Wall clock time and date at job start Mon Mar 30 2020 00:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47039 * 2 1 4 4 N 1.46895 * 109.47205 * 239.99820 * 2 1 3 5 5 C 1.46904 * 110.99694 * 85.00009 * 4 2 1 6 6 H 1.08996 * 110.43696 * 323.91289 * 5 4 2 7 7 C 1.54265 * 110.48486 * 86.45552 * 5 4 2 8 8 C 1.53880 * 106.60124 * 142.28759 * 7 5 4 9 9 C 1.54266 * 106.59273 * 359.97438 * 8 7 5 10 10 H 1.09005 * 110.48567 * 95.20662 * 9 8 7 11 11 C 1.50706 * 110.48223 * 217.70908 * 9 8 7 12 12 H 1.08005 * 119.99758 * 118.55048 * 11 9 8 13 13 C 1.37871 * 120.00102 * 298.54933 * 11 9 8 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 C 1.54883 * 104.20046 * 336.39018 * 9 8 7 20 20 C 1.53000 * 109.46858 * 120.00075 * 2 1 3 21 21 H 1.09001 * 115.55217 * 85.72189 * 20 2 1 22 22 C 1.53002 * 117.49819 * 231.39186 * 20 2 1 23 23 C 1.52998 * 60.00005 * 107.48892 * 22 20 2 24 24 H 1.08993 * 117.50013 * 252.50681 * 23 22 20 25 25 C 1.50707 * 117.49511 * 107.48907 * 23 22 20 26 26 O 1.20828 * 120.00088 * 291.37605 * 25 23 22 27 27 O 1.34228 * 120.00019 * 111.37753 * 25 23 22 28 28 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47456 * 299.99694 * 1 2 3 30 30 H 1.09006 * 109.47068 * 59.99918 * 1 2 3 31 31 H 1.00895 * 111.00279 * 208.95452 * 4 2 1 32 32 H 1.08996 * 110.03523 * 23.00018 * 7 5 4 33 33 H 1.09006 * 110.07574 * 261.59383 * 7 5 4 34 34 H 1.09000 * 110.03344 * 240.71751 * 8 7 5 35 35 H 1.08995 * 110.07297 * 119.30232 * 8 7 5 36 36 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 37 37 H 1.08996 * 110.75719 * 156.25799 * 19 9 8 38 38 H 1.09002 * 110.75861 * 279.62880 * 19 9 8 39 39 H 1.08999 * 117.49777 * 214.98272 * 22 20 2 40 40 H 1.08998 * 117.49915 * 359.97438 * 22 20 2 41 41 H 0.96700 * 117.00290 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3468 6 1 1.2525 0.9285 -2.3165 7 6 3.4297 0.9738 -2.3652 8 6 3.8453 1.0950 -3.8419 9 6 2.7363 0.4127 -4.6691 10 1 2.0129 1.1495 -5.0183 11 6 3.3318 -0.3336 -5.8352 12 1 3.2033 -1.4031 -5.9142 13 6 4.0404 0.3488 -6.8011 14 7 4.1973 1.6510 -6.7046 15 14 4.7791 -0.5765 -8.2460 16 1 5.4856 0.3790 -9.1366 17 1 5.7410 -1.5908 -7.7448 18 1 3.6972 -1.2530 -9.0057 19 6 2.0736 -0.5736 -3.6757 20 6 2.0399 -0.7213 1.2493 21 1 2.1274 -1.8044 1.1640 22 6 3.0738 0.0053 2.1119 23 6 1.6353 -0.1497 2.6096 24 1 1.0059 0.7401 2.6146 25 6 1.3881 -1.1275 3.7295 26 8 1.5115 -2.3135 3.5343 27 8 1.0307 -0.6808 4.9438 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 2.9172 -1.1205 -1.0287 32 1 4.1797 0.4091 -1.8114 33 1 3.3113 1.9653 -1.9281 34 1 4.7970 0.5890 -4.0047 35 1 3.9283 2.1450 -4.1222 36 1 3.8140 2.1314 -5.9541 37 1 1.0528 -0.8026 -3.9817 38 1 2.6642 -1.4851 -3.5842 39 1 3.8413 -0.5999 2.5944 40 1 3.3910 0.9969 1.7892 41 1 0.8827 -1.3457 5.6301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604362850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:50 Heat of formation + Delta-G solvation = -109.892197 kcal Electronic energy + Delta-G solvation = -20336.430742 eV Core-core repulsion = 17214.961779 eV Total energy + Delta-G solvation = -3121.468963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53585 -39.95630 -38.58891 -37.08037 -35.82627 -33.96445 -30.70977 -29.83386 -27.78714 -26.63352 -25.58122 -24.01160 -22.07828 -21.46039 -20.90102 -20.64591 -19.19762 -18.85519 -18.14091 -16.92400 -16.72033 -16.29239 -15.96012 -15.64659 -15.08787 -14.83522 -14.73801 -14.25037 -14.02085 -13.74484 -13.49149 -13.25253 -12.93732 -12.80188 -12.64302 -12.53525 -12.32274 -12.11533 -11.93296 -11.85531 -11.69025 -11.64001 -11.51792 -11.43367 -11.23806 -11.09269 -10.49871 -10.42755 -9.27031 -8.53552 -6.26875 1.02300 1.53510 1.61099 1.80240 1.96622 2.59548 2.65735 3.13738 3.23762 3.61052 3.73085 3.82175 3.93650 3.97287 4.12174 4.22627 4.34732 4.42069 4.53917 4.60436 4.70992 4.74230 4.83166 4.88319 4.91244 4.95848 5.03649 5.06271 5.10156 5.14817 5.25277 5.38100 5.41821 5.54020 5.55891 5.75805 6.14990 6.23403 6.29533 6.51675 6.73823 6.95995 7.52917 8.84496 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.046943 B = 0.003223 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.329987 B = 8686.814942 C = 8717.364204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.116 3.884 3 H 0.058 0.942 4 N -0.678 5.678 5 C 0.100 3.900 6 H 0.080 0.920 7 C -0.136 4.136 8 C -0.101 4.101 9 C 0.019 3.981 10 H -0.008 1.008 11 C -0.607 4.607 12 H 0.041 0.959 13 C -0.032 4.032 14 N -0.941 5.941 15 Si 1.110 2.890 16 H -0.285 1.285 17 H -0.272 1.272 18 H -0.273 1.273 19 C -0.085 4.085 20 C -0.123 4.123 21 H 0.108 0.892 22 C -0.132 4.132 23 C -0.159 4.159 24 H 0.156 0.844 25 C 0.513 3.487 26 O -0.552 6.552 27 O -0.507 6.507 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.345 0.655 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -1.299 22.435 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.007 3.993 3 H 0.076 0.924 4 N -0.309 5.309 5 C -0.011 4.011 6 H 0.098 0.902 7 C -0.176 4.176 8 C -0.140 4.140 9 C 0.000 4.000 10 H 0.010 0.990 11 C -0.645 4.645 12 H 0.060 0.940 13 C -0.230 4.230 14 N -0.580 5.580 15 Si 0.932 3.068 16 H -0.210 1.210 17 H -0.198 1.198 18 H -0.199 1.199 19 C -0.123 4.123 20 C -0.142 4.142 21 H 0.126 0.874 22 C -0.169 4.169 23 C -0.178 4.178 24 H 0.174 0.826 25 C 0.357 3.643 26 O -0.443 6.443 27 O -0.321 6.321 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.164 0.836 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.146 0.854 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -4.667 -1.389 20.576 21.144 hybrid contribution -0.259 -0.088 1.767 1.788 sum -4.925 -1.476 22.342 22.926 Atomic orbital electron populations 1.21801 0.94142 1.01993 1.01709 1.21104 0.95990 0.95437 0.86761 0.92442 1.60620 1.33886 1.32589 1.03854 1.22281 0.95942 0.92701 0.90135 0.90222 1.22799 0.97955 1.00822 0.96000 1.22079 0.98993 0.98010 0.94939 1.19635 0.93030 0.93877 0.93468 0.99015 1.22403 1.37136 0.95230 1.09755 0.94038 1.27141 0.95779 0.96642 1.03478 1.70899 1.45142 1.08523 1.33387 0.83019 0.76385 0.74261 0.73087 1.21030 1.19780 1.19891 1.22249 0.98677 0.97750 0.93638 1.22474 1.02279 1.00349 0.89089 0.87404 1.23332 0.89457 1.03747 1.00386 1.21815 1.03442 1.01232 0.91345 0.82618 1.22571 0.71169 0.87412 0.83129 1.90735 1.49877 1.19976 1.83686 1.84471 1.80030 1.46280 1.21290 0.93043 0.90711 0.93262 0.83565 0.91362 0.91411 0.95131 0.95333 0.92583 0.93520 0.92935 0.87695 0.85387 0.70918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.24 71.98 0.67 -2.17 16 2 C 0.12 2.42 2.71 44.92 0.12 2.54 16 3 H 0.06 1.12 7.49 -2.39 -0.02 1.10 16 4 N -0.68 -18.24 6.14 -463.96 -2.85 -21.09 16 5 C 0.10 3.24 2.95 46.00 0.14 3.37 16 6 H 0.08 2.53 7.20 -2.39 -0.02 2.51 16 7 C -0.14 -4.58 6.32 31.32 0.20 -4.39 16 8 C -0.10 -4.65 5.28 31.32 0.17 -4.49 16 9 C 0.02 0.95 2.44 -10.47 -0.03 0.93 16 10 H -0.01 -0.46 8.06 -2.38 -0.02 -0.48 16 11 C -0.61 -34.76 8.40 25.60 0.22 -34.55 16 12 H 0.04 2.37 7.77 -2.91 -0.02 2.34 16 13 C -0.03 -1.87 5.33 84.65 0.45 -1.42 16 14 N -0.94 -57.75 13.42 21.45 0.29 -57.46 16 15 Si 1.11 51.09 29.90 68.60 2.05 53.14 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.08 -3.53 5.97 31.89 0.19 -3.34 16 20 C -0.12 -2.29 4.62 -10.79 -0.05 -2.34 16 21 H 0.11 2.49 7.67 -2.39 -0.02 2.47 16 22 C -0.13 -1.87 9.88 30.59 0.30 -1.57 16 23 C -0.16 -2.40 5.50 -11.54 -0.06 -2.46 16 24 H 0.16 1.74 7.61 -2.39 -0.02 1.72 16 25 C 0.51 9.23 8.11 71.24 0.58 9.81 16 26 O -0.55 -14.04 17.02 21.96 0.37 -13.67 16 27 O -0.51 -6.19 13.42 -51.40 -0.69 -6.88 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.16 7.29 -2.39 -0.02 1.15 16 30 H 0.05 1.10 7.45 -2.38 -0.02 1.08 16 31 H 0.34 9.03 7.78 -89.70 -0.70 8.33 16 32 H 0.07 2.08 7.57 -2.39 -0.02 2.07 16 33 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.03 1.52 7.83 -2.39 -0.02 1.50 16 35 H 0.03 1.37 6.82 -2.39 -0.02 1.35 16 36 H 0.26 16.08 5.45 -92.71 -0.50 15.57 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 2.25 8.05 -2.39 -0.02 2.23 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.13 1.43 8.05 -2.39 -0.02 1.41 16 41 H 0.43 1.69 9.10 -74.06 -0.67 1.02 16 Total: -1.00 -70.62 331.73 1.98 -68.64 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.07 Total: 17.38 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 2.88 Total: -40.06 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -2.56 Total: -78.55 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.32 Total: -20.55 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -70.62 1.98 -68.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604362850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.251 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds