Wall clock time and date at job start Mon Mar 30 2020 00:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 C 1.53006 * 109.46708 * 64.99557 * 3 2 1 5 5 C 1.53002 * 109.46734 * 186.30455 * 4 3 2 6 6 C 1.52991 * 109.47283 * 184.99510 * 3 2 1 7 7 N 1.46501 * 109.47296 * 63.36578 * 6 3 2 8 8 C 1.46504 * 120.00030 * 263.85456 * 7 6 3 9 9 C 1.50697 * 109.46716 * 269.99652 * 8 7 6 10 10 H 1.07996 * 120.00192 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00103 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00240 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47160 * 59.99451 * 13 11 9 15 15 H 1.48493 * 109.47488 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46897 * 300.00294 * 13 11 9 17 17 C 1.34777 * 120.00090 * 83.84896 * 7 6 3 18 18 O 1.21286 * 120.00041 * 355.41783 * 17 7 6 19 19 C 1.50703 * 120.00147 * 175.42311 * 17 7 6 20 20 H 1.08998 * 115.54823 * 34.32934 * 19 17 7 21 21 C 1.53000 * 117.49766 * 248.62236 * 19 17 7 22 22 C 1.52999 * 60.00114 * 252.51081 * 21 19 17 23 23 H 1.09004 * 117.51994 * 107.48079 * 22 21 19 24 24 C 1.53002 * 117.50004 * 252.51456 * 22 21 19 25 25 H 1.09007 * 109.46813 * 60.00419 * 1 2 3 26 26 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47309 * 300.00167 * 1 2 3 28 28 H 1.09000 * 109.47309 * 239.99833 * 2 1 3 29 29 H 1.09010 * 109.46938 * 120.00098 * 2 1 3 30 30 H 1.08998 * 109.47016 * 304.99822 * 3 2 1 31 31 H 1.08996 * 109.47228 * 306.30503 * 4 3 2 32 32 H 1.08998 * 109.46879 * 66.30530 * 4 3 2 33 33 H 1.08997 * 109.47142 * 303.83250 * 5 4 3 34 34 H 1.08998 * 109.47034 * 63.83355 * 5 4 3 35 35 H 1.08996 * 109.47082 * 183.83073 * 5 4 3 36 36 H 1.09004 * 109.47669 * 303.36368 * 6 3 2 37 37 H 1.09004 * 109.47213 * 183.36246 * 6 3 2 38 38 H 1.08998 * 109.47230 * 29.99493 * 8 7 6 39 39 H 1.09006 * 109.47009 * 149.99898 * 8 7 6 40 40 H 0.97001 * 120.00030 * 180.02562 * 12 11 9 41 41 H 1.08997 * 117.49799 * 145.01839 * 21 19 17 42 42 H 1.09005 * 117.49747 * 359.97438 * 21 19 17 43 43 H 1.09000 * 109.47520 * 128.61827 * 24 22 21 44 44 H 1.09000 * 109.46909 * 8.61824 * 24 22 21 45 45 H 1.08997 * 109.46668 * 248.62303 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6351 2.1265 1.3074 5 6 2.0059 3.6095 1.2431 6 6 3.5648 1.4443 -0.1256 7 7 3.9494 0.8618 -1.4136 8 6 4.3178 -0.5537 -1.4966 9 6 5.8008 -0.7007 -1.2730 10 1 6.4082 0.1729 -1.0880 11 6 6.3823 -1.9504 -1.3056 12 7 5.6429 -3.0141 -1.5324 13 14 8.2208 -2.1327 -1.0291 14 1 8.5737 -1.6076 0.3144 15 1 8.5942 -3.5674 -1.1131 16 1 8.9558 -1.3676 -2.0682 17 6 3.9643 1.6281 -2.5222 18 8 3.5801 2.7773 -2.4703 19 6 4.4582 1.0570 -3.8265 20 1 4.2408 0.0015 -3.9897 21 6 5.7753 1.6018 -4.3825 22 6 4.4502 1.9773 -5.0488 23 1 4.0874 2.9957 -4.9096 24 6 4.1382 1.3453 -6.4068 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6055 1.9815 -0.8418 31 1 0.5594 2.0269 1.4516 32 1 2.1584 1.6569 2.1403 33 1 3.0705 3.7090 1.0311 34 1 1.4314 4.0938 0.4534 35 1 1.7801 4.0823 2.1988 36 1 3.9968 0.8549 0.6832 37 1 3.9331 2.4685 -0.0656 38 1 3.7779 -1.1150 -0.7340 39 1 4.0590 -0.9393 -2.4828 40 1 6.0520 -3.8933 -1.5549 41 1 6.4249 0.9045 -4.9116 42 1 6.2845 2.3736 -3.8052 43 1 3.1459 0.8951 -6.3787 44 1 4.8793 0.5776 -6.6291 45 1 4.1672 2.1130 -7.1800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104542939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:10 Heat of formation + Delta-G solvation = -55.970122 kcal Electronic energy + Delta-G solvation = -21704.004279 eV Core-core repulsion = 18720.706647 eV Total energy + Delta-G solvation = -2983.297632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15472 -38.76724 -37.30711 -36.22345 -34.36033 -32.65441 -30.28561 -29.46973 -28.46151 -25.94669 -25.10328 -23.78551 -23.34406 -21.62726 -20.82389 -19.75505 -18.54880 -18.02056 -17.34441 -16.48070 -16.06004 -15.81626 -15.44601 -15.04697 -14.94575 -14.55520 -14.29068 -14.27224 -14.00918 -13.70787 -13.58611 -13.35666 -12.95630 -12.88653 -12.79496 -12.67491 -12.64370 -12.29826 -12.27170 -12.12830 -12.03597 -11.75519 -11.46141 -11.36143 -11.23275 -11.17381 -10.92164 -10.66126 -10.47027 -9.37966 -8.17794 -6.31491 1.42071 1.42575 1.50248 1.66133 2.27565 2.45105 2.97846 3.12050 3.65280 3.86066 3.91404 3.94735 4.01741 4.04637 4.25161 4.37346 4.43410 4.45526 4.50923 4.60165 4.72479 4.76890 4.79551 4.86402 4.92195 4.93369 4.95365 4.99268 5.06332 5.09329 5.14353 5.17887 5.23773 5.25576 5.30758 5.42284 5.46282 5.48506 5.54061 5.68665 5.90850 6.09994 6.59115 6.83956 7.32941 7.44213 8.87333 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.007686 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.563947 B = 3642.138670 C = 4995.923289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.110 4.110 5 C -0.150 4.150 6 C 0.123 3.877 7 N -0.591 5.591 8 C 0.257 3.743 9 C -0.540 4.540 10 H 0.049 0.951 11 C 0.024 3.976 12 N -0.920 5.920 13 Si 0.952 3.048 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.271 1.271 17 C 0.538 3.462 18 O -0.595 6.595 19 C -0.192 4.192 20 H 0.114 0.886 21 C -0.137 4.137 22 C -0.117 4.117 23 H 0.103 0.897 24 C -0.116 4.116 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.267 0.733 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 6.596 -0.568 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.110 4.110 4 C -0.148 4.148 5 C -0.207 4.207 6 C 0.000 4.000 7 N -0.319 5.319 8 C 0.137 3.863 9 C -0.579 4.579 10 H 0.067 0.933 11 C -0.177 4.177 12 N -0.559 5.559 13 Si 0.778 3.222 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.196 1.196 17 C 0.328 3.672 18 O -0.478 6.478 19 C -0.213 4.213 20 H 0.132 0.868 21 C -0.174 4.174 22 C -0.135 4.135 23 H 0.121 0.879 24 C -0.173 4.173 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.135 6.948 -0.525 9.284 hybrid contribution 1.151 -0.586 0.282 1.322 sum -4.984 6.362 -0.243 8.086 Atomic orbital electron populations 1.21757 0.94355 1.01835 1.02043 1.21578 0.97015 0.95831 1.01298 1.21460 0.94326 0.96388 0.98851 1.21535 1.02118 0.95390 0.95772 1.21783 1.00931 0.96127 1.01844 1.21522 0.95387 0.98141 0.84920 1.48112 1.64335 1.12109 1.07382 1.19106 0.94448 0.75792 0.96993 1.21606 0.94023 0.92728 1.49496 0.93302 1.25587 1.02098 0.95332 0.94645 1.70000 1.37316 0.98899 1.49703 0.85696 0.80580 0.77100 0.78849 1.19964 1.20672 1.19584 1.19921 0.76924 0.84827 0.85577 1.90538 1.51320 1.19349 1.86630 1.22196 1.05891 1.00240 0.92957 0.86816 1.22972 0.89919 1.02358 1.02174 1.22442 0.99604 0.98874 0.92606 0.87919 1.21384 1.01882 1.00902 0.93121 0.93473 0.92394 0.90982 0.94002 0.92158 0.92940 0.90065 0.91345 0.93911 0.93516 0.91036 0.90983 0.91884 0.95490 0.95978 0.92403 0.86943 0.89719 0.92014 0.91841 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.68 71.98 0.70 -2.96 16 2 C -0.12 -3.84 4.71 30.59 0.14 -3.70 16 3 C -0.09 -2.96 2.01 -10.79 -0.02 -2.98 16 4 C -0.11 -2.81 5.28 30.60 0.16 -2.65 16 5 C -0.15 -3.74 9.77 71.98 0.70 -3.04 16 6 C 0.12 4.73 4.61 86.38 0.40 5.13 16 7 N -0.59 -25.85 2.14 -826.14 -1.76 -27.62 16 8 C 0.26 12.50 3.93 85.63 0.34 12.84 16 9 C -0.54 -28.35 9.39 25.60 0.24 -28.11 16 10 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 11 C 0.02 1.24 5.46 84.66 0.46 1.70 16 12 N -0.92 -50.68 13.29 21.45 0.28 -50.39 16 13 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 17 C 0.54 23.62 7.40 87.66 0.65 24.27 16 18 O -0.59 -27.68 15.82 -3.05 -0.05 -27.73 16 19 C -0.19 -7.50 5.06 -11.54 -0.06 -7.56 16 20 H 0.11 4.67 6.40 -2.39 -0.02 4.66 16 21 C -0.14 -4.69 9.88 30.59 0.30 -4.39 16 22 C -0.12 -3.70 5.92 -10.79 -0.06 -3.76 16 23 H 0.10 3.43 7.67 -2.38 -0.02 3.41 16 24 C -0.12 -2.82 10.19 71.98 0.73 -2.09 16 25 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.07 1.55 6.44 -2.39 -0.02 1.54 16 28 H 0.04 1.58 5.96 -2.39 -0.01 1.57 16 29 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.05 1.93 7.97 -2.39 -0.02 1.91 16 31 H 0.08 1.78 6.29 -2.39 -0.02 1.77 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.19 6.38 -2.39 -0.02 1.18 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 2.79 8.03 -2.39 -0.02 2.77 16 37 H 0.06 2.47 5.93 -2.39 -0.01 2.46 16 38 H 0.03 1.38 6.63 -2.39 -0.02 1.36 16 39 H 0.02 1.14 6.08 -2.38 -0.01 1.12 16 40 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.11 3.51 8.05 -2.39 -0.02 3.49 16 42 H 0.08 2.99 8.14 -2.38 -0.02 2.98 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.48 7.90 -2.39 -0.02 1.46 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -59.48 354.52 6.12 -53.36 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.94 Total: 25.73 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.68 Total: -17.30 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.48 Total: -78.01 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.73 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -59.48 6.12 -53.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104542939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.609 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds