Wall clock time and date at job start Mon Mar 30 2020 00:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 C 1.53006 * 109.46708 * 64.99557 * 3 2 1 5 5 C 1.53002 * 109.46734 * 186.30455 * 4 3 2 6 6 C 1.52991 * 109.47283 * 184.99510 * 3 2 1 7 7 N 1.46501 * 109.47296 * 63.36578 * 6 3 2 8 8 C 1.46504 * 120.00030 * 263.85456 * 7 6 3 9 9 C 1.50697 * 109.46716 * 269.99652 * 8 7 6 10 10 H 1.07996 * 120.00192 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00103 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00240 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47160 * 59.99451 * 13 11 9 15 15 H 1.48493 * 109.47488 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46897 * 300.00294 * 13 11 9 17 17 C 1.34777 * 120.00090 * 83.84896 * 7 6 3 18 18 O 1.21286 * 120.00041 * 355.41783 * 17 7 6 19 19 C 1.50703 * 120.00147 * 175.42311 * 17 7 6 20 20 H 1.08998 * 115.54823 * 34.32934 * 19 17 7 21 21 C 1.53000 * 117.49766 * 248.62236 * 19 17 7 22 22 C 1.52999 * 60.00114 * 252.51081 * 21 19 17 23 23 H 1.09004 * 117.51994 * 107.48079 * 22 21 19 24 24 C 1.53002 * 117.50004 * 252.51456 * 22 21 19 25 25 H 1.09007 * 109.46813 * 60.00419 * 1 2 3 26 26 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47309 * 300.00167 * 1 2 3 28 28 H 1.09000 * 109.47309 * 239.99833 * 2 1 3 29 29 H 1.09010 * 109.46938 * 120.00098 * 2 1 3 30 30 H 1.08998 * 109.47016 * 304.99822 * 3 2 1 31 31 H 1.08996 * 109.47228 * 306.30503 * 4 3 2 32 32 H 1.08998 * 109.46879 * 66.30530 * 4 3 2 33 33 H 1.08997 * 109.47142 * 303.83250 * 5 4 3 34 34 H 1.08998 * 109.47034 * 63.83355 * 5 4 3 35 35 H 1.08996 * 109.47082 * 183.83073 * 5 4 3 36 36 H 1.09004 * 109.47669 * 303.36368 * 6 3 2 37 37 H 1.09004 * 109.47213 * 183.36246 * 6 3 2 38 38 H 1.08998 * 109.47230 * 29.99493 * 8 7 6 39 39 H 1.09006 * 109.47009 * 149.99898 * 8 7 6 40 40 H 0.97001 * 120.00030 * 180.02562 * 12 11 9 41 41 H 1.08997 * 117.49799 * 145.01839 * 21 19 17 42 42 H 1.09005 * 117.49747 * 359.97438 * 21 19 17 43 43 H 1.09000 * 109.47520 * 128.61827 * 24 22 21 44 44 H 1.09000 * 109.46909 * 8.61824 * 24 22 21 45 45 H 1.08997 * 109.46668 * 248.62303 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1265 1.3074 5 6 2.0059 3.6095 1.2431 6 6 3.5648 1.4443 -0.1256 7 7 3.9494 0.8618 -1.4136 8 6 4.3178 -0.5537 -1.4966 9 6 5.8008 -0.7007 -1.2730 10 1 6.4082 0.1729 -1.0880 11 6 6.3823 -1.9504 -1.3056 12 7 5.6429 -3.0141 -1.5324 13 14 8.2208 -2.1327 -1.0291 14 1 8.5737 -1.6076 0.3144 15 1 8.5942 -3.5674 -1.1131 16 1 8.9558 -1.3676 -2.0682 17 6 3.9643 1.6281 -2.5222 18 8 3.5801 2.7773 -2.4703 19 6 4.4582 1.0570 -3.8265 20 1 4.2408 0.0015 -3.9897 21 6 5.7753 1.6018 -4.3825 22 6 4.4502 1.9773 -5.0488 23 1 4.0874 2.9957 -4.9096 24 6 4.1382 1.3453 -6.4068 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6055 1.9815 -0.8418 31 1 0.5594 2.0269 1.4516 32 1 2.1584 1.6569 2.1403 33 1 3.0705 3.7090 1.0311 34 1 1.4314 4.0938 0.4534 35 1 1.7801 4.0823 2.1988 36 1 3.9968 0.8549 0.6832 37 1 3.9331 2.4685 -0.0656 38 1 3.7779 -1.1150 -0.7340 39 1 4.0590 -0.9393 -2.4828 40 1 6.0520 -3.8933 -1.5549 41 1 6.4249 0.9045 -4.9116 42 1 6.2845 2.3736 -3.8052 43 1 3.1459 0.8951 -6.3787 44 1 4.8793 0.5776 -6.6291 45 1 4.1672 2.1130 -7.1800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104542939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:10 Heat of formation + Delta-G solvation = -43.654048 kcal Electronic energy + Delta-G solvation = -21703.470214 eV Core-core repulsion = 18720.706647 eV Total energy + Delta-G solvation = -2982.763567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.52081 -37.38175 -35.83390 -34.48015 -32.41385 -31.49598 -28.87513 -28.03206 -26.77865 -24.58304 -23.22237 -22.48736 -21.92091 -20.28872 -19.48838 -18.10173 -16.56873 -16.35701 -15.71614 -14.67822 -14.47372 -14.39318 -14.15198 -13.74190 -13.57746 -13.21793 -12.89144 -12.81698 -12.47456 -12.34169 -12.11122 -11.74343 -11.62168 -11.44921 -11.41375 -11.09903 -11.03048 -10.95113 -10.89277 -10.70021 -10.35444 -10.17054 -10.06000 -9.91130 -9.75451 -9.65627 -9.48790 -8.93426 -8.50450 -7.62091 -6.15156 -4.21384 3.24872 3.29293 3.29993 3.34934 3.91073 4.35363 4.43361 5.07066 5.17217 5.17666 5.19285 5.31147 5.32176 5.44527 5.52086 5.61536 5.66483 5.72143 5.75909 5.94752 5.97066 6.02589 6.05566 6.07481 6.12417 6.18989 6.21975 6.26601 6.28629 6.35779 6.42177 6.47776 6.54635 6.63783 6.67972 6.72337 6.84874 6.90080 7.23262 7.61308 7.79966 8.10776 8.40989 8.83719 9.10304 9.45766 10.91445 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.007686 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.563947 B = 3642.138670 C = 4995.923289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.152 4.152 6 C 0.127 3.873 7 N -0.589 5.589 8 C 0.238 3.762 9 C -0.531 4.531 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.544 3.456 18 O -0.577 6.577 19 C -0.165 4.165 20 H 0.125 0.875 21 C -0.139 4.139 22 C -0.141 4.141 23 H 0.109 0.891 24 C -0.119 4.119 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 6.208 -0.614 8.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.121 4.121 4 C -0.154 4.154 5 C -0.209 4.209 6 C 0.003 3.997 7 N -0.318 5.318 8 C 0.118 3.882 9 C -0.570 4.570 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.333 3.667 18 O -0.459 6.459 19 C -0.186 4.186 20 H 0.143 0.857 21 C -0.176 4.176 22 C -0.159 4.159 23 H 0.127 0.873 24 C -0.176 4.176 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.085 6.552 -0.576 8.960 hybrid contribution 1.149 -0.488 0.288 1.281 sum -4.936 6.064 -0.288 7.824 Atomic orbital electron populations 1.21810 0.96705 1.00973 1.01173 1.21634 0.94949 0.96500 1.02830 1.21577 0.96600 0.96071 0.97834 1.21552 1.00861 0.95492 0.97498 1.21808 1.02115 0.96260 1.00737 1.21380 0.93369 0.98870 0.86072 1.48109 1.64360 1.12924 1.06357 1.19497 0.95659 0.74703 0.98356 1.21453 0.93075 0.92941 1.49507 0.92288 1.24912 0.98233 0.95669 0.94964 1.69909 1.35712 0.98519 1.49043 0.86615 0.85290 0.76988 0.78917 1.20237 1.21219 1.20117 1.19535 0.77304 0.85016 0.84895 1.90566 1.50385 1.18687 1.86214 1.22215 1.03604 1.00231 0.92509 0.85730 1.22888 0.89926 1.02503 1.02333 1.22349 1.01350 0.99874 0.92369 0.87250 1.21347 1.01559 1.00115 0.94608 0.93243 0.93192 0.93023 0.90955 0.92142 0.90974 0.92020 0.92159 0.92325 0.92910 0.93452 0.90569 0.91377 0.94251 0.94613 0.92574 0.88322 0.89053 0.92364 0.92460 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.68 37.16 0.36 -1.65 16 2 C -0.12 -1.94 4.71 -26.73 -0.13 -2.07 16 3 C -0.10 -1.64 2.01 -90.62 -0.18 -1.83 16 4 C -0.12 -1.57 5.28 -26.73 -0.14 -1.71 16 5 C -0.15 -2.00 9.77 37.16 0.36 -1.63 16 6 C 0.13 2.37 4.61 -4.05 -0.02 2.35 16 7 N -0.59 -12.45 2.14 -175.06 -0.37 -12.82 16 8 C 0.24 5.58 3.93 -5.19 -0.02 5.56 16 9 C -0.53 -13.73 9.39 -34.44 -0.32 -14.05 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -24.44 13.29 55.43 0.74 -23.71 16 13 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 17 C 0.54 11.62 7.40 -10.98 -0.08 11.54 16 18 O -0.58 -13.14 15.82 5.55 0.09 -13.05 16 19 C -0.16 -3.17 5.06 -91.77 -0.46 -3.64 16 20 H 0.12 2.48 6.40 -51.93 -0.33 2.15 16 21 C -0.14 -2.41 9.88 -26.73 -0.26 -2.67 16 22 C -0.14 -2.29 5.92 -90.62 -0.54 -2.83 16 23 H 0.11 1.86 7.67 -51.93 -0.40 1.47 16 24 C -0.12 -1.57 10.19 37.16 0.38 -1.19 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 28 H 0.07 1.32 5.96 -51.93 -0.31 1.01 16 29 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.07 1.31 7.97 -51.93 -0.41 0.89 16 31 H 0.06 0.76 6.29 -51.93 -0.33 0.43 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.83 6.38 -51.93 -0.33 0.50 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.07 1.30 5.93 -51.93 -0.31 0.99 16 38 H 0.04 0.96 6.63 -51.93 -0.34 0.62 16 39 H 0.04 0.88 6.08 -51.93 -0.32 0.56 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.10 1.59 8.05 -51.93 -0.42 1.18 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -27.82 354.52 -8.39 -36.21 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.01 Total: 4.68 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.15 Total: -12.20 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.36 Total: -36.53 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.82 -8.39 -36.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104542939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.446 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds