Wall clock time and date at job start Mon Mar 30 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47149 * 2 1 4 4 C 1.52997 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47140 * 54.99820 * 4 3 2 6 6 C 1.53006 * 109.47164 * 294.99872 * 4 3 2 7 7 C 1.52999 * 109.47269 * 175.00368 * 4 3 2 8 8 C 1.50704 * 109.47295 * 185.00271 * 7 4 3 9 9 O 1.21279 * 119.99596 * 359.97438 * 8 7 4 10 10 N 1.34778 * 120.00129 * 179.97438 * 8 7 4 11 11 C 1.46502 * 119.99830 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46602 * 90.00071 * 11 10 8 13 13 H 1.07999 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99690 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99748 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99909 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47447 * 60.00038 * 16 14 12 18 18 H 1.48500 * 109.47155 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47051 * 299.99737 * 16 14 12 20 20 C 1.46499 * 119.99846 * 359.97438 * 10 8 7 21 21 C 1.52999 * 109.47446 * 90.00081 * 20 10 8 22 22 C 1.52993 * 117.50108 * 243.62243 * 21 20 10 23 23 C 1.52990 * 117.50223 * 174.99902 * 21 20 10 24 24 H 1.08998 * 109.47316 * 300.00445 * 1 2 3 25 25 H 1.09000 * 109.46735 * 60.00478 * 1 2 3 26 26 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47316 * 239.99555 * 2 1 3 28 28 H 1.09000 * 109.46735 * 119.99522 * 2 1 3 29 29 H 1.09006 * 109.47249 * 59.99302 * 3 2 1 30 30 H 1.09001 * 109.47456 * 299.99948 * 3 2 1 31 31 H 1.09001 * 109.47002 * 59.99738 * 6 4 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 6 4 3 33 33 H 1.09000 * 109.47050 * 300.00004 * 6 4 3 34 34 H 1.09000 * 109.46738 * 304.99766 * 7 4 3 35 35 H 1.08994 * 109.47465 * 64.99853 * 7 4 3 36 36 H 1.08997 * 109.47063 * 209.99435 * 11 10 8 37 37 H 1.08993 * 109.47204 * 330.00484 * 11 10 8 38 38 H 0.97002 * 119.99413 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46917 * 210.00112 * 20 10 8 40 40 H 1.09002 * 109.47126 * 329.99709 * 20 10 8 41 41 H 1.09002 * 115.54760 * 29.32260 * 21 20 10 42 42 H 1.09005 * 117.49896 * 359.97438 * 22 21 20 43 43 H 1.09003 * 117.50357 * 145.01486 * 22 21 20 44 44 H 1.09000 * 117.50363 * 214.98193 * 23 21 20 45 45 H 1.09004 * 117.49853 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3084 7 6 4.0801 2.8795 -0.1250 8 6 5.5821 2.8705 -0.2479 9 8 6.1851 1.8184 -0.2358 10 7 6.2551 4.0317 -0.3714 11 6 7.7152 4.0229 -0.4904 12 6 8.1001 3.9366 -1.9449 13 1 7.3337 3.8931 -2.7046 14 6 9.4307 3.9143 -2.3057 15 7 10.3638 3.9688 -1.3806 16 14 9.9078 3.8081 -4.1086 17 1 9.3585 4.9804 -4.8360 18 1 11.3878 3.7990 -4.2293 19 1 9.3564 2.5596 -4.6938 20 6 5.5264 5.3025 -0.3867 21 6 5.3902 5.8296 1.0432 22 6 3.9781 5.9537 1.6188 23 6 4.7589 7.2106 1.2299 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7161 -0.1907 1.3980 32 1 5.1694 0.8335 1.3090 33 1 3.7158 1.4227 2.1499 34 1 3.6458 3.3429 -1.0108 35 1 3.7914 3.4462 0.7601 36 1 8.1202 4.9393 -0.0612 37 1 8.1181 3.1624 0.0437 38 1 11.2999 3.9527 -1.6344 39 1 6.0726 6.0272 -0.9905 40 1 4.5352 5.1480 -0.8130 41 1 6.1897 5.5449 1.7273 42 1 3.1461 5.6602 0.9787 43 1 3.8483 5.7506 2.6819 44 1 5.1427 7.8345 2.0371 45 1 4.4402 7.7436 0.3341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:12 Heat of formation + Delta-G solvation = -60.639137 kcal Electronic energy + Delta-G solvation = -21146.593576 eV Core-core repulsion = 18163.093480 eV Total energy + Delta-G solvation = -2983.500095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94426 -38.47764 -37.59999 -36.05024 -34.58922 -33.49429 -30.31131 -28.64009 -27.45445 -27.30771 -24.84413 -23.16331 -22.68635 -21.77709 -20.93441 -19.74046 -18.60081 -17.96457 -17.15012 -16.59072 -16.31042 -16.07024 -15.82414 -15.15353 -14.90057 -14.60137 -14.37197 -14.23146 -14.04528 -13.68274 -13.33238 -13.11286 -12.93280 -12.79551 -12.61304 -12.58119 -12.45098 -12.26094 -12.25034 -12.18209 -11.80944 -11.72045 -11.55302 -11.41707 -11.22422 -11.21530 -10.83571 -10.64770 -10.34113 -9.38624 -8.22512 -6.37838 1.35064 1.39728 1.47011 1.92334 2.30420 2.46467 2.99536 3.06493 3.68342 3.85706 3.92832 4.02414 4.07374 4.15540 4.30497 4.32649 4.35048 4.47728 4.60076 4.74208 4.77224 4.78806 4.83672 4.86664 4.89313 4.96099 5.01577 5.02928 5.09469 5.10418 5.20252 5.26702 5.28950 5.34910 5.35471 5.36023 5.49608 5.55810 5.60639 5.64938 5.88340 6.06961 6.70275 6.86153 7.28899 7.57110 8.84321 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.005325 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.078108 B = 5256.909441 C = 6501.771270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.104 4.104 4 C -0.074 4.074 5 H 0.047 0.953 6 C -0.148 4.148 7 C -0.122 4.122 8 C 0.495 3.505 9 O -0.593 6.593 10 N -0.603 5.603 11 C 0.264 3.736 12 C -0.543 4.543 13 H 0.053 0.947 14 C 0.007 3.993 15 N -0.930 5.930 16 Si 0.968 3.032 17 H -0.259 1.259 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.143 3.857 21 C -0.195 4.195 22 C -0.162 4.162 23 C -0.163 4.163 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.016 0.984 37 H -0.007 1.007 38 H 0.267 0.733 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.885 2.348 4.528 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.141 4.141 4 C -0.093 4.093 5 H 0.065 0.935 6 C -0.205 4.205 7 C -0.162 4.162 8 C 0.285 3.715 9 O -0.474 6.474 10 N -0.333 5.333 11 C 0.143 3.857 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.792 3.208 17 H -0.183 1.183 18 H -0.203 1.203 19 H -0.203 1.203 20 C 0.020 3.980 21 C -0.214 4.214 22 C -0.199 4.199 23 C -0.201 4.201 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.034 0.966 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.370 1.832 4.562 20.954 hybrid contribution 1.397 -0.235 -0.708 1.583 sum -18.973 1.597 3.854 19.426 Atomic orbital electron populations 1.21748 0.94722 1.01848 1.02215 1.21583 0.96602 0.96772 1.01675 1.21601 0.92053 0.97381 1.03055 1.20877 0.96309 0.93898 0.98226 0.93460 1.21902 1.00705 1.00884 0.96979 1.21829 0.88989 0.99967 1.05400 1.21508 0.91743 0.82824 0.75456 1.90599 1.71933 1.32396 1.52466 1.48213 1.07857 1.06699 1.70565 1.18634 0.76427 0.95123 0.95536 1.21693 0.92291 1.51037 0.93127 0.92866 1.25881 0.96233 0.94425 1.02654 1.70059 1.00793 1.51011 1.35078 0.85467 0.77240 0.78980 0.79124 1.18336 1.20289 1.20341 1.21202 0.97288 0.84460 0.95006 1.22642 0.98109 1.02974 0.97683 1.23181 0.93275 1.01267 1.02134 1.23010 1.03077 0.90020 1.03953 0.92055 0.92450 0.92628 0.93127 0.92077 0.90363 0.91030 0.92075 0.94739 0.91944 0.87511 0.86816 0.96571 0.98866 0.92437 0.91251 0.88082 0.90509 0.86646 0.88262 0.88361 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.13 -2.34 5.69 30.59 0.17 -2.16 16 3 C -0.10 -1.93 4.68 30.59 0.14 -1.79 16 4 C -0.07 -2.01 2.04 -10.79 -0.02 -2.03 16 5 H 0.05 1.56 7.96 -2.39 -0.02 1.54 16 6 C -0.15 -4.27 8.69 71.98 0.63 -3.64 16 7 C -0.12 -3.43 3.73 29.85 0.11 -3.32 16 8 C 0.49 21.03 7.39 87.66 0.65 21.68 16 9 O -0.59 -31.33 13.54 -3.03 -0.04 -31.37 16 10 N -0.60 -26.36 2.46 -826.16 -2.03 -28.39 16 11 C 0.26 14.81 5.16 85.63 0.44 15.25 16 12 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 13 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 14 C 0.01 0.41 5.46 84.65 0.46 0.87 16 15 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 16 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 17 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 C 0.14 4.58 5.49 86.38 0.47 5.06 16 21 C -0.19 -5.29 5.95 -10.80 -0.06 -5.35 16 22 C -0.16 -2.99 9.18 30.59 0.28 -2.71 16 23 C -0.16 -3.23 10.25 30.59 0.31 -2.92 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.14 6.56 -2.39 -0.02 1.12 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.57 6.56 -2.39 -0.02 1.56 16 32 H 0.03 1.30 5.95 -2.39 -0.01 1.29 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 2.50 7.40 -2.39 -0.02 2.48 16 35 H 0.11 2.61 6.84 -2.39 -0.02 2.59 16 36 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 37 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 40 H 0.10 2.50 6.17 -2.39 -0.01 2.48 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.12 1.66 7.88 -2.38 -0.02 1.64 16 43 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -74.28 357.73 5.71 -68.57 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.93 Total: 15.16 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.54 Total: -14.39 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.74 Total: -85.79 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.04 Total: -31.37 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -74.28 5.71 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.933 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds