Wall clock time and date at job start Mon Mar 30 2020 00:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.42151 * 2 1 4 4 O 1.44423 * 110.37122 * 237.68452 * 2 1 3 5 5 C 1.44421 * 105.27708 * 200.65901 * 4 2 1 6 6 C 1.54480 * 104.80295 * 40.51730 * 5 4 2 7 7 C 1.54487 * 110.36886 * 122.30919 * 2 1 3 8 8 H 1.08998 * 110.62440 * 261.50785 * 7 2 1 9 9 C 1.50692 * 110.51248 * 24.16024 * 7 2 1 10 10 O 1.21284 * 119.99927 * 79.93435 * 9 7 2 11 11 N 1.34778 * 120.00159 * 259.93900 * 9 7 2 12 12 C 1.46504 * 119.99984 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.41191 * 34.99093 * 12 11 9 14 14 C 1.52954 * 109.41487 * 154.85556 * 12 11 9 15 15 C 1.53226 * 109.40699 * 183.70143 * 14 12 11 16 16 C 1.51275 * 108.53417 * 305.37110 * 15 14 12 17 17 C 1.37877 * 120.84814 * 231.32342 * 16 15 14 18 18 N 1.31509 * 120.00188 * 359.97438 * 17 16 15 19 19 Si 1.86804 * 119.99823 * 180.02562 * 17 16 15 20 20 H 1.48509 * 109.46921 * 60.00083 * 19 17 16 21 21 H 1.48496 * 109.47089 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47018 * 300.00384 * 19 17 16 23 23 C 1.51268 * 118.29815 * 51.34839 * 16 15 14 24 24 C 1.52963 * 109.40805 * 275.13627 * 12 11 9 25 25 H 1.09008 * 109.46707 * 291.51265 * 1 2 3 26 26 H 1.09000 * 109.47175 * 51.50633 * 1 2 3 27 27 H 1.08989 * 109.47677 * 171.51232 * 1 2 3 28 28 H 1.08999 * 110.37331 * 281.67960 * 5 4 2 29 29 H 1.09004 * 110.37312 * 159.34181 * 5 4 2 30 30 H 1.09004 * 110.50866 * 217.38040 * 6 5 4 31 31 H 1.09000 * 110.51718 * 94.66520 * 6 5 4 32 32 H 0.96997 * 119.99548 * 359.97438 * 11 9 7 33 33 H 1.09004 * 109.47928 * 303.68481 * 14 12 11 34 34 H 1.09006 * 109.48323 * 63.71910 * 14 12 11 35 35 H 1.08999 * 109.62501 * 65.08524 * 15 14 12 36 36 H 1.08996 * 109.62941 * 185.46486 * 15 14 12 37 37 H 0.97002 * 119.99939 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.62441 * 68.36669 * 23 16 15 39 39 H 1.09000 * 109.62263 * 188.74377 * 23 16 15 40 40 H 1.08998 * 109.48093 * 296.27430 * 24 12 11 41 41 H 1.08997 * 109.48366 * 56.32131 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0327 -0.7238 -1.1442 5 6 3.3873 -1.0873 -0.7994 6 6 3.3177 -1.5058 0.6860 7 6 2.0677 -0.7741 1.2240 8 1 2.3426 -0.0857 2.0232 9 6 1.0443 -1.7665 1.7125 10 8 0.9144 -2.8316 1.1472 11 7 0.2732 -1.4704 2.7775 12 6 -0.7214 -2.4355 3.2527 13 1 -0.3382 -3.4469 3.1175 14 6 -0.9985 -2.1908 4.7369 15 6 -1.9684 -3.2573 5.2563 16 6 -3.2031 -3.2509 4.3823 17 6 -4.4621 -3.1659 4.9379 18 7 -4.6010 -3.0896 6.2434 19 14 -5.9707 -3.1606 3.8362 20 1 -6.0112 -4.4176 3.0463 21 1 -7.1939 -3.0613 4.6724 22 1 -5.9062 -1.9985 2.9142 23 6 -3.0211 -3.3407 2.8833 24 6 -2.0136 -2.2699 2.4512 25 1 -0.3633 0.3769 0.9562 26 1 -0.3633 0.6396 -0.8043 27 1 -0.3634 -1.0163 -0.1517 28 1 4.0525 -0.2326 -0.9221 29 1 3.7240 -1.9225 -1.4135 30 1 4.2108 -1.1774 1.2175 31 1 3.1954 -2.5854 0.7733 32 1 0.3774 -0.6187 3.2298 33 1 -0.0640 -2.2465 5.2952 34 1 -1.4411 -1.2031 4.8662 35 1 -1.4932 -4.2373 5.2115 36 1 -2.2443 -3.0310 6.2862 37 1 -5.4868 -3.0295 6.6342 38 1 -2.6434 -4.3284 2.6189 39 1 -3.9767 -3.1694 2.3876 40 1 -2.4316 -1.2804 2.6357 41 1 -1.7991 -2.3819 1.3884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178963104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:34 Heat of formation + Delta-G solvation = -127.621983 kcal Electronic energy + Delta-G solvation = -21423.397643 eV Core-core repulsion = 18301.159859 eV Total energy + Delta-G solvation = -3122.237784 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63899 -39.70519 -38.23100 -35.37887 -33.83940 -32.97730 -32.45200 -31.48039 -29.21205 -27.21699 -24.55656 -23.35983 -23.05874 -22.77665 -21.32077 -20.58660 -18.47879 -17.92009 -17.40737 -16.93763 -16.47746 -16.44386 -16.16869 -15.72975 -15.02609 -14.87183 -14.53900 -14.24862 -13.94853 -13.78995 -13.59396 -13.31877 -13.23455 -12.87566 -12.77771 -12.66758 -12.52049 -12.26312 -12.02294 -11.94487 -11.89572 -11.81855 -11.61052 -11.05378 -10.82219 -10.72194 -10.58182 -10.46326 -9.87973 -8.19439 -6.13155 1.37395 1.39692 1.46995 1.66766 2.25796 2.39021 2.94234 3.08946 3.48962 3.66990 3.88305 4.04761 4.14622 4.19525 4.25192 4.38435 4.39442 4.48551 4.50984 4.64434 4.69356 4.83883 4.87102 4.92082 4.94178 4.96446 5.05733 5.13191 5.15613 5.17661 5.21458 5.26349 5.52580 5.57863 5.69782 5.74886 5.81344 5.92478 6.33231 6.70136 6.91773 7.38003 7.45122 8.91244 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035238 B = 0.004745 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.409463 B = 5899.896959 C = 6298.988012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.089 3.911 3 H 0.116 0.884 4 O -0.400 6.400 5 C 0.044 3.956 6 C -0.141 4.141 7 C -0.140 4.140 8 H 0.142 0.858 9 C 0.519 3.481 10 O -0.585 6.585 11 N -0.712 5.712 12 C 0.167 3.833 13 H 0.050 0.950 14 C -0.099 4.099 15 C 0.008 3.992 16 C -0.500 4.500 17 C 0.029 3.971 18 N -0.926 5.926 19 Si 0.938 3.062 20 H -0.274 1.274 21 H -0.290 1.290 22 H -0.264 1.264 23 C -0.013 4.013 24 C -0.103 4.103 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.413 0.587 33 H 0.060 0.940 34 H 0.060 0.940 35 H -0.006 1.006 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.010 0.990 39 H 0.026 0.974 40 H 0.058 0.942 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.540 10.869 -9.086 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.133 0.867 4 O -0.320 6.320 5 C -0.032 4.032 6 C -0.179 4.179 7 C -0.161 4.161 8 H 0.160 0.840 9 C 0.307 3.693 10 O -0.465 6.465 11 N -0.363 5.363 12 C 0.063 3.937 13 H 0.068 0.932 14 C -0.138 4.138 15 C -0.030 4.030 16 C -0.519 4.519 17 C -0.170 4.170 18 N -0.566 5.566 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.189 1.189 23 C -0.051 4.051 24 C -0.142 4.142 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.249 0.751 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.013 0.987 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.200 10.081 -9.524 20.576 hybrid contribution -1.175 -0.227 0.178 1.209 sum 14.025 9.855 -9.346 19.524 Atomic orbital electron populations 1.21971 0.94057 1.01791 1.03746 1.23049 0.94895 0.96085 0.82841 0.86662 1.89156 1.28859 1.75143 1.38836 1.23570 0.83846 1.01006 0.94759 1.22967 0.97125 1.00949 0.96823 1.22935 0.94664 0.97460 1.01062 0.84014 1.20892 0.81693 0.87524 0.79220 1.90684 1.70793 1.27427 1.57624 1.46193 1.37336 1.21214 1.31512 1.20570 0.87273 0.91805 0.94085 0.93159 1.21688 0.98585 1.00482 0.93016 1.19298 0.93154 0.93262 0.97264 1.20551 0.91993 1.48347 0.91005 1.25495 1.00829 0.94789 0.95856 1.69929 1.23884 1.51424 1.11352 0.85884 0.79327 0.79271 0.79054 1.19950 1.21634 1.18937 1.19613 0.95213 0.94984 0.95258 1.21745 0.95672 0.99794 0.96968 0.89620 0.90651 0.94810 0.89092 0.89218 0.86604 0.92215 0.75067 0.92147 0.92132 0.98717 0.94646 0.92637 0.97178 0.95595 0.92319 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.55 71.98 0.62 -3.09 16 2 C 0.09 1.77 3.83 31.10 0.12 1.89 16 3 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 4 O -0.40 -10.19 11.34 -148.98 -1.69 -11.88 16 5 C 0.04 0.79 7.63 72.49 0.55 1.35 16 6 C -0.14 -2.57 6.59 31.61 0.21 -2.37 16 7 C -0.14 -2.71 3.43 -10.52 -0.04 -2.75 16 8 H 0.14 1.56 8.12 -2.39 -0.02 1.54 16 9 C 0.52 15.43 4.75 87.65 0.42 15.85 16 10 O -0.59 -23.68 15.41 -3.04 -0.05 -23.72 16 11 N -0.71 -20.12 4.83 -442.66 -2.14 -22.26 16 12 C 0.17 6.30 2.35 44.96 0.11 6.40 16 13 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 14 C -0.10 -3.85 5.40 30.65 0.17 -3.68 16 15 C 0.01 0.41 5.96 30.11 0.18 0.58 16 16 C -0.50 -26.38 5.51 -16.17 -0.09 -26.47 16 17 C 0.03 1.60 5.46 84.66 0.46 2.06 16 18 N -0.93 -53.65 12.73 21.45 0.27 -53.37 16 19 Si 0.94 43.88 26.80 68.60 1.84 45.71 16 20 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 23 C -0.01 -0.60 5.60 30.11 0.17 -0.43 16 24 C -0.10 -4.23 5.50 30.66 0.17 -4.06 16 25 H 0.09 1.75 7.81 -2.38 -0.02 1.73 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.06 7.21 -2.39 -0.02 1.04 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.06 1.50 7.04 -2.39 -0.02 1.48 16 32 H 0.41 8.51 8.58 -92.71 -0.80 7.72 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 35 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.03 1.91 7.08 -2.39 -0.02 1.89 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.03 1.21 5.17 -2.39 -0.01 1.20 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -69.88 319.45 1.49 -68.39 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.22 Total: 11.85 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 3.04 Total: -14.71 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.87 Total: -75.64 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.74 Total: -35.60 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.84 Total: 45.71 kcal Total: -69.88 1.49 -68.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178963104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.236 kcal (2) G-P(sol) polarization free energy of solvation -69.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds