Wall clock time and date at job start Mon Mar 30 2020 00:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47246 * 2 1 4 4 C 1.50700 * 109.46964 * 239.99994 * 2 1 3 5 5 H 1.08005 * 120.00243 * 239.99423 * 4 2 1 6 6 C 1.37878 * 119.99803 * 60.00139 * 4 2 1 7 7 N 1.31512 * 120.00345 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99902 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46889 * 59.99730 * 8 6 4 10 10 H 1.48497 * 109.47036 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47141 * 300.00157 * 8 6 4 12 12 C 1.50697 * 109.47389 * 119.99798 * 2 1 3 13 13 O 1.21288 * 119.99616 * 120.00113 * 12 2 1 14 14 N 1.34776 * 120.00410 * 299.99808 * 12 2 1 15 15 C 1.46820 * 125.29843 * 0.02640 * 14 12 2 16 16 C 1.54022 * 106.51992 * 198.72689 * 15 14 12 17 17 C 1.52999 * 110.55010 * 90.29698 * 16 15 14 18 18 C 1.52998 * 110.55147 * 212.97136 * 16 15 14 19 19 C 1.54484 * 103.84314 * 331.70783 * 16 15 14 20 20 H 1.08993 * 113.26321 * 151.16746 * 19 16 15 21 21 C 1.54238 * 108.05171 * 277.52364 * 19 16 15 22 22 O 1.42817 * 107.40263 * 134.09998 * 21 19 16 23 23 C 1.42814 * 110.69646 * 342.45015 * 22 21 19 24 24 C 1.46159 * 125.30373 * 179.71324 * 14 12 2 25 25 H 1.09004 * 110.79754 * 57.03911 * 24 14 12 26 26 H 1.08995 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46670 * 299.99718 * 1 2 3 28 28 H 1.08994 * 109.47322 * 59.99632 * 1 2 3 29 29 H 0.97004 * 120.00375 * 180.02562 * 7 6 4 30 30 H 1.08994 * 110.04834 * 317.99170 * 15 14 12 31 31 H 1.09001 * 110.04517 * 79.41266 * 15 14 12 32 32 H 1.08997 * 109.47380 * 61.45242 * 17 16 15 33 33 H 1.09000 * 109.47230 * 181.45660 * 17 16 15 34 34 H 1.09004 * 109.46955 * 301.45424 * 17 16 15 35 35 H 1.09000 * 109.46953 * 50.73677 * 18 16 15 36 36 H 1.09001 * 109.46766 * 170.73007 * 18 16 15 37 37 H 1.08995 * 109.46990 * 290.73257 * 18 16 15 38 38 H 1.09005 * 109.85811 * 253.56087 * 21 19 16 39 39 H 1.09003 * 109.85998 * 14.63723 * 21 19 16 40 40 H 1.09002 * 109.69268 * 122.75399 * 23 22 21 41 41 H 1.09001 * 109.69254 * 243.30389 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8267 -0.4198 -5.2204 11 1 3.8073 -1.1190 -4.0078 12 6 2.0324 -0.7103 1.2304 13 8 2.7297 -1.6964 1.1191 14 7 1.7069 -0.2499 2.4546 15 6 0.8732 0.9283 2.7238 16 6 1.1599 1.3445 4.1787 17 6 2.3137 2.3478 4.2329 18 6 -0.0945 1.9352 4.8255 19 6 1.5586 0.0216 4.8699 20 1 2.2445 0.1620 5.7052 21 6 0.2651 -0.7219 5.2612 22 8 0.4219 -2.0865 4.8702 23 6 1.4826 -2.2216 3.9234 24 6 2.1235 -0.8493 3.7208 25 1 3.2102 -0.9107 3.7809 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 0.7089 1.1615 -3.4844 30 1 1.1396 1.7377 2.0442 31 1 -0.1806 0.6747 2.6076 32 1 2.0410 3.2455 3.6781 33 1 2.5185 2.6103 5.2708 34 1 3.2037 1.9023 3.7884 35 1 -0.9345 1.2570 4.6754 36 1 0.0768 2.0705 5.8935 37 1 -0.3193 2.8989 4.3686 38 1 0.1143 -0.6604 6.3390 39 1 -0.5862 -0.2830 4.7408 40 1 2.2253 -2.9241 4.3016 41 1 1.0847 -2.5829 2.9751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557000316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:12 Heat of formation + Delta-G solvation = -79.550432 kcal Electronic energy + Delta-G solvation = -22095.245919 eV Core-core repulsion = 18975.092674 eV Total energy + Delta-G solvation = -3120.153245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12304 -38.17282 -36.75085 -33.80236 -33.59919 -31.07435 -29.69465 -28.77586 -27.34780 -26.08655 -25.13578 -23.00520 -22.68683 -20.99455 -19.13927 -18.67842 -16.81812 -16.16357 -15.91235 -15.49744 -15.21288 -14.78334 -14.53849 -14.29758 -13.86495 -13.72407 -13.18196 -12.87540 -12.58090 -12.52473 -12.08113 -12.02866 -11.82715 -11.69211 -11.50204 -11.31317 -10.97401 -10.79535 -10.73655 -10.70213 -10.51430 -10.36284 -10.26291 -9.96507 -9.32913 -8.97527 -8.63254 -8.33101 -8.11753 -6.03403 -4.06691 3.36301 3.38572 3.42797 3.55653 3.62609 3.95363 4.17128 4.39955 4.47264 4.69102 4.95896 5.00213 5.08886 5.19407 5.29916 5.33332 5.43273 5.52211 5.58533 5.65060 5.73758 5.75849 5.87665 5.94552 6.01445 6.04125 6.07718 6.11549 6.16508 6.29329 6.64503 6.80627 6.88499 6.99389 7.16748 7.47643 7.74956 7.98799 8.11876 8.37792 9.01270 9.16604 9.58662 11.04146 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.005854 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.485821 B = 4781.590984 C = 5227.792617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.037 3.963 3 H 0.051 0.949 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.536 3.464 13 O -0.541 6.541 14 N -0.619 5.619 15 C 0.114 3.886 16 C -0.072 4.072 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.120 4.120 20 H 0.107 0.893 21 C 0.053 3.947 22 O -0.384 6.384 23 C 0.049 3.951 24 C 0.112 3.888 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.020 0.980 28 H 0.093 0.907 29 H 0.261 0.739 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 4.270 16.259 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.069 0.931 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.328 3.672 13 O -0.416 6.416 14 N -0.356 5.356 15 C -0.009 4.009 16 C -0.073 4.073 17 C -0.194 4.194 18 C -0.201 4.201 19 C -0.139 4.139 20 H 0.125 0.875 21 C -0.023 4.023 22 O -0.303 6.303 23 C -0.028 4.028 24 C 0.007 3.993 25 H 0.105 0.895 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.738 3.642 16.000 16.501 hybrid contribution 0.463 -0.198 -0.897 1.029 sum -1.275 3.445 15.103 15.543 Atomic orbital electron populations 1.21884 0.96541 0.99937 1.01340 1.18816 0.94219 0.96614 0.88760 0.93114 1.21111 1.31096 1.12878 0.89003 0.90865 1.24935 0.95076 0.95053 0.99067 1.69860 1.37048 1.23041 1.23643 0.86506 0.79276 0.79750 0.81612 1.20180 1.21347 1.20193 1.21894 0.78161 0.84146 0.82960 1.90545 1.38135 1.26965 1.85930 1.48465 1.53116 1.29461 1.04576 1.22198 0.95343 0.88762 0.94613 1.21503 0.96639 0.94242 0.94886 1.21805 0.97555 0.98365 1.01633 1.21959 0.96337 1.01258 1.00518 1.23487 0.97627 0.95369 0.97434 0.87510 1.23433 0.97037 0.81952 0.99894 1.88116 1.54501 1.25903 1.61779 1.23172 0.89425 0.96952 0.93295 1.22085 0.99846 0.92401 0.84937 0.89548 0.95162 0.96113 0.88857 0.92901 0.90078 0.91340 0.91956 0.92513 0.92228 0.91527 0.92092 0.91811 0.90526 0.91098 0.90865 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.79 37.16 0.33 -2.91 16 2 C 0.04 0.92 2.02 -92.93 -0.19 0.74 16 3 H 0.05 1.32 7.87 -51.92 -0.41 0.91 16 4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.07 2.21 6.75 -52.48 -0.35 1.85 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.54 12.45 6.76 -10.99 -0.07 12.37 16 13 O -0.54 -14.20 15.34 5.55 0.09 -14.11 16 14 N -0.62 -11.23 3.00 -164.48 -0.49 -11.73 16 15 C 0.11 1.69 3.93 -3.33 -0.01 1.68 16 16 C -0.07 -0.79 0.76 -153.20 -0.12 -0.91 16 17 C -0.14 -1.39 8.51 37.16 0.32 -1.07 16 18 C -0.14 -1.24 7.75 37.16 0.29 -0.95 16 19 C -0.12 -1.38 3.55 -88.21 -0.31 -1.70 16 20 H 0.11 1.02 8.08 -51.93 -0.42 0.60 16 21 C 0.05 0.63 6.38 37.81 0.24 0.87 16 22 O -0.38 -5.94 11.27 -35.23 -0.40 -6.34 16 23 C 0.05 0.79 7.32 37.06 0.27 1.07 16 24 C 0.11 1.74 3.50 -67.23 -0.24 1.50 16 25 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.40 4.85 -51.93 -0.25 0.15 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 30 H 0.08 1.25 7.37 -51.93 -0.38 0.87 16 31 H 0.07 1.02 6.21 -51.93 -0.32 0.69 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.58 5.71 -51.93 -0.30 0.29 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.83 5.13 -51.93 -0.27 0.57 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -31.26 311.77 -6.72 -37.98 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.34 Total: -0.50 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 0.12 Total: -2.41 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.13 Total: -36.26 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.31 Total: -20.45 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.26 -6.72 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557000316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.567 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds