Wall clock time and date at job start Mon Mar 30 2020 00:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47281 * 2 1 4 4 C 1.53002 * 109.46889 * 240.00308 * 2 1 3 5 5 C 1.53000 * 109.47374 * 120.00419 * 2 1 3 6 6 H 1.08997 * 108.87500 * 178.60299 * 5 2 1 7 7 C 1.45542 * 108.89048 * 297.11010 * 5 2 1 8 8 C 1.54240 * 112.40492 * 182.69155 * 7 5 2 9 9 C 1.50481 * 108.51863 * 280.01280 * 8 7 5 10 10 C 1.54063 * 112.49324 * 94.15228 * 9 8 7 11 11 H 1.09005 * 108.72513 * 79.08351 * 10 9 8 12 12 N 1.46496 * 108.81362 * 197.41957 * 10 9 8 13 13 C 1.34781 * 119.99970 * 278.29428 * 12 10 9 14 14 O 1.21683 * 119.99847 * 359.97438 * 13 12 10 15 15 C 1.46370 * 120.00033 * 180.02562 * 13 12 10 16 16 H 1.08003 * 119.99974 * 5.99810 * 15 13 12 17 17 C 1.40052 * 120.00265 * 186.00354 * 15 13 12 18 18 N 1.30670 * 119.99365 * 353.48697 * 17 15 13 19 19 Si 1.86795 * 120.00237 * 173.76752 * 17 15 13 20 20 H 1.48502 * 109.47353 * 94.97906 * 19 17 15 21 21 H 1.48505 * 109.47172 * 214.97963 * 19 17 15 22 22 H 1.48496 * 109.47184 * 334.97936 * 19 17 15 23 23 C 1.54059 * 112.81892 * 318.27871 * 10 9 8 24 24 C 1.50469 * 112.49978 * 318.28393 * 23 10 9 25 25 H 1.08997 * 109.47021 * 299.99542 * 1 2 3 26 26 H 1.09003 * 109.47161 * 60.00085 * 1 2 3 27 27 H 1.09002 * 109.47116 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47777 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47170 * 300.00493 * 3 2 1 30 30 H 1.09004 * 109.46880 * 59.99923 * 3 2 1 31 31 H 1.09002 * 109.47266 * 299.99938 * 4 2 1 32 32 H 1.09003 * 109.47540 * 59.99839 * 4 2 1 33 33 H 1.09001 * 109.47205 * 179.97438 * 4 2 1 34 34 H 1.09001 * 108.89845 * 303.44640 * 7 5 2 35 35 H 1.09002 * 108.89407 * 62.03345 * 7 5 2 36 36 H 1.08993 * 109.63044 * 39.72117 * 8 7 5 37 37 H 1.09006 * 109.62965 * 160.11344 * 8 7 5 38 38 H 1.09004 * 108.87816 * 333.37098 * 9 8 7 39 39 H 1.09000 * 108.87257 * 214.92591 * 9 8 7 40 40 H 0.96998 * 120.00359 * 98.29114 * 12 10 9 41 41 H 0.97005 * 119.99817 * 180.02562 * 18 17 15 42 42 H 1.09010 * 108.87667 * 79.06392 * 23 10 9 43 43 H 1.09000 * 108.87884 * 197.50071 * 23 10 9 44 44 H 1.09003 * 109.62619 * 213.85880 * 24 23 10 45 45 H 1.08996 * 109.62893 * 334.44307 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.1297 -0.7375 1.2268 7 6 1.6056 0.0134 2.4280 8 6 2.1336 -0.6093 3.7366 9 6 1.2645 -1.7855 4.0910 10 6 1.8317 -3.1175 3.5641 11 1 2.6292 -3.4462 4.2305 12 7 0.7652 -4.1218 3.5735 13 6 0.4602 -4.7702 4.7150 14 8 1.0710 -4.5218 5.7377 15 6 -0.6050 -5.7741 4.7243 16 1 -1.0805 -6.0654 3.7994 17 6 -1.0076 -6.3568 5.9325 18 7 -0.3499 -6.1010 7.0323 19 14 -2.4800 -7.5056 5.9705 20 1 -2.0143 -8.9111 5.8568 21 1 -3.2129 -7.3290 7.2500 22 1 -3.3834 -7.1901 4.8350 23 6 2.3941 -3.0035 2.1344 24 6 1.5186 -2.1728 1.2357 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2494 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.9639 1.0403 2.3560 35 1 0.5160 0.0215 2.4571 36 1 3.1614 -0.9432 3.5945 37 1 2.0963 0.1312 4.5356 38 1 0.2726 -1.6318 3.6660 39 1 1.1761 -1.8443 5.1758 40 1 0.2785 -4.3201 2.7582 41 1 -0.6285 -6.5048 7.8691 42 1 3.3842 -2.5495 2.1800 43 1 2.4862 -4.0036 1.7108 44 1 1.5581 -2.5667 0.2201 45 1 0.4920 -2.1965 1.6010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187326015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:09 Heat of formation + Delta-G solvation = -95.125927 kcal Electronic energy + Delta-G solvation = -21700.884674 eV Core-core repulsion = 18715.889119 eV Total energy + Delta-G solvation = -2984.995555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17699 -39.32873 -37.05864 -34.74214 -34.16968 -32.65144 -30.93976 -28.54888 -28.13708 -27.94601 -25.28615 -25.02302 -22.27089 -21.62689 -20.21616 -19.22305 -19.08558 -17.49945 -16.94695 -16.37333 -16.00456 -15.71051 -15.11910 -15.02499 -14.87098 -14.45264 -14.29840 -14.20722 -13.88848 -13.64540 -13.16086 -12.99721 -12.87788 -12.77648 -12.62139 -12.58506 -12.45813 -12.37250 -12.11797 -11.99430 -11.95956 -11.66868 -11.40414 -11.27262 -11.03213 -10.92172 -10.81726 -10.65433 -9.80764 -9.37182 -8.28669 -6.83689 1.38850 1.40376 1.56301 2.24780 2.49240 3.17825 3.60857 3.70623 3.78527 3.90146 4.07110 4.14550 4.16601 4.33243 4.38287 4.49048 4.60317 4.65695 4.70958 4.79755 4.87262 4.91007 4.99475 5.03755 5.05648 5.17138 5.17651 5.18937 5.21012 5.29847 5.31176 5.32488 5.39687 5.40728 5.42826 5.51226 5.56138 5.58935 5.74822 5.76282 5.91367 6.27678 6.39248 6.88013 7.61188 8.52908 8.70160 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.004286 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.890929 B = 6531.690657 C = 6872.252661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.068 4.068 6 H 0.071 0.929 7 C -0.110 4.110 8 C -0.107 4.107 9 C -0.112 4.112 10 C 0.158 3.842 11 H 0.027 0.973 12 N -0.750 5.750 13 C 0.539 3.461 14 O -0.632 6.632 15 C -0.577 4.577 16 H 0.085 0.915 17 C 0.029 3.971 18 N -0.823 5.823 19 Si 0.996 3.004 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.248 1.248 23 C -0.110 4.110 24 C -0.109 4.109 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.013 0.987 40 H 0.392 0.608 41 H 0.273 0.727 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 12.497 -16.986 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.200 4.200 5 C -0.086 4.086 6 H 0.089 0.911 7 C -0.147 4.147 8 C -0.145 4.145 9 C -0.152 4.152 10 C 0.053 3.947 11 H 0.045 0.955 12 N -0.403 5.403 13 C 0.342 3.658 14 O -0.520 6.520 15 C -0.614 4.614 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.453 5.453 19 Si 0.816 3.184 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.172 1.172 23 C -0.148 4.148 24 C -0.147 4.147 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.225 0.775 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.949 12.666 -16.083 20.683 hybrid contribution -0.722 -0.779 0.471 1.162 sum 2.226 11.888 -15.612 19.748 Atomic orbital electron populations 1.21964 0.95059 1.01717 1.01531 1.20576 0.95380 0.95587 0.94728 1.21953 1.01089 0.95111 1.01890 1.21950 1.01057 1.00388 0.96597 1.20067 1.00320 0.93977 0.94262 0.91079 1.20653 1.00890 0.99932 0.93258 1.21265 0.99255 0.95812 0.98194 1.21597 0.99856 0.95312 0.98398 1.21107 0.89217 0.87629 0.96794 0.95514 1.45956 1.39699 1.42859 1.11820 1.18583 0.83582 0.81694 0.81909 1.90540 1.56292 1.70543 1.34609 1.21449 1.20469 1.24019 0.95458 0.89677 1.26964 1.00079 0.97314 0.94211 1.70204 1.37418 1.37305 1.00353 0.85033 0.76811 0.77659 0.78942 1.18670 1.19785 1.17166 1.21520 1.00068 1.00880 0.92297 1.21500 0.98900 0.94827 0.99430 0.92991 0.92346 0.92989 0.92414 0.92350 0.92354 0.92342 0.92384 0.92459 0.90387 0.92561 0.91455 0.92043 0.92668 0.96789 0.77505 0.91689 0.90206 0.92071 0.89861 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 7.84 71.98 0.56 -1.95 16 2 C -0.06 -1.01 0.56 -52.18 -0.03 -1.04 16 3 C -0.14 -2.04 7.98 71.98 0.57 -1.46 16 4 C -0.14 -2.09 8.19 71.98 0.59 -1.50 16 5 C -0.07 -1.32 1.11 -12.65 -0.01 -1.33 16 6 H 0.07 1.34 7.47 -2.39 -0.02 1.32 16 7 C -0.11 -2.38 3.98 28.74 0.11 -2.27 16 8 C -0.11 -2.96 5.61 30.20 0.17 -2.79 16 9 C -0.11 -4.22 4.82 30.14 0.15 -4.07 16 10 C 0.16 6.26 2.45 45.71 0.11 6.37 16 11 H 0.03 1.26 7.59 -2.38 -0.02 1.25 16 12 N -0.75 -34.63 5.03 -443.42 -2.23 -36.86 16 13 C 0.54 32.14 7.65 86.36 0.66 32.80 16 14 O -0.63 -43.60 14.72 -4.29 -0.06 -43.67 16 15 C -0.58 -33.60 9.53 24.83 0.24 -33.36 16 16 H 0.09 4.45 7.86 -2.91 -0.02 4.43 16 17 C 0.03 1.66 5.49 85.31 0.47 2.13 16 18 N -0.82 -51.68 11.86 21.84 0.26 -51.42 16 19 Si 1.00 41.85 29.56 68.60 2.03 43.88 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.11 -3.08 4.76 30.13 0.14 -2.94 16 24 C -0.11 -2.49 3.87 30.20 0.12 -2.38 16 25 H 0.05 0.95 6.49 -2.39 -0.02 0.94 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.97 6.90 -2.39 -0.02 0.95 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.84 6.27 -2.38 -0.01 0.83 16 31 H 0.06 0.89 6.01 -2.39 -0.01 0.88 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.42 5.92 -2.39 -0.01 1.41 16 35 H 0.06 1.31 5.68 -2.39 -0.01 1.30 16 36 H 0.07 1.78 6.97 -2.39 -0.02 1.76 16 37 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.05 2.05 6.61 -2.39 -0.02 2.04 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.39 15.76 8.56 -92.71 -0.79 14.96 16 41 H 0.27 15.52 8.29 -92.70 -0.77 14.75 16 42 H 0.08 1.99 6.63 -2.38 -0.02 1.98 16 43 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 44 H 0.08 1.64 5.62 -2.39 -0.01 1.62 16 45 H 0.05 1.44 6.46 -2.39 -0.02 1.43 16 Total: -1.00 -75.34 330.77 4.02 -71.32 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.18 Total: 30.53 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 3.85 Total: -13.78 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -1.97 Total: -88.28 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -0.06 Total: -43.67 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -75.34 4.02 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187326015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.804 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds