Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 110.32585 * 2 1 4 4 C 1.54603 * 110.37164 * 122.24303 * 2 1 3 5 5 C 1.54011 * 103.87681 * 142.74156 * 4 2 1 6 6 C 1.53947 * 104.58690 * 359.83082 * 5 4 2 7 7 O 1.44477 * 110.36999 * 237.64910 * 2 1 3 8 8 C 1.52376 * 110.25096 * 118.42250 * 5 4 2 9 9 C 1.53105 * 109.52923 * 63.86431 * 8 5 4 10 10 C 1.52997 * 109.40874 * 59.03567 * 9 8 5 11 11 N 1.46897 * 109.45475 * 179.53116 * 10 9 8 12 12 C 1.46894 * 111.00272 * 205.04524 * 11 10 9 13 13 C 1.50703 * 109.47512 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00118 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99966 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47354 * 89.99784 * 17 15 13 19 19 H 1.48499 * 109.47589 * 209.99931 * 17 15 13 20 20 H 1.48510 * 109.47262 * 329.99707 * 17 15 13 21 21 C 1.53000 * 109.56180 * 299.55134 * 10 9 8 22 22 C 1.52374 * 110.24933 * 241.23811 * 5 4 2 23 23 H 1.09000 * 109.47060 * 297.75456 * 1 2 3 24 24 H 1.09004 * 109.46957 * 57.75705 * 1 2 3 25 25 H 1.08994 * 109.46651 * 177.75377 * 1 2 3 26 26 H 1.09001 * 109.46730 * 182.24202 * 3 2 1 27 27 H 1.08994 * 109.47478 * 302.24160 * 3 2 1 28 28 H 1.09002 * 109.46817 * 62.25012 * 3 2 1 29 29 H 1.08999 * 110.54091 * 24.14378 * 4 2 1 30 30 H 1.08992 * 110.54490 * 261.33821 * 4 2 1 31 31 H 1.09005 * 110.39111 * 95.21696 * 6 5 4 32 32 H 1.09001 * 110.39294 * 217.60774 * 6 5 4 33 33 H 1.09004 * 109.45839 * 303.85026 * 8 5 4 34 34 H 1.08995 * 109.46139 * 183.88942 * 8 5 4 35 35 H 1.08996 * 109.48760 * 299.05112 * 9 8 5 36 36 H 1.09001 * 109.48798 * 179.01760 * 9 8 5 37 37 H 1.09002 * 109.45392 * 59.57633 * 10 9 8 38 38 H 1.00897 * 110.99900 * 81.08784 * 11 10 9 39 39 H 1.09010 * 109.47046 * 300.00038 * 12 11 10 40 40 H 1.09000 * 109.47426 * 59.99413 * 12 11 10 41 41 H 0.96994 * 119.99859 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.48012 * 180.41720 * 21 10 9 43 43 H 1.08992 * 109.48670 * 300.45969 * 21 10 9 44 44 H 1.08999 * 109.46144 * 56.14956 * 22 5 4 45 45 H 1.09003 * 109.45661 * 176.12500 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0615 1.4348 0.0000 4 6 2.0682 -0.7732 1.2258 5 6 3.3124 -1.5026 0.6854 6 6 3.3862 -1.0964 -0.7977 7 8 2.0329 -0.7248 -1.1442 8 6 4.5602 -1.0356 1.4248 9 6 4.4552 -1.4240 2.9020 10 6 4.3071 -2.9423 3.0192 11 7 4.2176 -3.3172 4.4367 12 6 4.6622 -4.7018 4.6441 13 6 4.5559 -5.0499 6.1066 14 1 4.1945 -4.3158 6.8114 15 6 4.9209 -6.3052 6.5448 16 7 5.3614 -7.1989 5.6865 17 14 4.7897 -6.7363 8.3575 18 1 3.4451 -7.3020 8.6358 19 1 5.8296 -7.7380 8.7047 20 1 4.9901 -5.5117 9.1734 21 6 3.0376 -3.3908 2.2924 22 6 3.1365 -3.0107 0.8130 23 1 -0.3633 0.4786 0.9094 24 1 -0.3633 0.5483 -0.8692 25 1 -0.3632 -1.0269 -0.0403 26 1 3.1507 1.4187 -0.0402 27 1 1.6737 1.9660 -0.8691 28 1 1.7390 1.9417 0.9095 29 1 1.3282 -1.4906 1.5806 30 1 2.3455 -0.0826 2.0222 31 1 4.0578 -0.2475 -0.9260 32 1 3.7164 -1.9384 -1.4061 33 1 4.6488 0.0475 1.3395 34 1 5.4397 -1.5073 0.9868 35 1 3.5855 -0.9387 3.3447 36 1 5.3558 -1.1051 3.4268 37 1 5.1735 -3.4273 2.5694 38 1 3.2816 -3.1815 4.7882 39 1 4.0327 -5.3764 4.0637 40 1 5.6982 -4.8031 4.3205 41 1 5.6185 -8.0819 5.9948 42 1 2.9295 -4.4716 2.3830 43 1 2.1717 -2.9001 2.7367 44 1 2.2253 -3.3150 0.2981 45 1 3.9926 -3.5153 0.3650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663446763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = -75.722435 kcal Electronic energy + Delta-G solvation = -21537.136465 eV Core-core repulsion = 18552.982308 eV Total energy + Delta-G solvation = -2984.154156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83307 -37.74458 -34.59076 -33.13709 -32.48571 -30.71261 -29.96766 -27.63929 -26.76420 -26.22884 -24.15477 -22.56779 -21.58401 -20.72591 -19.94278 -18.63910 -16.47755 -15.88414 -15.76999 -15.52677 -14.72435 -14.68969 -14.51791 -13.80040 -13.63092 -13.39789 -12.94220 -12.88597 -12.75300 -12.41945 -12.32298 -12.10784 -11.90603 -11.87034 -11.67079 -11.35462 -11.15471 -11.05520 -10.93507 -10.77931 -10.68612 -10.41166 -10.31001 -10.04954 -9.92997 -9.79529 -9.56985 -9.12723 -8.47603 -7.21782 -6.02342 -4.04142 3.31881 3.37989 3.42585 3.76794 4.39385 4.44458 4.59910 4.67000 4.80271 4.91423 4.94757 5.19239 5.26266 5.33426 5.36097 5.38752 5.40753 5.49843 5.55055 5.57971 5.64814 5.68593 5.71215 5.73782 5.75562 5.85520 5.95987 5.99739 6.10878 6.13920 6.17701 6.22797 6.33172 6.37095 6.47220 6.70131 6.74076 6.85217 7.29631 7.46703 7.80678 8.15404 8.43308 8.65393 9.05650 9.60792 11.08715 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039334 B = 0.003672 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.690530 B = 7622.958115 C = 7699.513890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.093 3.907 3 C -0.164 4.164 4 C -0.134 4.134 5 C -0.085 4.085 6 C 0.053 3.947 7 O -0.369 6.369 8 C -0.104 4.104 9 C -0.104 4.104 10 C 0.088 3.912 11 N -0.686 5.686 12 C 0.195 3.805 13 C -0.514 4.514 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.147 4.147 22 C -0.098 4.098 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.327 0.673 39 H -0.014 1.014 40 H 0.026 0.974 41 H 0.261 0.739 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 15.066 -12.822 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 C -0.222 4.222 4 C -0.171 4.171 5 C -0.085 4.085 6 C -0.024 4.024 7 O -0.288 6.288 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.023 4.023 11 N -0.314 5.314 12 C 0.068 3.932 13 C -0.553 4.553 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.186 4.186 22 C -0.136 4.136 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.004 0.996 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.014 15.093 -12.841 20.709 hybrid contribution -0.602 -0.917 0.724 1.315 sum -6.616 14.176 -12.116 19.788 Atomic orbital electron populations 1.21774 0.92838 1.02809 1.02178 1.22417 0.94721 0.91635 0.85886 1.22236 1.01735 0.95911 1.02311 1.23115 0.97228 0.99312 0.97467 1.21474 0.95786 0.96613 0.94676 1.23472 0.84604 0.99446 0.94884 1.89145 1.27425 1.73838 1.38421 1.21492 0.96403 0.99978 0.96322 1.21543 1.02095 0.96346 0.94260 1.21505 0.96237 0.94533 0.89995 1.60748 1.29315 1.28117 1.13264 1.19561 0.95353 0.81914 0.96379 1.21211 1.43299 0.97547 0.93214 0.92045 1.24987 0.95347 0.96337 0.97912 1.69960 1.44424 1.05290 1.34103 0.86501 0.77638 0.78187 0.85093 1.20752 1.21255 1.19775 1.22320 0.99676 1.01471 0.95134 1.21416 1.01615 0.93348 0.97223 0.91249 0.92172 0.91782 0.92132 0.92156 0.91551 0.90343 0.90174 0.92395 0.89296 0.92172 0.91821 0.92305 0.91474 0.91388 0.85615 0.99578 0.95617 0.92949 0.91762 0.92205 0.92111 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 2 C 0.09 0.96 1.22 -89.77 -0.11 0.85 16 3 C -0.16 -1.46 8.66 37.16 0.32 -1.14 16 4 C -0.13 -1.45 4.41 -25.36 -0.11 -1.56 16 5 C -0.09 -0.97 0.69 -154.13 -0.11 -1.07 16 6 C 0.05 0.57 6.31 37.65 0.24 0.81 16 7 O -0.37 -4.57 11.10 -35.23 -0.39 -4.96 16 8 C -0.10 -1.20 4.45 -27.00 -0.12 -1.32 16 9 C -0.10 -1.47 5.33 -26.68 -0.14 -1.61 16 10 C 0.09 1.51 2.45 -67.72 -0.17 1.35 16 11 N -0.69 -14.54 6.24 -107.99 -0.67 -15.21 16 12 C 0.19 5.10 5.24 -4.98 -0.03 5.08 16 13 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 C -0.15 -2.26 4.96 -26.70 -0.13 -2.39 16 22 C -0.10 -1.27 4.45 -27.02 -0.12 -1.39 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.54 6.99 -51.93 -0.36 0.18 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.90 6.40 -51.93 -0.33 0.57 16 30 H 0.08 0.84 6.38 -51.93 -0.33 0.51 16 31 H 0.06 0.57 6.99 -51.93 -0.36 0.21 16 32 H 0.09 0.92 7.85 -51.93 -0.41 0.52 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.80 6.77 -51.93 -0.35 0.45 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.27 7.80 -51.93 -0.40 0.87 16 38 H 0.33 6.69 8.47 -39.29 -0.33 6.36 16 39 H -0.01 -0.38 7.42 -51.92 -0.39 -0.76 16 40 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.06 1.13 7.44 -51.93 -0.39 0.75 16 43 H 0.06 0.88 6.76 -51.93 -0.35 0.53 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -30.00 338.14 -9.02 -39.02 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.20 Total: 2.37 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -0.56 Total: -16.82 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.06 Total: -41.47 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.39 Total: -4.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.00 -9.02 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.705 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds