Wall clock time and date at job start Mon Mar 30 2020 00:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46903 * 2 1 4 4 N 1.46902 * 109.47082 * 240.00035 * 2 1 3 5 5 C 1.46905 * 110.99757 * 85.00016 * 4 2 1 6 6 H 1.08993 * 110.05528 * 326.41438 * 5 4 2 7 7 C 1.53879 * 110.03072 * 87.83572 * 5 4 2 8 8 C 1.54267 * 106.59915 * 119.28315 * 7 5 4 9 9 C 1.54895 * 104.19490 * 23.60719 * 8 7 5 10 10 H 1.08997 * 110.91032 * 80.44805 * 9 8 7 11 11 C 1.50702 * 110.75141 * 203.74485 * 9 8 7 12 12 H 1.08000 * 119.99869 * 113.32895 * 11 9 8 13 13 C 1.37876 * 119.99748 * 293.32446 * 11 9 8 14 14 N 1.31520 * 120.00363 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99876 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47130 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47131 * 300.00251 * 15 13 11 18 18 H 1.48498 * 109.46712 * 60.00223 * 15 13 11 19 19 C 1.54272 * 110.02998 * 204.99564 * 5 4 2 20 20 C 1.53000 * 109.47359 * 119.99820 * 2 1 3 21 21 H 1.09001 * 115.54896 * 81.14897 * 20 2 1 22 22 C 1.52998 * 117.50255 * 226.85929 * 20 2 1 23 23 C 1.52995 * 117.49805 * 295.48204 * 20 2 1 24 24 H 1.09004 * 117.49818 * 144.99628 * 23 20 2 25 25 C 1.50694 * 117.50113 * 359.97438 * 23 20 2 26 26 O 1.20831 * 119.99827 * 329.56344 * 25 23 20 27 27 O 1.34227 * 120.00338 * 149.56386 * 25 23 20 28 28 H 1.09001 * 109.47518 * 305.55501 * 1 2 3 29 29 H 1.09004 * 109.47472 * 65.55897 * 1 2 3 30 30 H 1.08998 * 109.47473 * 185.55499 * 1 2 3 31 31 H 1.00902 * 110.99913 * 208.95192 * 4 2 1 32 32 H 1.09008 * 110.02444 * 238.56601 * 7 5 4 33 33 H 1.08992 * 110.03239 * 359.97438 * 7 5 4 34 34 H 1.08991 * 110.48226 * 264.92636 * 8 7 5 35 35 H 1.09002 * 110.48283 * 142.28360 * 8 7 5 36 36 H 0.97002 * 119.99549 * 359.97438 * 14 13 11 37 37 H 1.09004 * 110.48001 * 98.42626 * 19 5 4 38 38 H 1.09004 * 110.59626 * 335.84428 * 19 5 4 39 39 H 1.08996 * 117.49640 * 214.98312 * 22 20 2 40 40 H 1.09000 * 117.49653 * 359.97438 * 22 20 2 41 41 H 0.96698 * 117.00667 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2759 0.9533 -2.2868 7 6 3.4432 0.9405 -2.3747 8 6 4.1173 0.5557 -3.7078 9 6 2.9370 0.1633 -4.6310 10 1 2.4591 1.0492 -5.0492 11 6 3.4013 -0.7591 -5.7285 12 1 3.0570 -1.7824 -5.7556 13 6 4.2656 -0.2966 -6.6981 14 7 4.6852 0.9494 -6.6649 15 14 4.8406 -1.4398 -8.0591 16 1 5.7580 -0.7060 -8.9674 17 1 5.5552 -2.5975 -7.4641 18 1 3.6659 -1.9248 -8.8273 19 6 1.9772 -0.5735 -3.6641 20 6 2.0400 -0.7212 1.2492 21 1 2.0541 -1.8096 1.1909 22 6 3.1504 -0.0420 2.0533 23 6 1.7250 -0.0905 2.6071 24 1 1.5319 -0.7640 3.4422 25 6 0.9367 1.1938 2.6118 26 8 1.0356 1.9667 1.6883 27 8 0.1246 1.4791 3.6417 28 1 -0.3634 0.5976 0.8360 29 1 -0.3634 0.4252 -0.9356 30 1 -0.3634 -1.0228 0.0995 31 1 2.9173 -1.1205 -1.0287 32 1 3.2969 2.0197 -2.3281 33 1 4.0567 0.6102 -1.5366 34 1 4.7882 -0.2914 -3.5654 35 1 4.6584 1.4068 -4.1213 36 1 4.3863 1.5431 -5.9585 37 1 0.9565 -0.5464 -4.0456 38 1 2.3011 -1.6037 -3.5164 39 1 3.8954 -0.6835 2.5239 40 1 3.5179 0.9185 1.6920 41 1 -0.3602 2.3147 3.6002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604362849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:49 Heat of formation + Delta-G solvation = -81.970702 kcal Electronic energy + Delta-G solvation = -20843.841100 eV Core-core repulsion = 17723.582904 eV Total energy + Delta-G solvation = -3120.258196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96032 -38.57867 -37.36666 -36.05437 -34.33195 -32.17495 -29.34237 -28.02173 -26.45119 -25.56804 -23.66650 -22.99141 -21.22610 -20.22919 -19.34608 -19.20579 -18.44719 -17.02971 -16.73218 -16.07296 -15.51370 -15.09497 -14.53144 -13.93890 -13.73559 -13.65425 -13.55680 -12.84462 -12.58149 -12.38892 -12.16923 -12.12099 -11.73937 -11.47685 -11.29435 -11.05445 -10.94547 -10.78573 -10.58393 -10.41634 -10.38072 -10.17363 -9.99806 -9.82937 -9.67615 -9.27465 -8.37400 -8.25901 -7.95951 -6.24686 -3.95641 1.80122 2.69294 3.46358 3.48369 3.50037 3.68649 4.08676 4.42346 4.58107 4.59906 4.74881 4.94958 5.11869 5.32362 5.41291 5.44106 5.52275 5.59413 5.63253 5.69978 5.71854 5.80524 5.97868 6.09877 6.21364 6.28238 6.40347 6.47197 6.61391 6.66049 6.75710 6.95232 7.02811 7.15433 7.43951 7.54733 7.66472 7.77319 7.80055 8.36795 8.54449 8.98728 9.76144 11.13303 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.044782 B = 0.003654 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.099733 B = 7660.663337 C = 7675.145900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.104 3.896 3 H 0.067 0.933 4 N -0.677 5.677 5 C 0.085 3.915 6 H 0.066 0.934 7 C -0.150 4.150 8 C -0.112 4.112 9 C 0.031 3.969 10 H 0.021 0.979 11 C -0.589 4.589 12 H 0.048 0.952 13 C 0.018 3.982 14 N -0.916 5.916 15 Si 1.066 2.934 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.289 1.289 19 C -0.093 4.093 20 C -0.111 4.111 21 H 0.127 0.873 22 C -0.144 4.144 23 C -0.169 4.169 24 H 0.133 0.867 25 C 0.507 3.493 26 O -0.504 6.504 27 O -0.517 6.517 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.340 0.660 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.271 0.729 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -1.317 20.749 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.005 4.005 3 H 0.085 0.915 4 N -0.308 5.308 5 C -0.025 4.025 6 H 0.084 0.916 7 C -0.190 4.190 8 C -0.151 4.151 9 C 0.012 3.988 10 H 0.039 0.961 11 C -0.628 4.628 12 H 0.066 0.934 13 C -0.186 4.186 14 N -0.553 5.553 15 Si 0.895 3.105 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.215 1.215 19 C -0.131 4.131 20 C -0.129 4.129 21 H 0.145 0.855 22 C -0.180 4.180 23 C -0.188 4.188 24 H 0.151 0.849 25 C 0.350 3.650 26 O -0.392 6.392 27 O -0.329 6.329 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -5.583 -1.795 18.987 19.872 hybrid contribution -0.565 1.221 1.805 2.251 sum -6.148 -0.574 20.792 21.689 Atomic orbital electron populations 1.21785 0.94817 1.01235 1.01320 1.21228 0.95691 0.96541 0.87050 0.91526 1.60784 1.33290 1.33159 1.03556 1.22341 0.95905 0.93184 0.91042 0.91578 1.22913 0.97083 0.99551 0.99403 1.22500 0.99499 0.99870 0.93186 1.19748 0.91108 0.95335 0.92582 0.96132 1.21961 1.31122 0.98247 1.11427 0.93350 1.25768 0.94431 0.98519 0.99910 1.70793 1.43657 1.05439 1.35407 0.83590 0.76315 0.74789 0.75838 1.20942 1.21561 1.21548 1.22305 0.99060 0.99333 0.92441 1.22716 1.00240 1.00324 0.89643 0.85539 1.23264 0.89244 1.03792 1.01749 1.21731 0.99751 0.95818 1.01527 0.84927 1.22276 0.76916 0.87103 0.78747 1.90762 1.63232 1.49731 1.35429 1.84487 1.56116 1.45614 1.46660 0.93533 0.92442 0.92603 0.84164 0.93211 0.93460 0.92804 0.93001 0.91721 0.93585 0.91828 0.86964 0.87599 0.73050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.90 37.16 0.33 -1.47 16 2 C 0.10 1.41 1.87 -67.71 -0.13 1.29 16 3 H 0.07 1.05 5.89 -51.93 -0.31 0.74 16 4 N -0.68 -10.47 6.02 -98.56 -0.59 -11.06 16 5 C 0.08 1.56 2.99 -66.59 -0.20 1.36 16 6 H 0.07 1.23 7.15 -51.93 -0.37 0.86 16 7 C -0.15 -2.86 6.34 -25.61 -0.16 -3.02 16 8 C -0.11 -2.60 5.69 -25.07 -0.14 -2.75 16 9 C 0.03 0.79 2.38 -89.78 -0.21 0.58 16 10 H 0.02 0.56 7.91 -51.93 -0.41 0.15 16 11 C -0.59 -16.74 8.49 -34.44 -0.29 -17.03 16 12 H 0.05 1.37 7.77 -52.49 -0.41 0.96 16 13 C 0.02 0.51 5.36 -17.82 -0.10 0.41 16 14 N -0.92 -27.87 13.49 55.43 0.75 -27.12 16 15 Si 1.07 25.51 29.90 -169.99 -5.08 20.42 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 19 C -0.09 -2.01 5.95 -25.07 -0.15 -2.16 16 20 C -0.11 -1.14 5.06 -90.62 -0.46 -1.59 16 21 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 22 C -0.14 -1.28 9.74 -26.73 -0.26 -1.54 16 23 C -0.17 -1.51 6.23 -91.78 -0.57 -2.08 16 24 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 25 C 0.51 5.31 6.34 36.00 0.23 5.54 16 26 O -0.50 -6.81 13.40 -18.75 -0.25 -7.06 16 27 O -0.52 -4.12 13.42 -39.25 -0.53 -4.65 16 28 H 0.05 0.59 5.18 -51.93 -0.27 0.32 16 29 H 0.06 0.85 7.41 -51.93 -0.38 0.47 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.34 5.05 7.78 -39.29 -0.31 4.74 16 32 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.05 0.81 7.56 -51.93 -0.39 0.42 16 34 H 0.05 1.29 8.04 -51.93 -0.42 0.88 16 35 H 0.05 1.28 6.66 -51.93 -0.35 0.94 16 36 H 0.27 8.17 5.56 -40.82 -0.23 7.94 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.40 7.94 -51.93 -0.41 0.99 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 1.09 8.05 -51.93 -0.42 0.68 16 41 H 0.41 1.64 9.10 45.56 0.41 2.05 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -32.34 323.76 -8.53 -40.87 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.59 Total: 6.18 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.11 Total: -22.47 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.15 Total: -38.18 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.78 Total: -11.71 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.34 -8.53 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604362849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.102 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds