Wall clock time and date at job start Mon Mar 30 2020 01:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46991 * 2 1 4 4 C 1.53007 * 109.46961 * 119.99032 * 2 1 3 5 5 N 1.46499 * 109.47228 * 172.86385 * 4 2 1 6 6 C 1.46502 * 120.00280 * 276.39667 * 5 4 2 7 7 C 1.50699 * 109.46993 * 275.99451 * 6 5 4 8 8 H 1.08000 * 119.99891 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99641 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00307 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99814 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47054 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46771 * 120.00320 * 11 9 7 14 14 H 1.48505 * 109.47145 * 240.00123 * 11 9 7 15 15 C 1.34782 * 119.99781 * 96.39077 * 5 4 2 16 16 O 1.21283 * 119.99939 * 5.04589 * 15 5 4 17 17 C 1.50702 * 119.99802 * 185.03587 * 15 5 4 18 18 C 1.52993 * 109.47105 * 66.37108 * 17 15 5 19 19 C 1.52998 * 109.47360 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.46941 * 299.99790 * 19 18 17 21 21 C 1.53001 * 109.47079 * 59.99796 * 20 19 18 22 22 C 1.52994 * 109.47121 * 300.00140 * 21 20 19 23 23 H 1.08993 * 109.47447 * 300.00305 * 1 2 3 24 24 H 1.09001 * 109.46752 * 60.00822 * 1 2 3 25 25 H 1.09010 * 109.46750 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47749 * 239.99245 * 2 1 3 27 27 H 1.08999 * 109.47240 * 185.88170 * 3 2 1 28 28 H 1.09004 * 109.47068 * 305.87169 * 3 2 1 29 29 H 1.08996 * 109.48039 * 65.87288 * 3 2 1 30 30 H 1.09007 * 109.46949 * 52.87014 * 4 2 1 31 31 H 1.08996 * 109.47700 * 292.87027 * 4 2 1 32 32 H 1.08996 * 109.46808 * 35.99838 * 6 5 4 33 33 H 1.09001 * 109.47165 * 155.99315 * 6 5 4 34 34 H 0.97003 * 120.00134 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47039 * 306.36329 * 17 15 5 36 36 H 1.09004 * 109.46757 * 299.99662 * 18 17 15 37 37 H 1.08995 * 109.47675 * 59.99192 * 18 17 15 38 38 H 1.08997 * 109.47152 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.46913 * 59.99760 * 19 18 17 40 40 H 1.09001 * 109.47293 * 299.99737 * 20 19 18 41 41 H 1.08997 * 109.47214 * 179.97438 * 20 19 18 42 42 H 1.09004 * 109.46914 * 179.97438 * 21 20 19 43 43 H 1.09001 * 109.47107 * 59.99827 * 21 20 19 44 44 H 1.08997 * 109.47350 * 299.99957 * 22 21 20 45 45 H 1.09004 * 109.47665 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.4948 -0.8715 1.1668 6 6 4.0744 -1.9908 0.4201 7 6 4.1217 -3.2120 1.3019 8 1 3.7563 -3.1596 2.3169 9 6 4.6306 -4.3962 0.8126 10 7 5.0751 -4.4601 -0.4235 11 14 4.6900 -5.9098 1.9059 12 1 4.1341 -5.5773 3.2422 13 1 3.8848 -6.9959 1.2916 14 1 6.0976 -6.3595 2.0527 15 6 4.3003 0.0200 1.7777 16 8 3.8228 0.8931 2.4710 17 6 5.7941 -0.0682 1.5993 18 6 6.1526 0.2343 0.1431 19 6 7.6692 0.1454 -0.0379 20 6 8.3525 1.1632 0.8775 21 6 7.9940 0.8608 2.3338 22 6 6.4774 0.9496 2.5147 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 3.1248 1.4443 -0.1053 28 1 1.5933 1.9858 -0.8328 29 1 1.7651 1.9252 0.9378 30 1 1.5761 -1.7053 1.3156 31 1 1.7845 -0.1388 2.1347 32 1 3.4610 -2.1991 -0.4564 33 1 5.0847 -1.7320 0.1034 34 1 5.4328 -5.2934 -0.7679 35 1 6.1319 -1.0723 1.8558 36 1 5.6653 -0.4906 -0.5091 37 1 5.8146 1.2383 -0.1134 38 1 7.9245 0.3604 -1.0755 39 1 8.0074 -0.8586 0.2186 40 1 8.0143 2.1672 0.6210 41 1 9.4330 1.0996 0.7489 42 1 8.4813 1.5857 2.9860 43 1 8.3323 -0.1432 2.5903 44 1 6.1391 1.9535 2.2583 45 1 6.2220 0.7346 3.5524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048151193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:47 Heat of formation + Delta-G solvation = -76.894685 kcal Electronic energy + Delta-G solvation = -22157.942342 eV Core-core repulsion = 19173.737353 eV Total energy + Delta-G solvation = -2984.204989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.74796 -37.36052 -35.77128 -34.08203 -32.29024 -30.64459 -30.35345 -27.42529 -26.77618 -25.74458 -23.30186 -22.33266 -22.17470 -19.95372 -19.37060 -18.14262 -16.57417 -16.24225 -15.61477 -14.85177 -14.56448 -14.39779 -14.16399 -13.79487 -13.78346 -13.33755 -12.77761 -12.65361 -12.20556 -12.10811 -11.92821 -11.88819 -11.77395 -11.45406 -11.24767 -10.97951 -10.87473 -10.82775 -10.79147 -10.60689 -10.47423 -10.38182 -10.20039 -10.01968 -10.00833 -9.77928 -9.48353 -8.81073 -8.48762 -7.59163 -6.16845 -4.23175 3.21494 3.30267 3.34472 3.50850 4.02173 4.35279 5.04989 5.06696 5.11363 5.16301 5.29738 5.34477 5.44480 5.58710 5.62586 5.66045 5.83026 5.84599 5.89332 5.92354 5.97564 6.02506 6.07354 6.17985 6.23721 6.32738 6.34340 6.39696 6.43088 6.44768 6.46235 6.53179 6.55967 6.67552 6.68335 6.79270 6.83978 6.92516 7.27701 7.63080 7.78641 8.09612 8.45413 8.82649 9.12417 9.44438 10.89490 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.009158 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.648009 B = 3056.767032 C = 4804.938135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.593 5.593 6 C 0.225 3.775 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.521 3.479 16 O -0.575 6.575 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.095 4.095 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 8.721 -0.382 8.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.106 3.894 7 C -0.574 4.574 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.310 3.690 16 O -0.457 6.457 17 C -0.124 4.124 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.133 4.133 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.889 9.018 -0.170 9.063 hybrid contribution 0.041 -1.184 0.434 1.262 sum 0.930 7.833 0.264 7.893 Atomic orbital electron populations 1.21747 0.95342 1.01564 1.01235 1.21491 0.95224 0.96749 0.99700 1.21730 1.00924 0.95700 1.00874 1.21345 0.81463 1.00241 0.97124 1.48154 1.05343 1.27067 1.51662 1.19705 0.95332 0.82787 0.91618 1.21551 1.41693 0.94848 0.99301 0.92204 1.24916 0.95022 0.98768 0.95076 1.69926 1.41299 1.27099 1.14628 0.86506 0.77827 0.82744 0.80809 1.19714 1.20899 1.20840 1.20480 0.89058 0.80771 0.78733 1.90560 1.77332 1.37104 1.40695 1.21228 0.92221 1.02047 0.96878 1.21691 0.96313 1.01902 0.95296 1.21501 0.95172 0.99775 0.98924 1.21545 0.99455 0.99214 0.95351 1.21555 0.96240 1.01560 0.96324 1.21295 0.93765 0.99042 0.99195 0.92921 0.93032 0.92644 0.91051 0.93083 0.93859 0.92636 0.90874 0.90861 0.95125 0.92589 0.92658 0.87893 0.89646 0.92558 0.92196 0.91420 0.92372 0.92529 0.92385 0.91914 0.91794 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 2 C -0.11 -1.83 3.10 -90.62 -0.28 -2.11 16 3 C -0.13 -2.16 8.29 37.16 0.31 -1.85 16 4 C 0.12 2.32 4.97 -4.04 -0.02 2.30 16 5 N -0.59 -12.45 2.30 -175.05 -0.40 -12.86 16 6 C 0.23 5.26 4.63 -5.19 -0.02 5.24 16 7 C -0.54 -13.92 9.38 -34.44 -0.32 -14.25 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.23 13.29 55.43 0.74 -23.50 16 11 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.52 10.83 5.73 -10.98 -0.06 10.76 16 16 O -0.58 -12.86 14.95 5.56 0.08 -12.78 16 17 C -0.10 -1.88 1.69 -91.77 -0.15 -2.04 16 18 C -0.11 -1.90 4.81 -26.74 -0.13 -2.03 16 19 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 20 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 21 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 22 C -0.09 -1.54 4.52 -26.73 -0.12 -1.66 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 27 H 0.05 0.89 7.12 -51.93 -0.37 0.53 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 30 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.07 1.42 7.17 -51.93 -0.37 1.05 16 32 H 0.03 0.76 7.90 -51.93 -0.41 0.35 16 33 H 0.06 1.32 3.98 -51.93 -0.21 1.11 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.10 2.07 7.68 -51.93 -0.40 1.67 16 36 H 0.09 1.57 5.37 -51.93 -0.28 1.29 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.05 8.03 -51.93 -0.42 0.64 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -27.61 346.16 -8.75 -36.36 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.33 Total: 2.81 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -1.04 Total: -10.83 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.33 Total: -36.35 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.61 -8.75 -36.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.538 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds