total: -24.48 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -3.07 Total: -78.69 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.17 Total: -24.07 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.23 3.18 -62.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.221 kcal (2) G-P(sol) polarization free energy of solvation -65.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds