Wall clock time and date at job start Mon Mar 30 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45207 * 109.46941 * 2 1 4 4 C 1.34226 * 116.99635 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00770 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99718 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.02040 * 301.39617 * 6 4 3 8 8 C 1.53883 * 110.06977 * 62.81588 * 6 4 3 9 9 C 1.54260 * 106.59609 * 119.30433 * 8 6 4 10 10 C 1.54892 * 104.19900 * 23.61218 * 9 8 6 11 11 H 1.09000 * 110.91535 * 80.44261 * 10 9 8 12 12 N 1.46906 * 110.75345 * 203.74164 * 10 9 8 13 13 C 1.47960 * 110.99928 * 293.32581 * 12 10 9 14 14 C 1.53933 * 86.17994 * 222.41926 * 13 12 10 15 15 C 1.50706 * 113.73587 * 138.07481 * 14 13 12 16 16 H 1.07998 * 119.99503 * 1.90322 * 15 14 13 17 17 C 1.37871 * 120.00434 * 181.89786 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.48191 * 111.06829 * 193.89297 * 12 10 9 24 24 C 1.54268 * 110.03252 * 180.02562 * 6 4 3 25 25 H 1.08997 * 109.47362 * 299.99538 * 1 2 3 26 26 H 1.09000 * 109.47356 * 60.00291 * 1 2 3 27 27 H 1.08998 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47362 * 240.00462 * 2 1 3 29 29 H 1.09000 * 109.47356 * 119.99709 * 2 1 3 30 30 H 1.08998 * 110.02897 * 238.59060 * 8 6 4 31 31 H 1.08994 * 110.02748 * 359.97078 * 8 6 4 32 32 H 1.08999 * 110.48769 * 264.92564 * 9 8 6 33 33 H 1.09004 * 110.48445 * 142.29036 * 9 8 6 34 34 H 1.08996 * 113.76274 * 108.10373 * 13 12 10 35 35 H 1.09001 * 113.85964 * 336.75020 * 13 12 10 36 36 H 1.08997 * 113.73814 * 269.25475 * 14 13 12 37 37 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 38 38 H 1.09008 * 113.75643 * 23.23784 * 23 12 10 39 39 H 1.08996 * 113.82488 * 251.81087 * 23 12 10 40 40 H 1.08993 * 110.48714 * 98.37971 * 24 6 4 41 41 H 1.09002 * 110.59882 * 335.79169 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5707 3.4857 -0.8747 8 6 3.5116 3.6786 1.2851 9 6 4.8186 4.0374 2.0217 10 6 5.8920 4.0534 0.9051 11 1 5.8648 4.9927 0.3526 12 7 7.2297 3.8200 1.4655 13 6 7.6460 4.9458 2.3307 14 6 9.0259 4.8153 1.6611 15 6 9.6605 6.1382 1.3168 16 1 9.1592 7.0602 1.5716 17 6 10.8811 6.1714 0.6765 18 7 11.4942 5.0487 0.3710 19 14 11.6681 7.8111 0.2504 20 1 12.9705 7.5750 -0.4230 21 1 10.7712 8.5692 -0.6585 22 1 11.8882 8.5925 1.4938 23 6 8.2857 4.1580 0.4823 24 6 5.4619 2.8719 0.0001 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9632 4.5865 1.0340 31 1 2.8959 3.0313 1.9094 32 1 5.0561 3.2797 2.7684 33 1 4.7371 5.0200 2.4866 34 1 7.6493 4.7049 3.3937 35 1 7.1371 5.8838 2.1089 36 1 9.7051 4.1415 2.1833 37 1 11.0857 4.1972 0.5925 38 1 7.9634 4.8643 -0.2828 39 1 8.7990 3.2888 0.0712 40 1 5.8494 3.0039 -1.0100 41 1 5.8054 1.9260 0.4189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257049443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:49 Heat of formation + Delta-G solvation = -93.697526 kcal Electronic energy + Delta-G solvation = -20515.060478 eV Core-core repulsion = 17394.293768 eV Total energy + Delta-G solvation = -3120.766709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87841 -40.78867 -38.37742 -37.41050 -34.82733 -32.74762 -31.08238 -30.09242 -27.93328 -26.79405 -25.49748 -24.35568 -23.00303 -21.49723 -20.86552 -20.72325 -18.99411 -18.55648 -17.95035 -17.40681 -16.91891 -16.37627 -16.09374 -15.63469 -15.16866 -14.98974 -14.72121 -14.41296 -13.98997 -13.75604 -13.59438 -13.34794 -13.10694 -12.97184 -12.67634 -12.64451 -12.51493 -12.37343 -12.06023 -11.94961 -11.86816 -11.69046 -11.55588 -11.50402 -11.29697 -11.16649 -10.65054 -10.49731 -9.64802 -8.61393 -6.33603 1.09219 1.55040 1.58986 1.62675 1.81800 2.58618 3.05856 3.17998 3.34420 3.41512 3.79283 3.97169 4.01286 4.06098 4.15743 4.20218 4.31024 4.32623 4.36648 4.39084 4.45073 4.53142 4.63310 4.72241 4.79435 4.82836 4.90747 4.91999 4.99046 5.00693 5.09178 5.12004 5.19673 5.27251 5.41944 5.46744 5.50833 6.06507 6.18558 6.32316 6.61795 6.66489 7.48080 8.77947 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.048291 B = 0.003400 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.682318 B = 8233.519261 C = 8412.777142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.355 6.355 4 C 0.471 3.529 5 O -0.541 6.541 6 C -0.079 4.079 7 H 0.138 0.862 8 C -0.098 4.098 9 C -0.111 4.111 10 C 0.041 3.959 11 H 0.055 0.945 12 N -0.482 5.482 13 C 0.028 3.972 14 C -0.003 4.003 15 C -0.605 4.605 16 H 0.051 0.949 17 C -0.031 4.031 18 N -0.935 5.935 19 Si 1.115 2.885 20 H -0.287 1.287 21 H -0.269 1.269 22 H -0.270 1.270 23 C 0.017 3.983 24 C -0.101 4.101 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.257 0.743 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.580 -4.056 -0.621 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.271 6.271 4 C 0.315 3.685 5 O -0.431 6.431 6 C -0.098 4.098 7 H 0.155 0.845 8 C -0.136 4.136 9 C -0.149 4.149 10 C -0.068 4.068 11 H 0.073 0.927 12 N -0.205 5.205 13 C -0.101 4.101 14 C -0.022 4.022 15 C -0.643 4.643 16 H 0.070 0.930 17 C -0.229 4.229 18 N -0.572 5.572 19 Si 0.936 3.064 20 H -0.213 1.213 21 H -0.194 1.194 22 H -0.195 1.195 23 C -0.113 4.113 24 C -0.139 4.139 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.156 -4.365 -1.046 22.606 hybrid contribution -0.786 -0.634 0.240 1.039 sum -22.942 -5.000 -0.805 23.494 Atomic orbital electron populations 1.21813 0.90025 1.04385 1.03895 1.23309 0.97344 0.79359 1.02340 1.86511 1.23529 1.33531 1.83578 1.24012 0.80689 0.92892 0.70883 1.90663 1.61260 1.44370 1.46800 1.21737 0.94978 0.89333 1.03754 0.84465 1.22042 0.97087 1.01233 0.93194 1.22351 0.93192 1.02366 0.96976 1.23239 0.90583 0.96808 0.96178 0.92667 1.68504 1.01383 1.38885 1.11699 1.23705 0.95880 0.92619 0.97882 1.20496 0.92917 0.95489 0.93322 1.22263 1.07465 0.92625 1.41910 0.93029 1.27293 0.95428 1.06542 0.93640 1.70900 1.41428 0.98642 1.46188 0.82963 0.75501 0.70660 0.77233 1.21267 1.19427 1.19537 1.23911 0.93999 0.97353 0.95992 1.22241 0.92651 0.99171 0.99792 0.91065 0.91049 0.88304 0.91584 0.91711 0.87444 0.90415 0.91947 0.90042 0.90505 0.91628 0.96517 0.93277 0.92855 0.93406 0.91566 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.86 6.19 71.98 0.45 1.30 16 3 O -0.35 -7.52 10.19 -51.38 -0.52 -8.05 16 4 C 0.47 12.10 7.00 71.24 0.50 12.60 16 5 O -0.54 -17.98 15.16 21.96 0.33 -17.65 16 6 C -0.08 -1.76 3.40 -10.81 -0.04 -1.80 16 7 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 8 C -0.10 -1.86 6.44 31.32 0.20 -1.66 16 9 C -0.11 -2.79 5.91 31.67 0.19 -2.60 16 10 C 0.04 1.31 2.17 46.22 0.10 1.41 16 11 H 0.06 1.77 7.77 -2.39 -0.02 1.75 16 12 N -0.48 -19.43 6.04 -874.39 -5.28 -24.71 16 13 C 0.03 1.15 6.99 86.41 0.60 1.75 16 14 C 0.00 -0.16 3.06 -10.89 -0.03 -0.19 16 15 C -0.60 -33.64 8.77 25.60 0.22 -33.42 16 16 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 17 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 18 N -0.94 -57.52 13.65 21.45 0.29 -57.23 16 19 Si 1.11 49.59 29.90 68.60 2.05 51.64 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 C 0.02 0.79 7.27 86.37 0.63 1.42 16 24 C -0.10 -3.03 5.67 31.68 0.18 -2.85 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 29 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.40 7.66 -2.39 -0.02 1.38 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 2.99 8.14 -2.39 -0.02 2.98 16 35 H 0.07 2.60 7.87 -2.39 -0.02 2.58 16 36 H 0.02 0.95 7.69 -2.39 -0.02 0.93 16 37 H 0.26 16.12 7.01 -92.71 -0.65 15.47 16 38 H 0.05 2.52 7.66 -2.38 -0.02 2.50 16 39 H 0.05 2.35 8.14 -2.39 -0.02 2.34 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.42 6.89 -2.39 -0.02 2.40 16 Total: -1.00 -68.61 332.93 2.18 -66.42 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.11 Total: 15.61 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.20 Total: -26.04 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -4.99 Total: -81.94 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.19 Total: -25.69 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -68.61 2.18 -66.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257049443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.274 kcal (2) G-P(sol) polarization free energy of solvation -68.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds