Wall clock time and date at job start Mon Mar 30 2020 00:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47326 * 2 1 4 4 C 1.53001 * 109.47067 * 239.99710 * 2 1 3 5 5 C 1.50700 * 109.46719 * 175.49471 * 4 2 1 6 6 H 1.07996 * 120.00543 * 356.08086 * 5 4 2 7 7 C 1.37883 * 119.99751 * 176.07788 * 5 4 2 8 8 N 1.31511 * 119.99853 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99862 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47487 * 89.99987 * 9 7 5 11 11 H 1.48499 * 109.47233 * 210.00067 * 9 7 5 12 12 H 1.48505 * 109.47274 * 329.99924 * 9 7 5 13 13 N 1.46902 * 109.46862 * 119.99802 * 2 1 3 14 14 C 1.47908 * 111.00053 * 63.74241 * 13 2 1 15 15 C 1.53990 * 107.05563 * 214.15461 * 14 13 2 16 16 H 1.08994 * 110.30940 * 120.13750 * 15 14 13 17 17 C 1.50704 * 110.30982 * 242.30462 * 15 14 13 18 18 O 1.20826 * 120.00157 * 118.54433 * 17 15 14 19 19 O 1.34223 * 119.99698 * 298.55093 * 17 15 14 20 20 C 1.54600 * 105.14355 * 1.22141 * 15 14 13 21 21 H 1.09001 * 110.72372 * 263.60421 * 20 15 14 22 22 C 1.52999 * 110.72671 * 140.49287 * 20 15 14 23 23 C 1.53003 * 117.49685 * 128.74925 * 22 20 15 24 24 C 1.53003 * 117.49524 * 60.08949 * 22 20 15 25 25 C 1.48534 * 111.00161 * 306.34240 * 13 2 1 26 26 H 1.09003 * 109.47032 * 186.91117 * 1 2 3 27 27 H 1.08997 * 109.46942 * 66.90636 * 1 2 3 28 28 H 1.08997 * 109.47000 * 306.90841 * 1 2 3 29 29 H 1.09003 * 109.47118 * 295.49332 * 4 2 1 30 30 H 1.08992 * 109.46833 * 55.49964 * 4 2 1 31 31 H 0.97004 * 119.99628 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.91146 * 333.50322 * 14 13 2 33 33 H 1.08997 * 109.91895 * 94.79859 * 14 13 2 34 34 H 0.96709 * 116.99858 * 179.97438 * 19 17 15 35 35 H 1.08996 * 115.54876 * 274.41925 * 22 20 15 36 36 H 1.08998 * 117.49685 * 359.97438 * 23 22 20 37 37 H 1.08998 * 117.49649 * 145.02428 * 23 22 20 38 38 H 1.09001 * 117.49581 * 214.97739 * 24 22 20 39 39 H 1.08997 * 117.50288 * 359.97438 * 24 22 20 40 40 H 1.09001 * 110.66352 * 278.15255 * 25 13 2 41 41 H 1.08991 * 110.66796 * 41.28465 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5429 -0.6253 -1.3062 6 1 4.0758 -0.0491 -0.5644 7 6 4.2376 -1.2734 -2.3055 8 7 5.5492 -1.1901 -2.3549 9 14 3.3159 -2.2697 -3.5889 10 1 2.9688 -1.3960 -4.7384 11 1 4.1739 -3.3873 -4.0580 12 1 2.0722 -2.8179 -2.9906 13 7 2.0197 -0.6925 1.1995 14 6 1.6204 -2.1166 1.1895 15 6 1.3607 -2.5232 2.6519 16 1 0.3314 -2.8602 2.7738 17 6 2.3203 -3.6067 3.0718 18 8 3.0944 -3.4101 3.9785 19 8 2.3150 -4.7901 2.4385 20 6 1.6063 -1.2394 3.4777 21 1 2.6185 -1.2286 3.8819 22 6 0.5754 -1.1127 4.6010 23 6 1.1001 -0.8659 6.0169 24 6 0.5231 -2.2332 5.6415 25 6 1.4223 -0.1130 2.4298 26 1 -0.3633 -1.0202 0.1237 27 1 -0.3633 0.4031 -0.9453 28 1 -0.3633 0.6171 0.8217 29 1 1.7441 -1.7697 -1.2097 30 1 1.6124 -0.2562 -2.1373 31 1 6.0379 -1.6457 -3.0582 32 1 0.7111 -2.2431 0.6019 33 1 2.4230 -2.7244 0.7720 34 1 2.9490 -5.4539 2.7430 35 1 -0.3663 -0.6391 4.3236 36 1 2.1798 -0.7943 6.1481 37 1 0.5034 -0.2304 6.6711 38 1 -0.4530 -2.4965 6.0490 39 1 1.2228 -3.0609 5.5255 40 1 1.9604 0.7854 2.7323 41 1 0.3647 0.1031 2.2790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592471823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:27 Heat of formation + Delta-G solvation = -61.055109 kcal Electronic energy + Delta-G solvation = -21555.795187 eV Core-core repulsion = 18436.443959 eV Total energy + Delta-G solvation = -3119.351228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66836 -38.87204 -37.12990 -35.90754 -33.89944 -32.16133 -29.70684 -28.59111 -27.77758 -23.93097 -23.39531 -22.45269 -21.63710 -21.15021 -19.69161 -18.53996 -17.77533 -16.82575 -16.60824 -16.40658 -15.39700 -15.03058 -14.38388 -14.25782 -14.05448 -13.42775 -13.28557 -12.93635 -12.40248 -12.19042 -12.15236 -11.92364 -11.62342 -11.56761 -11.43069 -11.36769 -11.14118 -11.13473 -10.76117 -10.55420 -10.44646 -10.23759 -10.04606 -9.93169 -9.64253 -9.50271 -9.07494 -8.44212 -7.66734 -5.92040 -3.87021 2.36583 3.15102 3.34108 3.42270 3.43582 3.70909 4.34736 4.52590 4.59709 4.72932 4.82855 4.96108 5.11284 5.20739 5.41851 5.43692 5.46515 5.55299 5.59848 5.64284 5.70190 5.73602 5.82175 5.87453 5.89825 6.09082 6.12175 6.22245 6.29002 6.42694 6.47646 6.51565 6.64223 6.72550 7.05189 7.30902 7.52261 7.72998 7.91435 8.03970 8.69649 9.20636 9.70277 11.21859 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.006054 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.244901 B = 4623.591110 C = 5217.379411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.086 3.914 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.494 4.494 6 H 0.079 0.921 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.484 5.484 14 C 0.051 3.949 15 C -0.088 4.088 16 H 0.108 0.892 17 C 0.493 3.507 18 O -0.514 6.514 19 O -0.514 6.514 20 C -0.049 4.049 21 H 0.102 0.898 22 C -0.144 4.144 23 C -0.172 4.172 24 C -0.184 4.184 25 C 0.033 3.967 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.407 0.593 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 -2.823 12.837 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.023 4.023 3 H 0.099 0.901 4 C -0.049 4.049 5 C -0.532 4.532 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.207 5.207 14 C -0.077 4.077 15 C -0.108 4.108 16 H 0.126 0.874 17 C 0.336 3.664 18 O -0.402 6.402 19 O -0.326 6.326 20 C -0.068 4.068 21 H 0.121 0.879 22 C -0.163 4.163 23 C -0.209 4.209 24 C -0.221 4.221 25 C -0.095 4.095 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.266 0.734 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.214 -2.472 12.818 17.877 hybrid contribution -0.850 -1.188 -0.638 1.594 sum -13.064 -3.661 12.180 18.233 Atomic orbital electron populations 1.22599 0.99606 1.01208 1.01537 1.21834 0.89994 0.99132 0.91304 0.90124 1.19749 0.98126 0.95394 0.91602 1.21054 0.89226 1.30876 1.12094 0.90276 1.25013 0.94656 0.96458 0.97567 1.69917 1.06211 1.44536 1.33919 0.86924 0.80213 0.80444 0.82500 1.20544 1.21582 1.19230 1.65029 1.53829 1.00626 1.01243 1.22790 1.01347 0.92197 0.91407 1.22005 0.98079 0.92126 0.98596 0.87358 1.23249 0.82565 0.81968 0.78638 1.90674 1.39223 1.80584 1.29700 1.84553 1.61000 1.25215 1.61807 1.21719 0.99980 0.91896 0.93233 0.87946 1.22282 1.00215 1.03653 0.90136 1.22977 1.01422 0.99060 0.97431 1.22985 1.02397 0.92955 1.03731 1.23398 0.98384 0.97427 0.90274 0.92865 0.92232 0.93134 0.96325 0.96729 0.93037 0.92330 0.89041 0.73431 0.87734 0.88503 0.89055 0.89169 0.88629 0.89880 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 8.35 37.16 0.31 -2.56 16 2 C 0.09 1.63 2.48 -67.71 -0.17 1.46 16 3 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 4 C -0.01 -0.26 3.33 -27.88 -0.09 -0.35 16 5 C -0.49 -13.91 9.38 -34.44 -0.32 -14.23 16 6 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 9 Si 0.87 21.71 27.55 -169.99 -4.68 17.03 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.35 6.43 56.52 0.36 -5.99 16 13 N -0.48 -8.92 5.06 -222.50 -1.12 -10.04 16 14 C 0.05 0.87 4.68 -2.75 -0.01 0.85 16 15 C -0.09 -1.25 2.79 -90.41 -0.25 -1.50 16 16 H 0.11 1.29 7.85 -51.93 -0.41 0.88 16 17 C 0.49 7.41 6.98 36.01 0.25 7.66 16 18 O -0.51 -8.79 15.23 -18.75 -0.29 -9.08 16 19 O -0.51 -6.63 13.34 -39.24 -0.52 -7.16 16 20 C -0.05 -0.68 2.56 -88.75 -0.23 -0.91 16 21 H 0.10 1.65 6.73 -51.93 -0.35 1.30 16 22 C -0.14 -1.60 5.13 -90.62 -0.46 -2.07 16 23 C -0.17 -1.81 10.20 -26.69 -0.27 -2.08 16 24 C -0.18 -1.96 9.95 -26.69 -0.27 -2.23 16 25 C 0.03 0.48 5.79 -1.90 -0.01 0.47 16 26 H 0.05 0.77 6.00 -51.93 -0.31 0.46 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 29 H 0.02 0.43 5.45 -51.93 -0.28 0.15 16 30 H 0.01 0.33 7.77 -51.93 -0.40 -0.07 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.06 0.95 5.30 -51.93 -0.28 0.67 16 33 H 0.09 1.84 7.61 -51.93 -0.40 1.44 16 34 H 0.41 3.49 9.10 45.56 0.41 3.90 16 35 H 0.10 1.04 7.95 -51.93 -0.41 0.62 16 36 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.18 6.65 -51.93 -0.35 0.83 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.65 5.35 -51.93 -0.28 0.37 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -32.69 320.04 -8.15 -40.84 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.50 Total: 4.82 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.62 Total: -13.73 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.35 Total: -37.55 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.81 Total: -16.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.68 Total: 17.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.69 -8.15 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592471823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.219 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds