Wall clock time and date at job start Mon Mar 30 2020 01:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47239 * 2 1 4 4 C 1.46492 * 120.00316 * 278.79339 * 3 2 1 5 5 C 1.50702 * 109.47306 * 269.99604 * 4 3 2 6 6 H 1.08005 * 119.99433 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00412 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99902 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99989 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47515 * 59.99778 * 9 7 5 11 11 H 1.48497 * 109.47450 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47129 * 299.99951 * 9 7 5 13 13 C 1.34778 * 119.99501 * 98.78864 * 3 2 1 14 14 O 1.21286 * 119.99876 * 186.25369 * 13 3 2 15 15 C 1.50699 * 120.00277 * 6.25675 * 13 3 2 16 16 C 1.52996 * 112.85124 * 63.94778 * 15 13 3 17 17 C 1.50703 * 109.47049 * 65.76656 * 16 15 13 18 18 C 1.50705 * 119.99790 * 177.61358 * 17 16 15 19 19 O 1.20760 * 119.99898 * 357.62140 * 17 16 15 20 20 C 1.53780 * 113.61594 * 195.14458 * 15 13 3 21 21 C 1.53954 * 87.02063 * 89.22886 * 20 15 13 22 22 C 1.53783 * 87.11145 * 25.36370 * 21 20 15 23 23 H 1.08997 * 109.47534 * 196.31587 * 1 2 3 24 24 H 1.09006 * 109.46718 * 316.31164 * 1 2 3 25 25 H 1.09001 * 109.47135 * 76.30885 * 1 2 3 26 26 H 1.09000 * 109.46696 * 240.00746 * 2 1 3 27 27 H 1.08991 * 109.47183 * 120.00713 * 2 1 3 28 28 H 1.09000 * 109.47541 * 29.99661 * 4 3 2 29 29 H 1.09006 * 109.47319 * 149.99781 * 4 3 2 30 30 H 0.96996 * 120.00031 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46961 * 305.77010 * 16 15 13 32 32 H 1.09001 * 109.47325 * 185.76867 * 16 15 13 33 33 H 1.09003 * 109.46605 * 65.00270 * 18 17 16 34 34 H 1.08998 * 109.47002 * 184.99716 * 18 17 16 35 35 H 1.08992 * 109.47120 * 304.99914 * 18 17 16 36 36 H 1.08996 * 113.61652 * 203.74607 * 20 15 13 37 37 H 1.09001 * 113.61527 * 334.64962 * 20 15 13 38 38 H 1.09000 * 113.53565 * 270.81188 * 21 20 15 39 39 H 1.08998 * 113.67098 * 139.93188 * 21 20 15 40 40 H 1.09002 * 113.61016 * 220.09383 * 22 21 20 41 41 H 1.08994 * 113.61649 * 89.18640 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0797 2.1365 -1.2537 5 6 3.4246 1.9275 -1.9008 6 1 4.1602 1.2956 -1.4254 7 6 3.7164 2.5438 -3.0992 8 7 2.8212 3.3145 -3.6773 9 14 5.3831 2.2841 -3.9015 10 1 5.5765 0.8393 -4.1848 11 1 5.4459 3.0508 -5.1717 12 1 6.4524 2.7564 -2.9855 13 6 2.4111 1.9570 1.1536 14 8 2.7075 3.1329 1.1742 15 6 2.4821 1.1398 2.4177 16 6 3.5217 0.0197 2.3435 17 6 4.9006 0.6197 2.2459 18 6 6.1118 -0.2765 2.2140 19 8 5.0350 1.8187 2.1933 20 6 2.5822 1.9893 3.6957 21 6 1.0429 1.9882 3.7206 22 6 1.1084 0.6725 2.9272 23 1 -0.3634 -0.9862 0.2887 24 1 -0.3633 0.7432 0.7099 25 1 -0.3633 0.2432 -0.9985 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.2952 1.7891 -1.9260 29 1 1.9372 3.1971 -1.0463 30 1 3.0263 3.7478 -4.5205 31 1 3.3303 -0.5959 1.4646 32 1 3.4563 -0.5968 3.2401 33 1 6.0959 -0.8765 1.3041 34 1 7.0153 0.3330 2.2316 35 1 6.1002 -0.9340 3.0832 36 1 3.0328 1.4619 4.5364 37 1 3.0165 2.9755 3.5315 38 1 0.5979 2.8125 3.1632 39 1 0.6215 1.8752 4.7195 40 1 0.3546 0.5973 2.1435 41 1 1.1554 -0.2155 3.5574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626431371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:01 Heat of formation + Delta-G solvation = -72.614053 kcal Electronic energy + Delta-G solvation = -22122.375400 eV Core-core repulsion = 19002.522939 eV Total energy + Delta-G solvation = -3119.852461 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09713 -39.87487 -38.30500 -36.98594 -34.89997 -32.51927 -31.64536 -30.31173 -29.01553 -26.58507 -25.76852 -24.69207 -23.79975 -21.62604 -20.53763 -19.17953 -18.58907 -17.56130 -17.39969 -16.75776 -16.59988 -16.24037 -16.06642 -15.58829 -15.49043 -14.69462 -14.56020 -14.22910 -14.07365 -13.55961 -13.43320 -13.29616 -13.24012 -13.17310 -12.99733 -12.85783 -12.69138 -12.52050 -12.42088 -12.22439 -11.88157 -11.76046 -11.62590 -11.28118 -11.10410 -10.67892 -10.36761 -10.34586 -9.38803 -8.25180 -6.40363 1.19136 1.29658 1.35974 1.42539 1.92677 2.29734 2.45084 3.03368 3.12902 3.53943 3.69125 3.78251 3.87230 4.01134 4.14173 4.33752 4.41124 4.44908 4.47018 4.67564 4.72930 4.76283 4.80716 4.83709 4.90987 4.97379 5.01693 5.04034 5.08793 5.20597 5.21258 5.24556 5.32183 5.49666 5.55664 5.56157 5.89791 6.05307 6.67659 6.78069 6.88360 7.26237 7.60950 8.81645 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.007731 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.225771 B = 3620.735487 C = 4356.313888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.252 1.252 11 H -0.276 1.276 12 H -0.284 1.284 13 C 0.524 3.476 14 O -0.596 6.596 15 C -0.101 4.101 16 C -0.159 4.159 17 C 0.327 3.673 18 C -0.197 4.197 19 O -0.495 6.495 20 C -0.116 4.116 21 C -0.142 4.142 22 C -0.118 4.118 23 H 0.106 0.894 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.021 0.979 29 H -0.015 1.015 30 H 0.267 0.733 31 H 0.119 0.881 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.031 0.969 38 H 0.041 0.959 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.007 -17.013 15.488 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.068 0.932 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.176 1.176 11 H -0.201 1.201 12 H -0.210 1.210 13 C 0.313 3.687 14 O -0.476 6.476 15 C -0.104 4.104 16 C -0.195 4.195 17 C 0.205 3.795 18 C -0.254 4.254 19 O -0.370 6.370 20 C -0.153 4.153 21 C -0.179 4.179 22 C -0.155 4.155 23 H 0.125 0.875 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.039 0.961 29 H 0.003 0.997 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.180 0.820 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.833 -15.672 15.277 21.963 hybrid contribution 0.897 1.084 -1.231 1.870 sum -0.935 -14.588 14.046 20.272 Atomic orbital electron populations 1.22301 0.94842 1.03730 1.01411 1.22057 0.95486 0.81567 1.04194 1.48191 1.63140 1.15111 1.07194 1.18602 0.95851 0.90341 0.80921 1.21632 1.00598 1.29624 1.05871 0.93218 1.25888 1.01269 0.94461 0.97733 1.70052 1.36484 1.31759 1.18583 0.85512 0.78783 0.79418 0.77391 1.17607 1.20060 1.21012 1.20685 0.75540 0.87179 0.85313 1.90600 1.50775 1.19770 1.86477 1.21800 0.99815 0.96756 0.92020 1.22521 0.90894 0.97963 1.08145 1.25474 0.94733 0.89680 0.69657 1.22328 0.95381 1.01021 1.06623 1.90575 1.89634 1.20392 1.36433 1.22855 0.97338 0.99343 0.95784 1.22810 0.95581 0.97747 1.01758 1.23423 0.92909 0.98983 1.00197 0.87502 0.92707 0.94296 0.91283 0.86561 0.96062 0.99681 0.92422 0.86313 0.81953 0.87825 0.91858 0.85068 0.86689 0.94970 0.93984 0.88004 0.89971 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 9.26 71.98 0.67 -3.50 16 2 C 0.09 2.69 5.17 86.38 0.45 3.14 16 3 N -0.61 -27.08 2.46 -826.17 -2.04 -29.11 16 4 C 0.26 15.25 5.22 85.64 0.45 15.69 16 5 C -0.54 -32.72 9.39 25.60 0.24 -32.48 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -58.85 13.29 21.45 0.28 -58.56 16 9 Si 0.97 46.84 29.54 68.60 2.03 48.87 16 10 H -0.25 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16 13 C 0.52 23.87 5.31 87.66 0.47 24.33 16 14 O -0.60 -35.30 15.04 2.90 0.04 -35.26 16 15 C -0.10 -3.00 0.08 -52.40 0.00 -3.00 16 16 C -0.16 -3.41 4.64 29.85 0.14 -3.27 16 17 C 0.33 9.60 6.92 29.10 0.20 9.80 16 18 C -0.20 -3.79 10.25 71.24 0.73 -3.06 16 19 O -0.49 -21.62 14.86 4.50 0.07 -21.55 16 20 C -0.12 -3.42 6.04 31.18 0.19 -3.23 16 21 C -0.14 -3.55 7.81 31.18 0.24 -3.31 16 22 C -0.12 -2.38 6.17 31.12 0.19 -2.19 16 23 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.46 6.09 -2.38 -0.01 1.44 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 27 H 0.12 2.52 3.59 -2.39 -0.01 2.51 16 28 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 29 H -0.01 -1.02 7.35 -2.38 -0.02 -1.04 16 30 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.12 2.30 5.54 -2.39 -0.01 2.29 16 32 H 0.16 1.54 8.06 -2.39 -0.02 1.52 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.43 8.12 -2.39 -0.02 1.41 16 35 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 2.45 8.10 -2.39 -0.02 2.44 16 37 H 0.03 1.30 7.32 -2.39 -0.02 1.28 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.76 4.00 -2.39 -0.01 1.75 16 41 H 0.14 1.40 8.04 -2.39 -0.02 1.38 16 Total: -1.00 -92.32 325.61 5.82 -86.50 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.01 Total: 9.41 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 4.42 Total: -0.29 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -1.75 Total: -87.67 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: 0.11 Total: -56.81 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -92.32 5.82 -86.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626431371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.884 kcal (2) G-P(sol) polarization free energy of solvation -92.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds