Wall clock time and date at job start Mon Mar 30 2020 00:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46566 * 2 1 4 4 C 1.50698 * 109.46759 * 240.00156 * 2 1 3 5 5 H 1.08000 * 119.99642 * 239.99474 * 4 2 1 6 6 C 1.37877 * 120.00042 * 60.00106 * 4 2 1 7 7 N 1.31509 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99758 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47225 * 89.99973 * 8 6 4 10 10 H 1.48505 * 109.47144 * 209.99804 * 8 6 4 11 11 H 1.48503 * 109.47382 * 329.99884 * 8 6 4 12 12 C 1.50694 * 109.47211 * 120.00086 * 2 1 3 13 13 O 1.21288 * 120.00155 * 95.25188 * 12 2 1 14 14 N 1.34780 * 120.00078 * 275.25444 * 12 2 1 15 15 C 1.46896 * 120.57806 * 355.28272 * 14 12 2 16 16 C 1.53228 * 108.90564 * 126.73674 * 15 14 12 17 17 C 1.53022 * 109.18396 * 54.44632 * 16 15 14 18 18 H 1.09004 * 109.45244 * 58.21191 * 17 16 15 19 19 O 1.42851 * 110.11200 * 178.13481 * 17 16 15 20 20 C 1.42945 * 114.33303 * 180.87918 * 19 17 16 21 21 C 1.53080 * 109.50409 * 299.14440 * 20 19 17 22 22 C 1.53211 * 109.23202 * 57.43801 * 21 20 19 23 23 C 1.53104 * 108.95153 * 303.10197 * 22 21 20 24 24 H 1.08996 * 109.57195 * 296.79204 * 23 22 21 25 25 C 1.46970 * 120.57719 * 175.26204 * 14 12 2 26 26 H 1.09003 * 109.47442 * 304.88674 * 1 2 3 27 27 H 1.08999 * 109.47270 * 64.89036 * 1 2 3 28 28 H 1.09002 * 109.47207 * 184.88805 * 1 2 3 29 29 H 0.96998 * 120.00290 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.56479 * 6.91168 * 15 14 12 31 31 H 1.09005 * 109.56588 * 246.56280 * 15 14 12 32 32 H 1.08992 * 109.51928 * 174.35878 * 16 15 14 33 33 H 1.09001 * 109.51669 * 294.53936 * 16 15 14 34 34 H 1.09005 * 109.46235 * 179.13658 * 20 19 17 35 35 H 1.08996 * 109.46550 * 59.15414 * 20 19 17 36 36 H 1.08992 * 109.51300 * 297.50538 * 21 20 19 37 37 H 1.09000 * 109.50703 * 177.36318 * 21 20 19 38 38 H 1.08990 * 109.55760 * 183.26282 * 22 21 20 39 39 H 1.08997 * 109.56002 * 62.94070 * 22 21 20 40 40 H 1.09005 * 109.61627 * 353.28844 * 25 14 12 41 41 H 1.09003 * 109.61778 * 113.63930 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1195 -4.0079 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1401 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 6 2.0324 -0.7104 1.2304 13 8 2.3252 -1.8861 1.1748 14 7 2.1562 -0.0393 2.3927 15 6 1.9043 1.4067 2.4512 16 6 0.8809 1.6880 3.5564 17 6 1.3785 1.0795 4.8692 18 1 2.3517 1.5019 5.1193 19 8 0.4590 1.3676 5.9238 20 6 0.8478 0.8555 7.2005 21 6 0.9547 -0.6699 7.1284 22 6 1.9575 -1.0544 6.0357 23 6 1.5073 -0.4382 4.7084 24 1 0.5437 -0.8577 4.4194 25 6 2.5453 -0.7416 3.6237 26 1 -0.3634 0.5878 0.8430 27 1 -0.3634 0.4361 -0.9305 28 1 -0.3634 -1.0239 0.0876 29 1 0.7087 1.1613 -3.4844 30 1 1.5105 1.7476 1.4937 31 1 2.8341 1.9306 2.6728 32 1 0.7612 2.7647 3.6763 33 1 -0.0767 1.2418 3.2881 34 1 0.1018 1.1325 7.9454 35 1 1.8141 1.2745 7.4810 36 1 -0.0216 -1.0925 6.8915 37 1 1.2963 -1.0566 8.0885 38 1 1.9948 -2.1394 5.9402 39 1 2.9454 -0.6754 6.2973 40 1 2.5772 -1.8153 3.4380 41 1 3.5276 -0.3969 3.9469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350934579.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:16 Heat of formation + Delta-G solvation = -115.419684 kcal Electronic energy + Delta-G solvation = -21560.298300 eV Core-core repulsion = 18438.589647 eV Total energy + Delta-G solvation = -3121.708653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53024 -40.08715 -37.33526 -35.89805 -34.91258 -33.17456 -32.32471 -31.27051 -27.28130 -27.09344 -25.74864 -24.44771 -23.50062 -22.30893 -21.20574 -19.82407 -18.48220 -17.89362 -17.32187 -16.80969 -16.70175 -16.29604 -16.17458 -15.66394 -15.20292 -14.86406 -14.74691 -14.50877 -14.01040 -13.92044 -13.45855 -13.43251 -13.03332 -12.99521 -12.66550 -12.63043 -12.56288 -12.40619 -12.23728 -12.04407 -11.98338 -11.90638 -11.58774 -11.20115 -11.02669 -10.60746 -10.34981 -10.21623 -9.58603 -8.15757 -6.26726 1.40384 1.41653 1.52624 1.86056 2.13870 2.45567 2.77557 3.13283 3.57347 3.71012 3.73390 4.01710 4.06321 4.11474 4.16097 4.27447 4.34151 4.44157 4.57338 4.61722 4.67260 4.70452 4.73041 4.80629 4.86536 4.92500 4.99648 5.01973 5.03398 5.09274 5.17886 5.22416 5.39226 5.42135 5.64871 5.71357 5.93069 6.18081 6.32154 6.55140 6.79089 7.36866 7.46889 8.89754 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041266 B = 0.004654 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.366170 B = 6014.829546 C = 6405.087406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.028 3.972 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.591 6.591 14 N -0.621 5.621 15 C 0.107 3.893 16 C -0.120 4.120 17 C 0.103 3.897 18 H 0.075 0.925 19 O -0.399 6.399 20 C 0.056 3.944 21 C -0.151 4.151 22 C -0.113 4.113 23 C -0.124 4.124 24 H 0.056 0.944 25 C 0.117 3.883 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.014 0.986 29 H 0.266 0.734 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 4.205 19.740 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.007 3.993 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.203 1.203 12 C 0.313 3.687 13 O -0.471 6.471 14 N -0.354 5.354 15 C -0.015 4.015 16 C -0.158 4.158 17 C 0.046 3.954 18 H 0.093 0.907 19 O -0.318 6.318 20 C -0.020 4.020 21 C -0.189 4.189 22 C -0.151 4.151 23 C -0.143 4.143 24 H 0.074 0.926 25 C -0.005 4.005 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.791 3.818 19.542 19.927 hybrid contribution 0.321 -0.889 -1.069 1.427 sum 1.112 2.929 18.473 18.737 Atomic orbital electron populations 1.21517 0.95504 0.98495 1.01973 1.18818 0.94798 0.96322 0.89326 0.93359 1.21221 1.31887 1.12438 0.91249 0.93957 1.25559 0.95124 0.95695 1.01283 1.69921 1.36932 1.23413 1.24426 0.85606 0.78609 0.78550 0.79176 1.20292 1.19648 1.20260 1.21696 0.74964 0.86745 0.85318 1.90488 1.52000 1.18961 1.85672 1.48338 1.69163 1.09820 1.08074 1.21917 0.99802 0.79354 1.00456 1.21854 0.98730 1.02873 0.92386 1.21998 0.93102 0.92802 0.87536 0.90736 1.87864 1.48803 1.77343 1.17829 1.22786 1.01723 0.92982 0.84556 1.22168 0.99648 0.97102 0.99942 1.21590 0.99894 1.01037 0.92617 1.22078 0.98817 0.97572 0.95874 0.92585 1.21606 0.97828 0.97876 0.83233 0.93793 0.90493 0.96649 0.92445 0.89132 0.89204 0.87828 0.92362 0.87486 0.91782 0.92274 0.88448 0.91273 0.89950 0.91490 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.92 71.98 0.64 -5.03 16 2 C 0.03 1.46 1.80 -12.29 -0.02 1.43 16 3 H 0.05 2.46 6.28 -2.39 -0.02 2.44 16 4 C -0.53 -31.05 8.33 25.60 0.21 -30.84 16 5 H 0.04 2.65 7.02 -2.91 -0.02 2.63 16 6 C 0.02 1.28 5.29 84.66 0.45 1.73 16 7 N -0.91 -50.78 11.29 21.45 0.24 -50.54 16 8 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 C 0.52 25.02 6.80 87.65 0.60 25.61 16 13 O -0.59 -32.71 15.24 -3.06 -0.05 -32.76 16 14 N -0.62 -22.56 2.97 -818.81 -2.44 -24.99 16 15 C 0.11 3.10 6.25 86.38 0.54 3.64 16 16 C -0.12 -2.98 5.76 30.68 0.18 -2.80 16 17 C 0.10 2.34 2.48 30.65 0.08 2.41 16 18 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 19 O -0.40 -9.08 10.42 -148.98 -1.55 -10.64 16 20 C 0.06 0.87 6.85 72.01 0.49 1.36 16 21 C -0.15 -2.32 6.13 30.69 0.19 -2.13 16 22 C -0.11 -2.08 5.33 30.70 0.16 -1.92 16 23 C -0.12 -3.07 2.32 -10.65 -0.02 -3.10 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 C 0.12 3.52 5.71 86.35 0.49 4.02 16 26 H 0.04 1.81 7.84 -2.39 -0.02 1.79 16 27 H 0.08 4.04 5.95 -2.39 -0.01 4.03 16 28 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.09 2.96 5.13 -2.39 -0.01 2.94 16 31 H 0.09 2.14 8.14 -2.38 -0.02 2.13 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 2.36 7.03 -2.38 -0.02 2.34 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -68.83 316.19 3.22 -65.61 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.00 Total: 11.90 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 3.98 Total: -5.61 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.19 Total: -75.54 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.60 Total: -43.39 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.83 3.22 -65.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350934579.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.805 kcal (2) G-P(sol) polarization free energy of solvation -68.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds