Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47340 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47055 * 54.99253 * 11 10 9 13 13 N 1.46910 * 109.46676 * 294.99711 * 11 10 9 14 14 C 1.50702 * 109.47372 * 175.00159 * 11 10 9 15 15 O 1.21273 * 120.00210 * 99.99744 * 14 11 10 16 16 N 1.34777 * 119.99532 * 279.99611 * 14 11 10 17 17 C 1.46501 * 119.99723 * 180.02562 * 16 14 11 18 18 H 1.08999 * 110.33852 * 324.17446 * 17 16 14 19 19 C 1.54553 * 110.38099 * 86.45532 * 17 16 14 20 20 N 1.48620 * 104.64489 * 142.56703 * 19 17 16 21 21 C 1.48729 * 104.35626 * 320.91374 * 20 19 17 22 22 C 1.53630 * 110.37972 * 201.78614 * 17 16 14 23 23 C 1.52296 * 121.44697 * 97.14943 * 22 17 16 24 24 C 1.52282 * 121.47730 * 24.91218 * 22 17 16 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 27 27 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 28 28 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 29 29 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 30 30 H 1.00896 * 110.99875 * 176.04388 * 13 11 10 31 31 H 1.00892 * 111.00008 * 300.00000 * 13 11 10 32 32 H 0.97005 * 119.99989 * 359.97438 * 16 14 11 33 33 H 1.09006 * 110.40369 * 261.35406 * 19 17 16 34 34 H 1.08997 * 110.40900 * 23.65498 * 19 17 16 35 35 H 1.00898 * 110.99841 * 80.55454 * 20 19 17 36 36 H 1.09002 * 110.44511 * 157.55905 * 21 20 19 37 37 H 1.09002 * 110.45010 * 279.98035 * 21 20 19 38 38 H 1.09005 * 117.51818 * 356.55737 * 23 22 17 39 39 H 1.08997 * 117.51978 * 141.68387 * 23 22 17 40 40 H 1.09008 * 117.51459 * 218.26056 * 24 22 17 41 41 H 1.08999 * 117.52085 * 3.34162 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0067 -0.8431 13 7 0.7282 -5.1188 1.2539 14 6 2.4550 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9582 -6.4586 -1.3313 17 6 3.9052 -7.5698 -1.4518 18 1 4.5572 -7.6082 -0.5791 19 6 3.1479 -8.9069 -1.6173 20 7 3.9685 -9.6867 -2.5803 21 6 4.4263 -8.6800 -3.5746 22 6 4.7351 -7.4285 -2.7369 23 6 6.1264 -6.8092 -2.7201 24 6 4.9635 -6.0723 -3.3909 25 1 -0.4849 0.8400 0.0004 26 1 0.6248 -2.5571 0.8897 27 1 0.6240 -2.5567 -0.8903 28 1 2.8719 -3.6043 -0.8906 29 1 2.8720 -3.6043 0.8894 30 1 0.1638 -5.9552 1.2511 31 1 1.3478 -5.1033 2.0500 32 1 2.6927 -5.9598 -2.1198 33 1 3.0847 -9.4286 -0.6623 34 1 2.1505 -8.7314 -2.0202 35 1 4.7530 -10.1211 -2.1179 36 1 5.3248 -9.0288 -4.0836 37 1 3.6369 -8.4718 -4.2970 38 1 6.4913 -6.4161 -1.7712 39 1 6.8827 -7.2522 -3.3680 40 1 4.9550 -6.0307 -4.4801 41 1 4.5629 -5.1947 -2.8836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515706608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = -43.507228 kcal Electronic energy + Delta-G solvation = -20643.144382 eV Core-core repulsion = 17556.846839 eV Total energy + Delta-G solvation = -3086.297544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55116 -40.03264 -36.82174 -35.87857 -35.11469 -34.81195 -31.93986 -29.63578 -27.96565 -27.14704 -25.27904 -23.60387 -23.14571 -22.14920 -21.17362 -20.26728 -18.69239 -18.14674 -17.47685 -17.33151 -16.90585 -16.47148 -16.28519 -15.68301 -15.59386 -15.14431 -14.69325 -14.49736 -14.28426 -13.83247 -13.66008 -13.44612 -13.35135 -12.81643 -12.78117 -12.55272 -12.45605 -12.28697 -11.97256 -11.78981 -11.66830 -11.52801 -11.28819 -11.07163 -10.91530 -10.48829 -10.44522 -9.63921 -9.59387 -8.13934 -6.24410 1.41389 1.44240 1.46863 1.52193 2.02365 2.44377 2.77897 3.13196 3.19107 3.38370 3.55192 3.67407 3.81674 3.89392 3.95296 4.09636 4.19196 4.29979 4.36775 4.50534 4.68342 4.71540 4.75965 4.83621 4.91956 4.92977 4.98488 5.01352 5.18240 5.23625 5.31076 5.56194 5.58649 5.83614 5.97947 6.07989 6.29719 6.29815 6.41859 6.51786 6.93965 7.10085 7.43757 8.97091 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023688 B = 0.004202 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.768665 B = 6661.180211 C = 7472.018582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.080 4.080 11 C 0.086 3.914 12 H 0.110 0.890 13 N -0.818 5.818 14 C 0.491 3.509 15 O -0.581 6.581 16 N -0.705 5.705 17 C 0.144 3.856 18 H 0.069 0.931 19 C 0.040 3.960 20 N -0.665 5.665 21 C 0.082 3.918 22 C -0.180 4.180 23 C -0.154 4.154 24 C -0.158 4.158 25 H 0.262 0.738 26 H 0.005 0.995 27 H -0.005 1.005 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.347 0.653 31 H 0.345 0.655 32 H 0.412 0.588 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.346 0.654 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.211 -17.658 -8.961 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.118 4.118 11 C -0.030 4.030 12 H 0.127 0.873 13 N -0.347 5.347 14 C 0.276 3.724 15 O -0.461 6.461 16 N -0.357 5.357 17 C 0.037 3.963 18 H 0.087 0.913 19 C -0.091 4.091 20 N -0.291 5.291 21 C -0.048 4.048 22 C -0.182 4.182 23 C -0.191 4.191 24 C -0.196 4.196 25 H 0.071 0.929 26 H 0.024 0.976 27 H 0.013 0.987 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.369 -17.655 -8.867 21.866 hybrid contribution 1.213 0.958 0.709 1.701 sum 10.583 -16.697 -8.158 21.385 Atomic orbital electron populations 1.70096 1.07637 1.27593 1.51625 1.25888 0.95678 1.02985 0.94938 0.85605 0.78354 0.78656 0.79036 1.19021 1.20916 1.19687 1.21693 0.93309 0.92735 1.50558 0.92673 1.18823 0.93860 0.91305 0.95775 1.21372 0.97693 0.92156 1.00616 1.21634 0.93715 0.92067 0.95565 0.87259 1.58970 1.27195 1.45321 1.03235 1.22382 0.81861 0.85156 0.82993 1.90632 1.61805 1.55349 1.38275 1.46082 1.45409 1.34460 1.09722 1.21746 0.90367 0.87410 0.96791 0.91304 1.23299 0.98160 0.91360 0.96293 1.63351 1.24073 1.27038 1.14637 1.22513 1.01294 0.86751 0.94202 1.22560 1.00184 0.97866 0.97602 1.22990 0.90573 1.02788 1.02753 1.22912 1.02069 0.93388 1.01202 0.92910 0.97640 0.98705 0.91562 0.94082 0.84001 0.84173 0.75081 0.91120 0.90217 0.83758 0.88561 0.89425 0.89913 0.86255 0.86291 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.04 2.05 4.86 29.85 0.15 2.19 16 10 C -0.08 -3.19 4.78 30.59 0.15 -3.05 16 11 C 0.09 2.82 3.15 44.17 0.14 2.96 16 12 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 13 N -0.82 -27.66 8.44 -171.79 -1.45 -29.11 16 14 C 0.49 14.81 7.06 87.66 0.62 15.43 16 15 O -0.58 -20.82 15.95 -3.01 -0.05 -20.87 16 16 N -0.70 -16.54 4.69 -439.03 -2.06 -18.60 16 17 C 0.14 3.04 3.22 45.73 0.15 3.19 16 18 H 0.07 1.79 7.65 -2.39 -0.02 1.77 16 19 C 0.04 0.79 7.20 86.50 0.62 1.41 16 20 N -0.66 -10.65 7.63 -501.14 -3.82 -14.47 16 21 C 0.08 1.09 7.26 86.20 0.63 1.72 16 22 C -0.18 -2.84 2.36 -52.19 -0.12 -2.97 16 23 C -0.15 -2.28 10.27 30.41 0.31 -1.97 16 24 C -0.16 -2.44 9.52 30.40 0.29 -2.15 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 27 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.35 10.05 9.06 -89.70 -0.81 9.24 16 31 H 0.34 11.97 8.58 -89.70 -0.77 11.20 16 32 H 0.41 8.40 7.62 -92.70 -0.71 7.69 16 33 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 35 H 0.35 4.72 8.92 -89.70 -0.80 3.92 16 36 H 0.10 0.94 8.11 -2.39 -0.02 0.92 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.09 1.64 7.40 -2.39 -0.02 1.62 16 Total: -1.00 -67.88 337.59 -3.48 -71.35 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -2.03 Total: 34.90 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 3.62 Total: -13.17 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -7.04 Total: -118.45 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.88 -3.48 -71.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515706608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.847 kcal (2) G-P(sol) polarization free energy of solvation -67.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds