Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 110.32585 * 2 1 4 4 C 1.54603 * 110.37164 * 122.24303 * 2 1 3 5 5 C 1.54011 * 103.87681 * 142.74156 * 4 2 1 6 6 C 1.53947 * 104.58690 * 359.83082 * 5 4 2 7 7 O 1.44477 * 110.36999 * 237.64910 * 2 1 3 8 8 C 1.52376 * 110.25096 * 118.42250 * 5 4 2 9 9 C 1.53105 * 109.52923 * 63.86431 * 8 5 4 10 10 C 1.52997 * 109.40874 * 59.03567 * 9 8 5 11 11 N 1.46897 * 109.45475 * 179.53116 * 10 9 8 12 12 C 1.46894 * 111.00272 * 205.04524 * 11 10 9 13 13 C 1.50703 * 109.47512 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00118 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99966 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47354 * 89.99784 * 17 15 13 19 19 H 1.48499 * 109.47589 * 209.99931 * 17 15 13 20 20 H 1.48510 * 109.47262 * 329.99707 * 17 15 13 21 21 C 1.53000 * 109.56180 * 299.55134 * 10 9 8 22 22 C 1.52374 * 110.24933 * 241.23811 * 5 4 2 23 23 H 1.09000 * 109.47060 * 297.75456 * 1 2 3 24 24 H 1.09004 * 109.46957 * 57.75705 * 1 2 3 25 25 H 1.08994 * 109.46651 * 177.75377 * 1 2 3 26 26 H 1.09001 * 109.46730 * 182.24202 * 3 2 1 27 27 H 1.08994 * 109.47478 * 302.24160 * 3 2 1 28 28 H 1.09002 * 109.46817 * 62.25012 * 3 2 1 29 29 H 1.08999 * 110.54091 * 24.14378 * 4 2 1 30 30 H 1.08992 * 110.54490 * 261.33821 * 4 2 1 31 31 H 1.09005 * 110.39111 * 95.21696 * 6 5 4 32 32 H 1.09001 * 110.39294 * 217.60774 * 6 5 4 33 33 H 1.09004 * 109.45839 * 303.85026 * 8 5 4 34 34 H 1.08995 * 109.46139 * 183.88942 * 8 5 4 35 35 H 1.08996 * 109.48760 * 299.05112 * 9 8 5 36 36 H 1.09001 * 109.48798 * 179.01760 * 9 8 5 37 37 H 1.09002 * 109.45392 * 59.57633 * 10 9 8 38 38 H 1.00897 * 110.99900 * 81.08784 * 11 10 9 39 39 H 1.09010 * 109.47046 * 300.00038 * 12 11 10 40 40 H 1.09000 * 109.47426 * 59.99413 * 12 11 10 41 41 H 0.96994 * 119.99859 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.48012 * 180.41720 * 21 10 9 43 43 H 1.08992 * 109.48670 * 300.45969 * 21 10 9 44 44 H 1.08999 * 109.46144 * 56.14956 * 22 5 4 45 45 H 1.09003 * 109.45661 * 176.12500 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0615 1.4348 0.0000 4 6 2.0682 -0.7732 1.2258 5 6 3.3124 -1.5026 0.6854 6 6 3.3862 -1.0964 -0.7977 7 8 2.0329 -0.7248 -1.1442 8 6 4.5602 -1.0356 1.4248 9 6 4.4552 -1.4240 2.9020 10 6 4.3071 -2.9423 3.0192 11 7 4.2176 -3.3172 4.4367 12 6 4.6622 -4.7018 4.6441 13 6 4.5559 -5.0499 6.1066 14 1 4.1945 -4.3158 6.8114 15 6 4.9209 -6.3052 6.5448 16 7 5.3614 -7.1989 5.6865 17 14 4.7897 -6.7363 8.3575 18 1 3.4451 -7.3020 8.6358 19 1 5.8296 -7.7380 8.7047 20 1 4.9901 -5.5117 9.1734 21 6 3.0376 -3.3908 2.2924 22 6 3.1365 -3.0107 0.8130 23 1 -0.3633 0.4786 0.9094 24 1 -0.3633 0.5483 -0.8692 25 1 -0.3632 -1.0269 -0.0403 26 1 3.1507 1.4187 -0.0402 27 1 1.6737 1.9660 -0.8691 28 1 1.7390 1.9417 0.9095 29 1 1.3282 -1.4906 1.5806 30 1 2.3455 -0.0826 2.0222 31 1 4.0578 -0.2475 -0.9260 32 1 3.7164 -1.9384 -1.4061 33 1 4.6488 0.0475 1.3395 34 1 5.4397 -1.5073 0.9868 35 1 3.5855 -0.9387 3.3447 36 1 5.3558 -1.1051 3.4268 37 1 5.1735 -3.4273 2.5694 38 1 3.2816 -3.1815 4.7882 39 1 4.0327 -5.3764 4.0637 40 1 5.6982 -4.8031 4.3205 41 1 5.6185 -8.0819 5.9948 42 1 2.9295 -4.4716 2.3830 43 1 2.1717 -2.9001 2.7367 44 1 2.2253 -3.3150 0.2981 45 1 3.9926 -3.5153 0.3650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663446763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = -94.470405 kcal Electronic energy + Delta-G solvation = -21537.949437 eV Core-core repulsion = 18552.982308 eV Total energy + Delta-G solvation = -2984.967129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77585 -38.96817 -36.20171 -34.45532 -33.91528 -31.84672 -31.45617 -28.45914 -28.22785 -27.30886 -25.51526 -23.82472 -23.40523 -21.97418 -20.84017 -19.73949 -18.51694 -16.98858 -16.67456 -16.60531 -16.45061 -15.91017 -15.69147 -15.37257 -14.80110 -14.61152 -14.32648 -13.89351 -13.76492 -13.69931 -13.53819 -13.26186 -13.10199 -12.99587 -12.89311 -12.63378 -12.54073 -12.48260 -12.26556 -12.10505 -12.04792 -11.87966 -11.47027 -11.35986 -11.18980 -11.07758 -10.94800 -10.66224 -10.50214 -9.02053 -8.23017 -6.34497 1.40291 1.42127 1.53976 2.39472 2.96391 3.10098 3.42688 3.62526 3.65965 3.87313 3.93454 4.01970 4.12154 4.23456 4.27137 4.39696 4.42946 4.53148 4.58104 4.67605 4.74056 4.76705 4.81122 4.85813 4.88408 4.92153 4.98188 5.01592 5.04618 5.09276 5.17528 5.21147 5.23371 5.28805 5.29778 5.35372 5.41940 5.52392 5.53273 5.64274 6.03407 6.03535 6.48404 6.75381 6.91580 7.36797 8.88524 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039334 B = 0.003672 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.690530 B = 7622.958115 C = 7699.513890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 C -0.162 4.162 4 C -0.133 4.133 5 C -0.081 4.081 6 C 0.054 3.946 7 O -0.389 6.389 8 C -0.097 4.097 9 C -0.095 4.095 10 C 0.086 3.914 11 N -0.684 5.684 12 C 0.212 3.788 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.264 1.264 21 C -0.137 4.137 22 C -0.092 4.092 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.333 0.667 39 H -0.040 1.040 40 H -0.006 1.006 41 H 0.265 0.735 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 16.970 -12.413 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.050 3.950 3 C -0.219 4.219 4 C -0.171 4.171 5 C -0.081 4.081 6 C -0.023 4.023 7 O -0.309 6.309 8 C -0.135 4.135 9 C -0.133 4.133 10 C -0.024 4.024 11 N -0.313 5.313 12 C 0.084 3.916 13 C -0.575 4.575 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.176 4.176 22 C -0.130 4.130 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.150 0.850 39 H -0.022 1.022 40 H 0.012 0.988 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.633 17.023 -12.447 22.107 hybrid contribution -0.419 -1.517 0.545 1.665 sum -7.052 15.506 -11.902 20.781 Atomic orbital electron populations 1.21805 0.92231 1.02453 1.03174 1.22574 0.95325 0.92247 0.84866 1.22223 1.01785 0.94792 1.03149 1.23111 0.96595 0.99307 0.98038 1.21404 0.96149 0.95023 0.95531 1.23500 0.84530 1.00178 0.94064 1.89135 1.28043 1.74321 1.39402 1.21454 0.96437 1.01500 0.94095 1.21444 1.02182 0.93241 0.96387 1.21615 0.96206 0.96913 0.87666 1.60663 1.29660 1.24707 1.16285 1.19168 0.93034 0.84181 0.95254 1.21581 1.43625 0.98089 0.94165 0.91735 1.25972 0.94592 0.96114 1.03102 1.70095 1.45085 1.05794 1.36561 0.85324 0.78008 0.78141 0.78771 1.19663 1.20731 1.18774 1.22169 0.98991 0.99466 0.97008 1.21355 1.01602 0.95036 0.95018 0.89734 0.91771 0.92788 0.91978 0.91910 0.90227 0.91218 0.89258 0.90813 0.89163 0.89662 0.91810 0.91256 0.92220 0.93610 0.84971 1.02239 0.98808 0.92649 0.94889 0.91200 0.91928 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.85 71.98 0.64 -1.65 16 2 C 0.09 1.63 1.22 -10.24 -0.01 1.62 16 3 C -0.16 -2.38 8.66 71.98 0.62 -1.76 16 4 C -0.13 -2.59 4.41 31.48 0.14 -2.45 16 5 C -0.08 -1.69 0.69 -51.93 -0.04 -1.73 16 6 C 0.05 1.06 6.31 72.30 0.46 1.52 16 7 O -0.39 -8.91 11.10 -148.98 -1.65 -10.56 16 8 C -0.10 -2.02 4.45 30.42 0.14 -1.88 16 9 C -0.09 -2.53 5.33 30.63 0.16 -2.37 16 10 C 0.09 3.01 2.45 44.91 0.11 3.12 16 11 N -0.68 -29.66 6.24 -495.58 -3.09 -32.75 16 12 C 0.21 11.58 5.24 85.56 0.45 12.03 16 13 C -0.54 -31.11 9.32 25.60 0.24 -30.87 16 14 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 15 C 0.00 0.01 5.46 84.66 0.46 0.48 16 16 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 17 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 21 C -0.14 -4.31 4.96 30.62 0.15 -4.16 16 22 C -0.09 -2.36 4.45 30.41 0.14 -2.22 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.89 6.99 -2.39 -0.02 0.87 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.49 6.40 -2.39 -0.02 1.47 16 30 H 0.09 1.58 6.38 -2.39 -0.02 1.57 16 31 H 0.07 1.24 6.99 -2.38 -0.02 1.22 16 32 H 0.09 1.74 7.85 -2.39 -0.02 1.72 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.73 6.77 -2.39 -0.02 1.71 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.79 7.80 -2.39 -0.02 1.77 16 38 H 0.33 13.74 8.47 -89.70 -0.76 12.98 16 39 H -0.04 -2.36 7.42 -2.38 -0.02 -2.38 16 40 H -0.01 -0.37 8.05 -2.39 -0.02 -0.39 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.03 1.22 7.44 -2.39 -0.02 1.20 16 43 H 0.07 2.04 6.76 -2.39 -0.02 2.03 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -65.34 338.14 1.40 -63.94 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.19 Total: 20.08 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 3.65 Total: -30.33 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.81 Total: -89.86 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.65 Total: -10.56 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -65.34 1.40 -63.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.531 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds