Wall clock time and date at job start Mon Mar 30 2020 00:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34220 * 117.00449 * 2 1 4 4 O 1.20830 * 119.99839 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00447 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.48890 * 325.38693 * 5 3 2 7 7 C 1.53002 * 117.44416 * 110.77043 * 5 3 2 8 8 H 1.08997 * 120.23411 * 356.19554 * 7 5 3 9 9 C 1.54382 * 118.12511 * 199.31724 * 7 5 3 10 10 N 1.48558 * 104.59291 * 272.76789 * 9 7 5 11 11 C 1.46902 * 110.99922 * 159.04205 * 10 9 7 12 12 H 1.09002 * 109.46855 * 300.87835 * 11 10 9 13 13 C 1.53001 * 109.47408 * 180.87471 * 11 10 9 14 14 C 1.53004 * 109.47077 * 60.87269 * 11 10 9 15 15 C 1.52994 * 109.47290 * 185.37478 * 14 11 10 16 16 C 1.50698 * 109.47202 * 183.13602 * 15 14 11 17 17 H 1.08001 * 119.99946 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99967 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99828 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00056 * 359.97438 * 18 16 15 21 21 H 1.48492 * 109.47422 * 90.00105 * 20 18 16 22 22 H 1.48501 * 109.47060 * 210.00271 * 20 18 16 23 23 H 1.48504 * 109.47198 * 329.99946 * 20 18 16 24 24 C 1.48562 * 104.21979 * 39.48897 * 10 9 7 25 25 C 1.52992 * 117.44658 * 180.02562 * 5 3 2 26 26 H 1.09005 * 120.23618 * 3.80781 * 25 5 3 27 27 H 1.09003 * 109.47084 * 59.99963 * 1 2 3 28 28 H 1.08999 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46808 * 299.99980 * 1 2 3 30 30 H 1.09002 * 110.40746 * 153.99634 * 9 7 5 31 31 H 1.08998 * 110.41207 * 31.54957 * 9 7 5 32 32 H 1.09000 * 109.47070 * 180.02562 * 13 11 10 33 33 H 1.08993 * 109.46909 * 300.00331 * 13 11 10 34 34 H 1.08999 * 109.46840 * 60.00328 * 13 11 10 35 35 H 1.08995 * 109.47205 * 305.37889 * 14 11 10 36 36 H 1.09003 * 109.46556 * 65.37612 * 14 11 10 37 37 H 1.09009 * 109.47089 * 303.13543 * 15 14 11 38 38 H 1.08997 * 109.47221 * 63.13228 * 15 14 11 39 39 H 0.97001 * 119.99963 * 179.97438 * 19 18 16 40 40 H 1.09002 * 110.41377 * 79.29564 * 24 10 9 41 41 H 1.09006 * 110.41105 * 201.61417 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0775 0.4905 0.5579 7 6 4.2449 1.7928 -1.2703 8 1 3.6504 2.0300 -2.1525 9 6 5.7395 1.4685 -1.4809 10 7 6.4619 2.5652 -0.7863 11 6 7.8383 2.1666 -0.4625 12 1 7.8200 1.2834 0.1761 13 6 8.5419 3.3111 0.2696 14 6 8.5937 1.8465 -1.7540 15 6 9.9825 1.3038 -1.4113 16 6 10.7547 1.0611 -2.6825 17 1 10.3001 1.2723 -3.6391 18 6 12.0411 0.5683 -2.6243 19 7 12.7147 0.3560 -3.7336 20 14 12.8270 0.2023 -0.9697 21 1 12.5370 -1.2019 -0.5836 22 1 14.2962 0.3958 -1.0659 23 1 12.2728 1.1222 0.0560 24 6 5.6706 2.7982 0.4492 25 6 4.1996 2.6675 0.0001 26 1 3.5713 3.5560 0.0634 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 5.9821 1.4669 -2.5436 31 1 5.9867 0.5064 -1.0321 32 1 9.5632 3.0154 0.5094 33 1 8.5600 4.1941 -0.3690 34 1 8.0037 3.5390 1.1897 35 1 8.0412 1.0982 -2.3222 36 1 8.6949 2.7536 -2.3500 37 1 10.5145 2.0295 -0.7960 38 1 9.8815 0.3672 -0.8630 39 1 13.6199 0.0096 -3.6926 40 1 5.9070 2.0443 1.2001 41 1 5.8629 3.7971 0.8410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:43 Heat of formation + Delta-G solvation = -54.800410 kcal Electronic energy + Delta-G solvation = -20218.161194 eV Core-core repulsion = 17099.081190 eV Total energy + Delta-G solvation = -3119.080004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13618 -39.75429 -36.95471 -36.04887 -33.26251 -31.62314 -29.49095 -28.66689 -28.13337 -25.66349 -24.98582 -22.56759 -20.99271 -20.52570 -20.19528 -19.31514 -18.13777 -17.20186 -16.77625 -16.62007 -15.78334 -14.97473 -14.50879 -14.11245 -14.08322 -13.80326 -13.57161 -13.07229 -12.89243 -12.78854 -12.51718 -12.37553 -12.20829 -11.72968 -11.53932 -11.31318 -11.23609 -11.14926 -10.79871 -10.76690 -10.64267 -10.43567 -10.28866 -9.93479 -9.65838 -9.53072 -9.13346 -8.52444 -8.34474 -6.03152 -4.00691 1.74096 2.26478 3.30332 3.31832 3.38033 3.40946 3.94384 4.26559 4.35825 4.45609 4.53422 4.71840 4.76054 4.83181 4.91610 5.00476 5.17164 5.30147 5.33127 5.37506 5.43044 5.48860 5.68426 5.77530 5.83098 5.93650 5.98145 6.04973 6.12689 6.23675 6.46065 6.51575 6.55730 6.83771 6.99545 7.21347 7.35517 7.42873 7.46006 7.81560 8.55992 9.02631 9.59494 11.10498 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.034438 B = 0.003357 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.859076 B = 8339.253676 C = 8632.877498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.497 3.503 4 O -0.505 6.505 5 C -0.143 4.143 6 H 0.133 0.867 7 C -0.127 4.127 8 H 0.125 0.875 9 C 0.061 3.939 10 N -0.503 5.503 11 C 0.068 3.932 12 H 0.039 0.961 13 C -0.142 4.142 14 C -0.094 4.094 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.060 3.940 25 C -0.125 4.125 26 H 0.131 0.869 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.020 0.980 38 H 0.007 0.993 39 H 0.262 0.738 40 H 0.047 0.953 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.351 1.184 10.093 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.340 3.660 4 O -0.393 6.393 5 C -0.162 4.162 6 H 0.150 0.850 7 C -0.146 4.146 8 H 0.143 0.857 9 C -0.066 4.066 10 N -0.228 5.228 11 C -0.040 4.040 12 H 0.057 0.943 13 C -0.200 4.200 14 C -0.132 4.132 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.068 4.068 25 C -0.144 4.144 26 H 0.149 0.851 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.330 1.910 9.689 23.505 hybrid contribution 0.197 -1.069 1.307 1.700 sum -21.133 0.840 10.996 23.838 Atomic orbital electron populations 1.23302 0.76051 1.03856 1.02621 1.86503 1.23524 1.33079 1.83926 1.22512 0.90230 0.81284 0.71966 1.90669 1.66867 1.36437 1.45341 1.21900 0.88039 1.00939 1.05368 0.84970 1.23510 0.97097 1.02411 0.91591 0.85689 1.22692 0.88674 0.93579 1.01658 1.65655 1.01959 1.37472 1.17671 1.22040 0.87153 0.96415 0.98372 0.94313 1.21858 1.00467 0.98611 0.99044 1.21530 0.96632 1.00892 0.94142 1.19618 0.92462 0.95396 0.97631 1.21147 0.98510 1.42957 0.92985 0.91048 1.25037 0.97175 0.95100 0.96255 1.69918 1.11599 1.45982 1.26881 0.86783 0.78396 0.79033 0.85089 1.20406 1.21433 1.19007 1.22683 0.89097 1.02305 0.92673 1.23511 0.97164 0.92636 1.01080 0.85128 0.91773 0.87908 0.91839 0.88401 0.92953 0.91398 0.91803 0.93748 0.92835 0.91792 0.96225 0.97448 0.92784 0.93452 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.61 10.56 -39.23 -0.41 -4.02 16 3 C 0.50 5.65 7.74 36.01 0.28 5.93 16 4 O -0.51 -6.85 16.11 -18.75 -0.30 -7.16 16 5 C -0.14 -1.48 5.84 -91.77 -0.54 -2.02 16 6 H 0.13 1.24 8.14 -51.93 -0.42 0.81 16 7 C -0.13 -1.40 6.83 -89.21 -0.61 -2.01 16 8 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 9 C 0.06 0.78 5.18 -2.18 -0.01 0.76 16 10 N -0.50 -6.94 5.20 -222.02 -1.15 -8.09 16 11 C 0.07 1.07 1.90 -67.71 -0.13 0.94 16 12 H 0.04 0.61 7.98 -51.93 -0.41 0.20 16 13 C -0.14 -2.11 8.90 37.16 0.33 -1.77 16 14 C -0.09 -1.82 4.61 -26.73 -0.12 -1.95 16 15 C -0.01 -0.31 3.87 -27.89 -0.11 -0.42 16 16 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 20 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 24 C 0.06 0.69 5.30 -2.19 -0.01 0.67 16 25 C -0.13 -1.36 6.55 -89.23 -0.58 -1.94 16 26 H 0.13 1.44 7.84 -51.93 -0.41 1.03 16 27 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.10 1.28 7.55 -51.93 -0.39 0.89 16 31 H 0.05 0.66 7.96 -51.93 -0.41 0.25 16 32 H 0.07 1.08 6.51 -51.93 -0.34 0.74 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.55 7.04 -51.93 -0.37 0.19 16 35 H 0.05 1.03 6.70 -51.93 -0.35 0.68 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.46 5.49 -51.92 -0.29 0.17 16 38 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.05 0.52 7.92 -51.93 -0.41 0.11 16 41 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -31.92 329.97 -8.37 -40.29 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.71 Total: -2.03 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -0.87 Total: -13.73 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.38 Total: -35.30 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -0.72 Total: -11.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.92 -8.37 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.510 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds