Wall clock time and date at job start Mon Mar 30 2020 01:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47055 * 54.99253 * 11 10 9 13 13 N 1.46910 * 109.46676 * 294.99711 * 11 10 9 14 14 C 1.50702 * 109.47372 * 175.00159 * 11 10 9 15 15 O 1.21273 * 120.00210 * 99.99744 * 14 11 10 16 16 N 1.34777 * 119.99532 * 279.99611 * 14 11 10 17 17 C 1.46501 * 119.99723 * 180.02562 * 16 14 11 18 18 H 1.08999 * 110.33852 * 324.17446 * 17 16 14 19 19 C 1.54553 * 110.38099 * 86.45532 * 17 16 14 20 20 N 1.48620 * 104.64489 * 142.56703 * 19 17 16 21 21 C 1.48729 * 104.35626 * 320.91374 * 20 19 17 22 22 C 1.53630 * 110.37972 * 201.78614 * 17 16 14 23 23 C 1.52296 * 121.44697 * 97.14943 * 22 17 16 24 24 C 1.52282 * 121.47730 * 24.91218 * 22 17 16 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 27 27 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 28 28 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 29 29 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 30 30 H 1.00896 * 110.99875 * 176.04388 * 13 11 10 31 31 H 1.00892 * 111.00008 * 300.00000 * 13 11 10 32 32 H 0.97005 * 119.99989 * 359.97438 * 16 14 11 33 33 H 1.09006 * 110.40369 * 261.35406 * 19 17 16 34 34 H 1.08997 * 110.40900 * 23.65498 * 19 17 16 35 35 H 1.00898 * 110.99841 * 80.55454 * 20 19 17 36 36 H 1.09002 * 110.44511 * 157.55905 * 21 20 19 37 37 H 1.09002 * 110.45010 * 279.98035 * 21 20 19 38 38 H 1.09005 * 117.51818 * 356.55737 * 23 22 17 39 39 H 1.08997 * 117.51978 * 141.68387 * 23 22 17 40 40 H 1.09008 * 117.51459 * 218.26056 * 24 22 17 41 41 H 1.08999 * 117.52085 * 3.34162 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0067 -0.8431 13 7 0.7282 -5.1188 1.2539 14 6 2.4550 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9582 -6.4586 -1.3313 17 6 3.9052 -7.5698 -1.4518 18 1 4.5572 -7.6082 -0.5791 19 6 3.1479 -8.9069 -1.6173 20 7 3.9685 -9.6867 -2.5803 21 6 4.4263 -8.6800 -3.5746 22 6 4.7351 -7.4285 -2.7369 23 6 6.1264 -6.8092 -2.7201 24 6 4.9635 -6.0723 -3.3909 25 1 -0.4849 0.8400 0.0004 26 1 0.6248 -2.5571 0.8897 27 1 0.6240 -2.5567 -0.8903 28 1 2.8719 -3.6043 -0.8906 29 1 2.8720 -3.6043 0.8894 30 1 0.1638 -5.9552 1.2511 31 1 1.3478 -5.1033 2.0500 32 1 2.6927 -5.9598 -2.1198 33 1 3.0847 -9.4286 -0.6623 34 1 2.1505 -8.7314 -2.0202 35 1 4.7530 -10.1211 -2.1179 36 1 5.3248 -9.0288 -4.0836 37 1 3.6369 -8.4718 -4.2970 38 1 6.4913 -6.4161 -1.7712 39 1 6.8827 -7.2522 -3.3680 40 1 4.9550 -6.0307 -4.4801 41 1 4.5629 -5.1947 -2.8836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515706608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:21 Heat of formation + Delta-G solvation = -18.516783 kcal Electronic energy + Delta-G solvation = -20642.060715 eV Core-core repulsion = 17556.846839 eV Total energy + Delta-G solvation = -3085.213877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.54096 -38.98438 -35.30413 -35.08288 -34.03648 -32.80685 -30.12280 -28.62326 -26.73105 -25.92932 -23.66191 -22.90144 -22.12141 -20.57503 -19.91544 -19.36853 -17.37706 -16.55868 -16.42947 -16.08070 -15.57024 -15.46844 -14.65754 -14.53639 -14.32398 -13.84136 -13.75847 -13.35626 -12.82505 -12.62461 -12.32709 -12.07687 -12.01020 -11.79368 -11.56884 -11.17421 -10.89157 -10.79332 -10.70885 -10.59233 -10.34590 -10.07495 -9.81458 -9.53443 -9.38283 -9.02631 -8.74339 -8.36467 -8.21779 -5.94993 -3.97415 2.72990 3.03416 3.34791 3.39614 3.41772 3.55749 3.86678 4.13195 4.42392 4.48743 4.60741 4.68306 4.86158 5.01236 5.07995 5.10565 5.28328 5.36857 5.39268 5.40414 5.51280 5.59548 5.65146 5.67334 5.79850 5.82204 5.86071 6.17987 6.39267 6.49186 6.62562 6.95132 7.06182 7.35847 7.57818 7.74135 7.78347 7.94460 8.11585 8.28498 8.46709 9.10294 9.65758 11.15861 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.004202 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.768665 B = 6661.180211 C = 7472.018582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.094 4.094 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.554 6.554 16 N -0.720 5.720 17 C 0.146 3.854 18 H 0.090 0.910 19 C 0.034 3.966 20 N -0.664 5.664 21 C 0.078 3.922 22 C -0.183 4.183 23 C -0.158 4.158 24 C -0.157 4.157 25 H 0.260 0.740 26 H 0.035 0.965 27 H 0.013 0.987 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.334 0.666 31 H 0.347 0.653 32 H 0.404 0.596 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.339 0.661 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -17.267 -7.445 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.432 6.432 16 N -0.372 5.372 17 C 0.039 3.961 18 H 0.108 0.892 19 C -0.097 4.097 20 N -0.289 5.289 21 C -0.052 4.052 22 C -0.185 4.185 23 C -0.195 4.195 24 C -0.195 4.195 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.239 0.761 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.876 -17.241 -7.314 20.317 hybrid contribution 1.680 0.866 0.244 1.906 sum 9.556 -16.375 -7.070 20.235 Atomic orbital electron populations 1.69962 1.05948 1.26550 1.50682 1.24984 0.94799 0.99026 0.95442 0.86715 0.79620 0.83449 0.78516 1.20375 1.21301 1.20330 1.21233 0.92820 0.91339 1.50813 0.93091 1.19013 0.93542 0.89785 0.98218 1.21649 0.98835 0.92236 1.00536 1.21842 0.93518 0.93225 0.95137 0.88442 1.58994 1.26887 1.44296 1.03241 1.22812 0.82135 0.85589 0.82476 1.90637 1.60938 1.54417 1.37174 1.46200 1.46129 1.34468 1.10447 1.21677 0.90579 0.87566 0.96314 0.89194 1.23445 0.98216 0.91760 0.96308 1.63360 1.23623 1.27054 1.14887 1.22464 1.00370 0.87697 0.94682 1.22631 1.00079 0.97135 0.98630 1.22927 0.90381 1.03196 1.02987 1.22870 1.02057 0.94282 1.00268 0.93019 0.94657 0.96870 0.92984 0.92912 0.85436 0.83848 0.76088 0.90231 0.89726 0.84623 0.90573 0.89602 0.88575 0.88399 0.88096 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.09 -1.88 4.78 -26.73 -0.13 -2.00 16 11 C 0.08 1.30 3.15 -68.86 -0.22 1.08 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 13 N -0.81 -13.51 8.44 -5.65 -0.05 -13.55 16 14 C 0.48 7.40 7.06 -10.98 -0.08 7.33 16 15 O -0.55 -9.94 15.95 5.56 0.09 -9.85 16 16 N -0.72 -8.76 4.69 -52.70 -0.25 -9.01 16 17 C 0.15 1.61 3.22 -66.79 -0.22 1.40 16 18 H 0.09 1.18 7.65 -51.93 -0.40 0.78 16 19 C 0.03 0.35 7.20 -2.06 -0.01 0.33 16 20 N -0.66 -5.96 7.63 -109.75 -0.84 -6.80 16 21 C 0.08 0.62 7.26 -2.43 -0.02 0.61 16 22 C -0.18 -1.62 2.36 -154.53 -0.37 -1.99 16 23 C -0.16 -1.34 10.27 -27.02 -0.28 -1.62 16 24 C -0.16 -1.38 9.52 -27.02 -0.26 -1.64 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.33 4.85 9.06 -39.29 -0.36 4.50 16 31 H 0.35 5.93 8.58 -39.30 -0.34 5.59 16 32 H 0.40 4.39 7.62 -40.82 -0.31 4.08 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 35 H 0.34 2.63 8.92 -39.29 -0.35 2.28 16 36 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.10 1.04 7.40 -51.93 -0.38 0.66 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -31.63 337.59 -9.08 -40.71 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -6.72 Total: 12.15 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.12 Total: -9.29 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.40 Total: -55.44 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.63 -9.08 -40.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515706608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.193 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds