Wall clock time and date at job start Mon Mar 30 2020 00:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47100 * 2 1 4 4 C 1.50704 * 109.46989 * 240.00281 * 2 1 3 5 5 H 1.08001 * 119.99845 * 240.00335 * 4 2 1 6 6 C 1.37880 * 119.99928 * 59.99518 * 4 2 1 7 7 N 1.31516 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99860 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47285 * 90.00314 * 8 6 4 10 10 H 1.48508 * 109.47320 * 210.00275 * 8 6 4 11 11 H 1.48506 * 109.47505 * 330.00328 * 8 6 4 12 12 C 1.50700 * 109.47216 * 120.00517 * 2 1 3 13 13 O 1.21281 * 120.00189 * 119.99782 * 12 2 1 14 14 N 1.34776 * 119.99529 * 299.99474 * 12 2 1 15 15 C 1.47575 * 134.49639 * 0.02562 * 14 12 2 16 16 C 1.53947 * 86.11764 * 204.63711 * 15 14 12 17 17 C 1.47581 * 134.48769 * 179.97438 * 14 12 2 18 18 H 1.09000 * 113.77553 * 269.66290 * 17 14 12 19 19 C 1.52996 * 113.76986 * 41.06547 * 17 14 12 20 20 H 1.09001 * 109.52533 * 281.91582 * 19 17 14 21 21 C 1.53181 * 109.52600 * 161.79277 * 19 17 14 22 22 C 1.53184 * 109.03605 * 183.17684 * 21 19 17 23 23 C 1.53099 * 109.21437 * 56.88267 * 22 21 19 24 24 O 1.42905 * 109.41359 * 302.42711 * 23 22 21 25 25 C 1.42905 * 114.09761 * 61.15983 * 24 23 22 26 26 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46911 * 299.99206 * 1 2 3 28 28 H 1.08994 * 109.47554 * 59.99856 * 1 2 3 29 29 H 0.97005 * 119.99857 * 179.97438 * 7 6 4 30 30 H 1.08998 * 113.77513 * 90.33172 * 15 14 12 31 31 H 1.09002 * 113.76700 * 318.93240 * 15 14 12 32 32 H 1.08994 * 113.74555 * 90.73267 * 16 15 14 33 33 H 1.09002 * 113.74425 * 222.04619 * 16 15 14 34 34 H 1.09003 * 109.53836 * 302.98249 * 21 19 17 35 35 H 1.08994 * 109.54125 * 63.24127 * 21 19 17 36 36 H 1.09000 * 109.46939 * 296.98147 * 22 21 19 37 37 H 1.09000 * 109.57795 * 176.85571 * 22 21 19 38 38 H 1.08994 * 109.47769 * 182.44506 * 23 22 21 39 39 H 1.09000 * 109.47692 * 62.41209 * 23 22 21 40 40 H 1.09002 * 109.47872 * 178.85807 * 25 24 23 41 41 H 1.08994 * 109.49082 * 58.82990 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6308 -1.7564 -3.7121 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 0.9047 0.8838 2.9534 16 6 1.7568 0.7884 4.2320 17 6 2.0087 -0.6777 3.8343 18 1 1.2807 -1.3761 4.2471 19 6 3.4556 -1.1319 4.0366 20 1 3.5783 -2.1421 3.6460 21 6 3.7930 -1.1164 5.5307 22 6 5.2657 -1.4959 5.7143 23 6 6.1391 -0.5293 4.9100 24 8 5.7524 -0.5717 3.5350 25 6 4.3989 -0.1794 3.2972 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 0.7093 1.1619 -3.4844 30 1 -0.1473 0.6436 3.1076 31 1 1.0539 1.8073 2.3940 32 1 2.6522 1.4094 4.2100 33 1 1.1826 0.9009 5.1516 34 1 3.6218 -0.1178 5.9327 35 1 3.1623 -1.8347 6.0543 36 1 5.4257 -2.5136 5.3584 37 1 5.5301 -1.4334 6.7699 38 1 7.1850 -0.8217 5.0027 39 1 6.0091 0.4828 5.2933 40 1 4.1914 -0.2198 2.2278 41 1 4.2460 0.8372 3.6590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264003192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:04 Heat of formation + Delta-G solvation = -80.535147 kcal Electronic energy + Delta-G solvation = -21663.089618 eV Core-core repulsion = 18542.893672 eV Total energy + Delta-G solvation = -3120.195946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77357 -39.85745 -38.54440 -35.80207 -34.71313 -32.87808 -32.03725 -30.05880 -27.30388 -26.84621 -25.99568 -24.64343 -23.58605 -22.32748 -20.97519 -19.37127 -18.36047 -17.67898 -17.53643 -17.03357 -16.77250 -16.24229 -16.09605 -15.69330 -15.43315 -14.89761 -14.56500 -14.47110 -13.84046 -13.83256 -13.54238 -13.27760 -13.01008 -12.97921 -12.75755 -12.65157 -12.52063 -12.37918 -12.19945 -12.03962 -11.97014 -11.72442 -11.35653 -11.17402 -11.05884 -10.59296 -10.42309 -10.14778 -9.49256 -8.18042 -6.28479 1.36926 1.37076 1.49744 1.92997 2.09092 2.42606 2.94602 3.10837 3.45913 3.80745 3.83584 3.87020 3.99293 4.03093 4.16124 4.23124 4.30872 4.50641 4.56413 4.62876 4.68520 4.74009 4.75778 4.80807 4.89962 4.92704 4.96414 4.99429 5.08722 5.10497 5.19360 5.29330 5.37349 5.42487 5.51418 5.70184 5.94750 6.21850 6.29248 6.75516 6.92880 7.38695 7.55417 8.87774 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.005546 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.177743 B = 5047.493669 C = 5768.477660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.032 3.968 3 H 0.032 0.968 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.271 1.271 11 H -0.282 1.282 12 C 0.538 3.462 13 O -0.588 6.588 14 N -0.656 5.656 15 C 0.096 3.904 16 C -0.125 4.125 17 C 0.128 3.872 18 H 0.103 0.897 19 C -0.116 4.116 20 H 0.043 0.957 21 C -0.104 4.104 22 C -0.152 4.152 23 C 0.047 3.953 24 O -0.417 6.417 25 C 0.076 3.924 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.265 0.735 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 3.039 21.140 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.011 3.989 3 H 0.049 0.951 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.196 1.196 11 H -0.207 1.207 12 C 0.330 3.670 13 O -0.468 6.468 14 N -0.393 5.393 15 C -0.026 4.026 16 C -0.163 4.163 17 C 0.025 3.975 18 H 0.121 0.879 19 C -0.135 4.135 20 H 0.061 0.939 21 C -0.141 4.141 22 C -0.190 4.190 23 C -0.029 4.029 24 O -0.337 6.337 25 C 0.000 4.000 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.723 2.517 20.585 20.810 hybrid contribution 0.181 -0.729 -1.467 1.648 sum 1.904 1.787 19.118 19.296 Atomic orbital electron populations 1.21533 0.95071 0.98984 1.01724 1.18698 0.95295 0.95406 0.89529 0.95058 1.21286 1.31595 1.12660 0.91356 0.93861 1.25585 0.95174 0.95754 1.01334 1.69947 1.37199 1.23438 1.24315 0.85613 0.78544 0.78657 0.79172 1.19771 1.19568 1.20748 1.21239 0.78270 0.83126 0.84353 1.90520 1.40566 1.28821 1.86869 1.50546 1.52516 1.32232 1.04003 1.23399 0.96891 0.89185 0.93111 1.23629 1.00835 0.93280 0.98506 1.23058 0.95485 0.98758 0.80179 0.87894 1.21716 0.94536 0.99042 0.98239 0.93870 1.21563 0.96416 1.03982 0.92176 1.22183 0.95482 0.99378 1.01953 1.22880 0.99629 0.99670 0.80702 1.87948 1.28748 1.89236 1.27737 1.22511 0.81131 0.97115 0.99258 0.96459 0.92736 0.91182 0.92533 0.87942 0.90228 0.88725 0.85523 0.88934 0.89691 0.92952 0.87602 0.88164 0.91463 0.93309 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.85 71.98 0.64 -4.85 16 2 C 0.03 1.69 2.47 -12.28 -0.03 1.66 16 3 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.53 -32.41 8.37 25.60 0.21 -32.20 16 5 H 0.04 2.85 6.75 -2.91 -0.02 2.83 16 6 C 0.02 1.20 5.30 84.66 0.45 1.65 16 7 N -0.91 -52.55 11.32 21.45 0.24 -52.31 16 8 Si 0.95 46.76 29.54 68.60 2.03 48.78 16 9 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 12 C 0.54 26.34 5.99 87.66 0.52 26.86 16 13 O -0.59 -33.62 14.71 -3.03 -0.04 -33.67 16 14 N -0.66 -23.20 2.89 -813.89 -2.35 -25.54 16 15 C 0.10 2.30 6.88 86.48 0.59 2.89 16 16 C -0.13 -2.14 6.88 31.27 0.22 -1.93 16 17 C 0.13 3.30 4.18 45.10 0.19 3.49 16 18 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 19 C -0.12 -3.30 2.04 -10.70 -0.02 -3.32 16 20 H 0.04 1.60 8.09 -2.39 -0.02 1.58 16 21 C -0.10 -1.85 5.21 30.72 0.16 -1.69 16 22 C -0.15 -2.75 6.13 30.69 0.19 -2.57 16 23 C 0.05 1.03 6.84 72.02 0.49 1.52 16 24 O -0.42 -14.23 10.77 -148.98 -1.60 -15.84 16 25 C 0.08 2.56 5.47 72.01 0.39 2.95 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 2.09 6.13 -2.39 -0.01 2.07 16 28 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 29 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 30 H 0.10 2.03 7.97 -2.39 -0.02 2.01 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.09 1.61 6.09 -2.39 -0.01 1.60 16 33 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.20 7.55 -2.39 -0.02 1.18 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 2.18 5.58 -2.39 -0.01 2.16 16 41 H 0.07 1.91 6.15 -2.39 -0.01 1.89 16 Total: -1.00 -77.67 315.27 3.29 -74.38 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.01 Total: 9.72 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 4.01 Total: -5.53 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.11 Total: -77.85 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -1.65 Total: -49.50 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -77.67 3.29 -74.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264003192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.153 kcal (2) G-P(sol) polarization free energy of solvation -77.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds