Wall clock time and date at job start Mon Mar 30 2020 00:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 C 1.53000 * 109.46952 * 119.99503 * 2 1 3 5 5 C 1.53000 * 109.47252 * 175.00023 * 4 2 1 6 6 N 1.46504 * 109.46913 * 179.97438 * 5 4 2 7 7 C 1.46496 * 120.00275 * 269.99798 * 6 5 4 8 8 C 1.50703 * 109.47458 * 270.00554 * 7 6 5 9 9 H 1.07997 * 119.99364 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99878 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00456 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99863 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47206 * 59.99707 * 12 10 8 14 14 H 1.48496 * 109.47401 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47049 * 299.99739 * 12 10 8 16 16 C 1.34777 * 119.99858 * 90.00448 * 6 5 4 17 17 O 1.21279 * 120.00166 * 180.02562 * 16 6 5 18 18 C 1.50706 * 120.00142 * 359.97438 * 16 6 5 19 19 C 1.52999 * 109.46957 * 180.02562 * 18 16 6 20 20 C 1.53006 * 109.46626 * 180.02562 * 19 18 16 21 21 C 1.53003 * 117.49663 * 243.74292 * 20 19 18 22 22 C 1.53002 * 117.49643 * 175.08260 * 20 19 18 23 23 H 1.08999 * 109.47409 * 300.00719 * 1 2 3 24 24 H 1.09007 * 109.47092 * 60.00242 * 1 2 3 25 25 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47409 * 239.99281 * 2 1 3 27 27 H 1.08998 * 109.47169 * 59.99749 * 3 2 1 28 28 H 1.09002 * 109.46865 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46912 * 299.99245 * 3 2 1 30 30 H 1.09006 * 109.47061 * 54.99855 * 4 2 1 31 31 H 1.09005 * 109.47152 * 295.00038 * 4 2 1 32 32 H 1.08994 * 109.47070 * 60.00351 * 5 4 2 33 33 H 1.08996 * 109.47306 * 300.00095 * 5 4 2 34 34 H 1.09002 * 109.47055 * 30.00737 * 7 6 5 35 35 H 1.09004 * 109.47419 * 150.00116 * 7 6 5 36 36 H 0.96999 * 120.00041 * 180.02562 * 11 10 8 37 37 H 1.08993 * 109.46700 * 59.99973 * 18 16 6 38 38 H 1.09000 * 109.46974 * 300.00347 * 18 16 6 39 39 H 1.08993 * 109.47839 * 60.00178 * 19 18 16 40 40 H 1.09000 * 109.47160 * 299.99740 * 19 18 16 41 41 H 1.09002 * 115.55153 * 29.41498 * 20 19 18 42 42 H 1.08998 * 117.49856 * 0.02562 * 21 20 19 43 43 H 1.09000 * 117.49861 * 145.02337 * 21 20 19 44 44 H 1.08993 * 117.50251 * 214.97577 * 22 20 19 45 45 H 1.09003 * 117.49715 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5647 -0.8310 1.1881 6 7 4.0530 -1.5210 2.3847 7 6 4.4014 -0.7527 3.5824 8 6 5.8554 -0.3608 3.5226 9 1 6.4595 -0.6550 2.6771 10 6 6.4144 0.3724 4.5476 11 7 5.6791 0.7293 5.5779 12 14 8.2168 0.8576 4.4738 13 1 8.4569 1.6880 3.2664 14 1 8.5703 1.6354 5.6884 15 1 9.0564 -0.3656 4.4083 16 6 4.1818 -2.8626 2.3836 17 8 4.5855 -3.4339 3.3743 18 6 3.8229 -3.6530 1.1516 19 6 4.0584 -5.1418 1.4144 20 6 3.6946 -5.9441 0.1634 21 6 2.5318 -6.9326 0.2715 22 6 3.9703 -7.4490 0.1845 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6766 1.9563 0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6052 -1.7197 1.2953 31 1 1.7515 -0.1581 2.1370 32 1 3.9994 0.1675 1.1422 33 1 3.8532 -1.3940 0.3005 34 1 3.7848 0.1449 3.6304 35 1 4.2256 -1.3621 4.4689 36 1 6.0724 1.2454 6.2989 37 1 4.4449 -3.3281 0.3176 38 1 2.7733 -3.4890 0.9077 39 1 3.4362 -5.4665 2.2483 40 1 5.1079 -5.3061 1.6586 41 1 3.8248 -5.4218 -0.7844 42 1 2.0257 -7.0110 1.2337 43 1 1.8972 -7.0610 -0.6053 44 1 4.2813 -7.9168 -0.7495 45 1 4.4103 -7.8674 1.0897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115368907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:51 Heat of formation + Delta-G solvation = -46.830810 kcal Electronic energy + Delta-G solvation = -20905.539741 eV Core-core repulsion = 17922.638419 eV Total energy + Delta-G solvation = -2982.901321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.21825 -37.48770 -36.69914 -34.43597 -32.69016 -31.76295 -29.01466 -27.27368 -26.99481 -24.74938 -23.22316 -22.43377 -22.13534 -20.30017 -19.84978 -18.18592 -16.43955 -16.26811 -15.80937 -15.29318 -15.07108 -14.68852 -14.25635 -14.13718 -13.80048 -13.60139 -12.97619 -12.63077 -12.38956 -12.14893 -12.12383 -11.95626 -11.63844 -11.58518 -11.27841 -11.14767 -11.12966 -11.06762 -10.83737 -10.76252 -10.54774 -10.48134 -10.32149 -10.21798 -10.08494 -9.81461 -9.58558 -8.78583 -8.39970 -7.58001 -6.00854 -4.05407 3.33492 3.37966 3.40424 3.53104 3.76778 3.99313 4.47194 4.68111 4.91028 4.93623 4.95401 4.99557 5.04816 5.19744 5.32866 5.42395 5.44222 5.52662 5.58277 5.66222 5.66987 5.73365 5.79995 5.84117 5.86364 5.92812 5.94838 6.05056 6.07232 6.09006 6.20144 6.21476 6.30590 6.34614 6.52791 6.53251 6.59855 7.13032 7.49699 7.61618 7.96027 8.28191 8.50833 8.94572 9.18212 9.59679 11.07118 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.006015 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.248956 B = 4653.750583 C = 6644.175169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.133 4.133 5 C 0.112 3.888 6 N -0.599 5.599 7 C 0.247 3.753 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.503 3.497 17 O -0.545 6.545 18 C -0.136 4.136 19 C -0.073 4.073 20 C -0.149 4.149 21 C -0.183 4.183 22 C -0.183 4.183 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 -6.286 -14.365 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.172 4.172 5 C -0.013 4.013 6 N -0.330 5.330 7 C 0.127 3.873 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.290 3.710 17 O -0.423 6.423 18 C -0.176 4.176 19 C -0.111 4.111 20 C -0.168 4.168 21 C -0.220 4.220 22 C -0.220 4.220 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.922 -6.462 -13.630 17.525 hybrid contribution 0.964 0.436 -0.065 1.060 sum -7.958 -6.026 -13.694 16.946 Atomic orbital electron populations 1.21832 0.95552 1.01427 1.01501 1.21055 0.95407 0.96551 0.98202 1.21910 1.01706 0.95773 1.01425 1.22118 0.96522 1.00459 0.98103 1.21513 0.93044 0.98856 0.87858 1.48244 1.63317 1.05924 1.15479 1.19231 0.95369 0.90523 0.82134 1.21403 0.95491 1.33700 1.05760 0.92609 1.24922 0.98075 0.95939 0.95120 1.69923 1.36146 1.38348 1.09037 0.86585 0.85162 0.78530 0.77289 1.20278 1.21196 1.20218 1.20418 0.78582 0.82731 0.89295 1.90657 1.46353 1.69613 1.35650 1.21691 1.02775 0.95547 0.97633 1.20915 1.02697 0.92416 0.95090 1.22395 1.02895 0.91385 1.00078 1.23044 0.91255 1.04795 1.02936 1.22960 0.99147 0.96910 1.03013 0.92707 0.93039 0.92933 0.91399 0.92523 0.92007 0.93230 0.92215 0.91308 0.89934 0.91784 0.95175 0.94041 0.92727 0.89712 0.89695 0.91231 0.90873 0.87936 0.88806 0.89193 0.89117 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 37.16 0.34 -1.10 16 2 C -0.09 -1.03 2.92 -90.62 -0.26 -1.29 16 3 C -0.15 -1.71 8.95 37.16 0.33 -1.37 16 4 C -0.13 -1.83 5.01 -26.73 -0.13 -1.96 16 5 C 0.11 1.80 4.97 -4.04 -0.02 1.78 16 6 N -0.60 -12.71 2.46 -175.06 -0.43 -13.14 16 7 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 8 C -0.52 -15.03 9.39 -34.44 -0.32 -15.35 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 12 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 C 0.50 10.55 7.67 -10.98 -0.08 10.47 16 17 O -0.54 -13.94 15.56 5.56 0.09 -13.86 16 18 C -0.14 -2.03 4.21 -27.88 -0.12 -2.15 16 19 C -0.07 -1.05 4.78 -26.73 -0.13 -1.18 16 20 C -0.15 -1.68 5.73 -90.61 -0.52 -2.20 16 21 C -0.18 -1.85 10.18 -26.69 -0.27 -2.12 16 22 C -0.18 -1.87 10.26 -26.69 -0.27 -2.15 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.79 7.22 -51.93 -0.37 0.42 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.41 6.49 -51.93 -0.34 1.07 16 33 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 1.13 7.40 -51.93 -0.38 0.75 16 38 H 0.08 1.10 7.18 -51.93 -0.37 0.73 16 39 H 0.07 1.07 7.83 -51.93 -0.41 0.66 16 40 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.10 1.04 8.08 -51.93 -0.42 0.63 16 42 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -32.31 362.42 -9.14 -41.45 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.39 Total: -0.39 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.59 Total: -10.46 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.31 Total: -39.26 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.31 -9.14 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115368907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.379 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds