Wall clock time and date at job start Mon Mar 30 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47149 * 2 1 4 4 C 1.52997 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47140 * 54.99820 * 4 3 2 6 6 C 1.53006 * 109.47164 * 294.99872 * 4 3 2 7 7 C 1.52999 * 109.47269 * 175.00368 * 4 3 2 8 8 C 1.50704 * 109.47295 * 185.00271 * 7 4 3 9 9 O 1.21279 * 119.99596 * 359.97438 * 8 7 4 10 10 N 1.34778 * 120.00129 * 179.97438 * 8 7 4 11 11 C 1.46502 * 119.99830 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46602 * 90.00071 * 11 10 8 13 13 H 1.07999 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99690 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99909 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47447 * 60.00038 * 16 14 12 18 18 H 1.48500 * 109.47155 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47051 * 299.99737 * 16 14 12 20 20 C 1.46499 * 119.99846 * 359.97438 * 10 8 7 21 21 C 1.52999 * 109.47446 * 90.00081 * 20 10 8 22 22 C 1.52993 * 117.50108 * 243.62243 * 21 20 10 23 23 C 1.52990 * 117.50223 * 174.99902 * 21 20 10 24 24 H 1.08998 * 109.47316 * 300.00445 * 1 2 3 25 25 H 1.09000 * 109.46735 * 60.00478 * 1 2 3 26 26 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47316 * 239.99555 * 2 1 3 28 28 H 1.09000 * 109.46735 * 119.99522 * 2 1 3 29 29 H 1.09006 * 109.47249 * 59.99302 * 3 2 1 30 30 H 1.09001 * 109.47456 * 299.99948 * 3 2 1 31 31 H 1.09001 * 109.47002 * 59.99738 * 6 4 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 6 4 3 33 33 H 1.09000 * 109.47050 * 300.00004 * 6 4 3 34 34 H 1.09000 * 109.46738 * 304.99766 * 7 4 3 35 35 H 1.08994 * 109.47465 * 64.99853 * 7 4 3 36 36 H 1.08997 * 109.47063 * 209.99435 * 11 10 8 37 37 H 1.08993 * 109.47204 * 330.00484 * 11 10 8 38 38 H 0.97002 * 119.99413 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46917 * 210.00112 * 20 10 8 40 40 H 1.09002 * 109.47126 * 329.99709 * 20 10 8 41 41 H 1.09002 * 115.54760 * 29.32260 * 21 20 10 42 42 H 1.09005 * 117.49896 * 359.97438 * 22 21 20 43 43 H 1.09003 * 117.50357 * 145.01486 * 22 21 20 44 44 H 1.09000 * 117.50363 * 214.98193 * 23 21 20 45 45 H 1.09004 * 117.49853 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3084 7 6 4.0801 2.8795 -0.1250 8 6 5.5821 2.8705 -0.2479 9 8 6.1851 1.8184 -0.2358 10 7 6.2551 4.0317 -0.3714 11 6 7.7152 4.0229 -0.4904 12 6 8.1001 3.9366 -1.9449 13 1 7.3337 3.8931 -2.7046 14 6 9.4307 3.9143 -2.3057 15 7 10.3638 3.9688 -1.3806 16 14 9.9078 3.8081 -4.1086 17 1 9.3585 4.9804 -4.8360 18 1 11.3878 3.7990 -4.2293 19 1 9.3564 2.5596 -4.6938 20 6 5.5264 5.3025 -0.3867 21 6 5.3902 5.8296 1.0432 22 6 3.9781 5.9537 1.6188 23 6 4.7589 7.2106 1.2299 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7161 -0.1907 1.3980 32 1 5.1694 0.8335 1.3090 33 1 3.7158 1.4227 2.1499 34 1 3.6458 3.3429 -1.0108 35 1 3.7914 3.4462 0.7601 36 1 8.1202 4.9393 -0.0612 37 1 8.1181 3.1624 0.0437 38 1 11.2999 3.9527 -1.6344 39 1 6.0726 6.0272 -0.9905 40 1 4.5352 5.1480 -0.8130 41 1 6.1897 5.5449 1.7273 42 1 3.1461 5.6602 0.9787 43 1 3.8483 5.7506 2.6819 44 1 5.1427 7.8345 2.0371 45 1 4.4402 7.7436 0.3341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:12 Heat of formation + Delta-G solvation = -43.567696 kcal Electronic energy + Delta-G solvation = -21145.853303 eV Core-core repulsion = 18163.093480 eV Total energy + Delta-G solvation = -2982.759822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39073 -37.34045 -36.45792 -34.34915 -32.65293 -32.35836 -28.57201 -27.21880 -26.47517 -25.73626 -22.99129 -22.28101 -21.61871 -20.62103 -19.83720 -18.19856 -16.51533 -16.43441 -15.52449 -15.29067 -14.99546 -14.75200 -14.29808 -14.03781 -13.80448 -13.36249 -13.22701 -12.74594 -12.33905 -12.30779 -12.07919 -11.76584 -11.52158 -11.42662 -11.37531 -11.29893 -11.17802 -10.87979 -10.83548 -10.61847 -10.46495 -10.36657 -10.30365 -10.25758 -10.05917 -9.77605 -9.58177 -8.69221 -8.40110 -7.59863 -6.01161 -4.05656 3.33485 3.37891 3.40401 3.53827 3.84064 4.07299 4.47322 4.77802 4.91818 4.92675 5.00936 5.05740 5.14422 5.25037 5.31471 5.32944 5.45273 5.52340 5.63757 5.68284 5.69863 5.75959 5.85269 5.88154 5.89266 5.96878 6.00925 6.01761 6.07673 6.13239 6.19374 6.23341 6.25106 6.37300 6.50176 6.65563 6.79456 7.13328 7.49506 7.61569 7.95855 8.27802 8.51002 8.94567 9.19871 9.59470 11.06847 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.005325 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.078108 B = 5256.909441 C = 6501.771270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.075 4.075 5 H 0.076 0.924 6 C -0.151 4.151 7 C -0.138 4.138 8 C 0.507 3.493 9 O -0.539 6.539 10 N -0.597 5.597 11 C 0.247 3.753 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.143 3.857 21 C -0.164 4.164 22 C -0.185 4.185 23 C -0.177 4.177 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.607 1.068 5.158 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.094 4.094 5 H 0.094 0.906 6 C -0.208 4.208 7 C -0.178 4.178 8 C 0.294 3.706 9 O -0.417 6.417 10 N -0.328 5.328 11 C 0.127 3.873 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.019 3.981 21 C -0.183 4.183 22 C -0.222 4.222 23 C -0.215 4.215 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.049 0.512 5.183 17.827 hybrid contribution 0.345 0.174 -0.973 1.047 sum -16.704 0.686 4.210 17.240 Atomic orbital electron populations 1.21782 0.96323 1.01246 1.01547 1.21577 0.95234 0.97303 1.02287 1.21674 0.95299 0.96576 1.01582 1.20881 0.93736 0.95040 0.99775 0.90555 1.21968 1.03589 0.99492 0.95773 1.21818 0.94156 0.98663 1.03154 1.20376 0.89224 0.84013 0.76948 1.90621 1.70280 1.30496 1.50297 1.48204 1.09719 1.04262 1.70651 1.19241 0.72763 0.98165 0.97102 1.21408 0.91872 1.50789 0.92338 0.92602 1.24927 0.96330 0.95133 0.97676 1.69928 1.00369 1.50457 1.32693 0.86579 0.77238 0.78640 0.85078 1.20283 1.21198 1.20218 1.20986 0.96755 0.87131 0.93268 1.22938 0.96339 0.99545 0.99487 1.23037 0.95151 1.02718 1.01285 1.22893 1.04568 0.90837 1.03186 0.92948 0.92942 0.93079 0.92058 0.91730 0.92212 0.92273 0.93261 0.90367 0.93837 0.90043 0.89486 0.95156 0.93972 0.92724 0.89677 0.91490 0.87474 0.88906 0.89245 0.89054 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.29 5.69 -26.73 -0.15 -1.44 16 3 C -0.11 -1.25 4.68 -26.73 -0.13 -1.37 16 4 C -0.08 -1.07 2.04 -90.62 -0.18 -1.25 16 5 H 0.08 1.24 7.96 -51.93 -0.41 0.83 16 6 C -0.15 -2.20 8.69 37.16 0.32 -1.88 16 7 C -0.14 -2.06 3.73 -27.88 -0.10 -2.17 16 8 C 0.51 10.49 7.39 -10.98 -0.08 10.41 16 9 O -0.54 -13.38 13.54 5.56 0.08 -13.31 16 10 N -0.60 -12.61 2.46 -175.06 -0.43 -13.04 16 11 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 12 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 16 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.14 2.34 5.49 -4.04 -0.02 2.32 16 21 C -0.16 -2.30 5.95 -90.63 -0.54 -2.84 16 22 C -0.18 -2.06 9.18 -26.74 -0.25 -2.30 16 23 C -0.18 -2.01 10.25 -26.74 -0.27 -2.28 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.64 6.56 -51.93 -0.34 0.30 16 32 H 0.08 1.41 5.95 -51.93 -0.31 1.10 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 35 H 0.09 1.15 6.84 -51.93 -0.36 0.80 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 39 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 40 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 41 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 42 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -31.67 357.73 -9.02 -40.69 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.29 Total: 0.28 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.48 Total: -10.94 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.31 Total: -39.14 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.67 -9.02 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.873 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds