Wall clock time and date at job start Mon Mar 30 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47418 * 2 1 4 4 C 1.50700 * 109.47390 * 239.99852 * 2 1 3 5 5 H 1.07993 * 120.00103 * 240.00161 * 4 2 1 6 6 C 1.37876 * 119.99882 * 60.00030 * 4 2 1 7 7 N 1.31516 * 119.99688 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00001 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47080 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47293 * 119.99963 * 8 6 4 11 11 H 1.48503 * 109.46979 * 240.00068 * 8 6 4 12 12 C 1.50705 * 109.47166 * 119.99806 * 2 1 3 13 13 O 1.20826 * 119.99822 * 119.99751 * 12 2 1 14 14 O 1.34228 * 120.00139 * 300.00377 * 12 2 1 15 15 C 1.45195 * 117.00338 * 179.97438 * 14 12 2 16 16 H 1.09006 * 109.21199 * 29.43563 * 15 14 12 17 17 C 1.52820 * 109.25218 * 270.00213 * 15 14 12 18 18 C 1.53638 * 110.64769 * 185.84348 * 17 15 14 19 19 N 1.45527 * 107.85864 * 57.12798 * 18 17 15 20 20 C 1.46334 * 117.21614 * 174.44955 * 19 18 17 21 21 C 1.54803 * 105.96300 * 151.93234 * 20 19 18 22 22 C 1.55329 * 104.99156 * 356.35508 * 21 20 19 23 23 C 1.48662 * 109.71389 * 294.67480 * 19 18 17 24 24 H 1.09002 * 111.11427 * 307.46381 * 23 19 18 25 25 C 1.52368 * 107.92947 * 69.29917 * 23 19 18 26 26 H 1.08996 * 109.47057 * 299.99737 * 1 2 3 27 27 H 1.08994 * 109.46823 * 60.00271 * 1 2 3 28 28 H 1.09003 * 109.46916 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99656 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.24054 * 65.53844 * 17 15 14 31 31 H 1.09004 * 109.23666 * 306.14085 * 17 15 14 32 32 H 1.09007 * 109.77751 * 297.53662 * 18 17 15 33 33 H 1.09002 * 109.82904 * 176.74912 * 18 17 15 34 34 H 1.08993 * 110.16029 * 32.80440 * 20 19 18 35 35 H 1.09002 * 110.15283 * 271.04944 * 20 19 18 36 36 H 1.09000 * 110.33901 * 237.47102 * 21 20 19 37 37 H 1.09008 * 110.42554 * 115.27696 * 21 20 19 38 38 H 1.08996 * 110.90657 * 219.60889 * 22 21 20 39 39 H 1.09003 * 110.90893 * 96.00130 * 22 21 20 40 40 H 1.09002 * 109.83239 * 56.31309 * 25 23 19 41 41 H 1.08993 * 109.83568 * 177.26702 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6033 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0324 -0.7104 1.2305 13 8 2.7270 -1.6928 1.1197 14 8 1.7081 -0.2518 2.4496 15 6 2.2267 -0.9863 3.5897 16 1 3.1743 -1.4506 3.3163 17 6 1.2285 -2.0737 3.9850 18 6 1.6757 -2.7762 5.2761 19 7 1.8165 -1.7621 6.3103 20 6 2.1166 -2.2253 7.6655 21 6 2.8937 -1.0729 8.3471 22 6 3.0732 0.0009 7.2392 23 6 2.9211 -0.8330 5.9544 24 1 3.8378 -1.3795 5.7326 25 6 2.4734 -0.0105 4.7525 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7096 1.1618 -3.4844 30 1 1.1599 -2.8075 3.1820 31 1 0.2490 -1.6220 4.1426 32 1 2.6324 -3.2727 5.1135 33 1 0.9266 -3.5086 5.5771 34 1 2.7333 -3.1232 7.6277 35 1 1.1922 -2.4265 8.2069 36 1 3.8650 -1.4246 8.6948 37 1 2.3187 -0.6663 9.1791 38 1 4.0629 0.4543 7.2938 39 1 2.2945 0.7609 7.3042 40 1 1.5403 0.5036 4.9831 41 1 3.2432 0.7167 4.4945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344515562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:58 Heat of formation + Delta-G solvation = -113.013562 kcal Electronic energy + Delta-G solvation = -20988.470101 eV Core-core repulsion = 17866.865785 eV Total energy + Delta-G solvation = -3121.604315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.68786 -40.55505 -37.67486 -35.93418 -35.13217 -33.21512 -32.54723 -30.09077 -28.16627 -27.29210 -25.27651 -24.06913 -22.78793 -21.84864 -21.27556 -20.92818 -18.65100 -18.07386 -17.53214 -17.00676 -16.70697 -16.55794 -16.19867 -15.83655 -15.00271 -14.84911 -14.71107 -14.26636 -14.05970 -13.65765 -13.60513 -13.32810 -13.01457 -12.79334 -12.62956 -12.56105 -12.41546 -12.32030 -12.23529 -12.15274 -12.06822 -12.02770 -11.64104 -11.44783 -11.14512 -11.10878 -10.96801 -10.54127 -9.35335 -8.21225 -6.34597 1.39709 1.41478 1.44457 1.54506 1.88619 2.43033 2.90327 3.08628 3.48912 3.56770 3.78028 3.90863 3.97386 4.08004 4.12544 4.24922 4.27188 4.36716 4.53190 4.62546 4.67436 4.71455 4.75293 4.82645 4.85915 4.89544 4.97491 4.99942 5.04043 5.07577 5.12278 5.27016 5.34057 5.39436 5.54699 5.69456 5.87605 5.94140 6.09339 6.23276 6.72084 7.05736 7.34351 8.85584 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.046331 B = 0.003844 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.203746 B = 7281.865181 C = 7398.891059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.049 3.951 3 H 0.050 0.950 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.272 1.272 12 C 0.472 3.528 13 O -0.544 6.544 14 O -0.357 6.357 15 C 0.078 3.922 16 H 0.055 0.945 17 C -0.124 4.124 18 C 0.075 3.925 19 N -0.547 5.547 20 C 0.046 3.954 21 C -0.122 4.122 22 C -0.110 4.110 23 C 0.067 3.933 24 H 0.051 0.949 25 C -0.092 4.092 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.268 0.732 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -2.401 21.066 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.030 3.970 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.198 1.198 12 C 0.318 3.682 13 O -0.434 6.434 14 O -0.274 6.274 15 C 0.023 3.977 16 H 0.073 0.927 17 C -0.163 4.163 18 C -0.053 4.053 19 N -0.273 5.273 20 C -0.081 4.081 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.041 4.041 24 H 0.069 0.931 25 C -0.130 4.130 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.395 -2.387 20.958 21.140 hybrid contribution 1.063 -1.080 -1.268 1.976 sum 2.458 -3.466 19.691 20.144 Atomic orbital electron populations 1.21544 0.94342 0.99820 1.01974 1.18689 0.95937 0.96118 0.86273 0.93208 1.21276 1.32593 1.13234 0.90546 0.92701 1.25648 0.94873 0.95661 1.01574 1.69970 1.36673 1.23377 1.24717 0.85411 0.78397 0.78506 0.78786 1.20199 1.19692 1.19756 1.24855 0.75777 0.82518 0.85091 1.90455 1.37698 1.27930 1.87304 1.86636 1.69964 1.55762 1.15081 1.22992 0.96977 0.93615 0.84131 0.92694 1.21896 0.99903 0.96999 0.97452 1.21751 1.00410 0.93344 0.89823 1.62748 1.43486 1.18855 1.02209 1.22599 1.00186 0.97173 0.88113 1.22635 1.00665 0.94627 0.98077 1.22363 1.03013 0.97478 0.91922 1.22537 0.92230 0.94245 0.95096 0.93093 1.21584 1.03174 0.96895 0.91328 0.93339 0.90327 0.95338 0.92217 0.92864 0.90208 0.94968 0.88709 0.94092 0.89611 0.90375 0.89546 0.89561 0.90238 0.89745 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.90 71.98 0.64 -5.14 16 2 C 0.05 2.58 2.74 -12.28 -0.03 2.55 16 3 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 4 C -0.54 -31.30 8.37 25.60 0.21 -31.09 16 5 H 0.05 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -51.07 11.32 21.45 0.24 -50.83 16 8 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.47 23.17 7.22 71.24 0.51 23.68 16 13 O -0.54 -29.02 14.66 21.96 0.32 -28.69 16 14 O -0.36 -14.79 9.77 -51.39 -0.50 -15.29 16 15 C 0.08 2.62 2.49 30.80 0.08 2.70 16 16 H 0.05 2.05 7.12 -2.38 -0.02 2.03 16 17 C -0.12 -3.76 5.70 30.75 0.18 -3.58 16 18 C 0.08 1.77 5.85 86.78 0.51 2.28 16 19 N -0.55 -11.67 4.66 -865.95 -4.04 -15.71 16 20 C 0.05 0.74 6.86 87.03 0.60 1.33 16 21 C -0.12 -1.53 6.98 32.01 0.22 -1.31 16 22 C -0.11 -1.67 6.61 31.71 0.21 -1.46 16 23 C 0.07 1.41 2.60 44.68 0.12 1.53 16 24 H 0.05 1.13 8.06 -2.39 -0.02 1.11 16 25 C -0.09 -2.38 5.39 30.65 0.17 -2.22 16 26 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 27 H 0.08 4.09 6.07 -2.39 -0.01 4.08 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.03 0.78 8.05 -2.38 -0.02 0.76 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 0.63 8.04 -2.39 -0.02 0.61 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.23 8.11 -2.39 -0.02 1.21 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.11 324.48 2.89 -61.21 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.99 Total: 11.93 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.86 Total: -9.04 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -3.80 Total: -66.54 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.18 Total: -43.99 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.11 2.89 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344515562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.802 kcal (2) G-P(sol) polarization free energy of solvation -64.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds