Wall clock time and date at job start Mon Mar 30 2020 00:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.50696 * 109.47490 * 300.00187 * 4 2 1 6 6 H 1.08003 * 119.99760 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00824 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00681 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99593 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47242 * 90.00418 * 9 7 5 11 11 H 1.48504 * 109.47292 * 210.00148 * 9 7 5 12 12 H 1.48503 * 109.47307 * 330.00218 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 14 14 N 1.46899 * 109.47163 * 59.99810 * 13 2 1 15 15 C 1.46896 * 110.99916 * 180.02562 * 14 13 2 16 16 H 1.08997 * 113.17908 * 28.08881 * 15 14 13 17 17 C 1.55628 * 114.05934 * 255.49581 * 15 14 13 18 18 C 1.50007 * 84.25270 * 282.34456 * 17 15 14 19 19 H 1.09004 * 111.98756 * 75.81485 * 18 17 15 20 20 O 1.40857 * 127.42222 * 219.54327 * 18 17 15 21 21 C 1.43692 * 110.22286 * 163.14913 * 20 18 17 22 22 C 1.52404 * 112.33170 * 302.28227 * 21 20 18 23 23 C 1.54395 * 112.06220 * 50.34936 * 22 21 20 24 24 C 1.50564 * 114.06210 * 160.91801 * 15 14 13 25 25 H 1.09008 * 113.16766 * 191.89350 * 24 15 14 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 34 34 H 0.96998 * 120.00084 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47050 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 13 2 1 37 37 H 1.00897 * 110.99811 * 56.04725 * 14 13 2 38 38 H 1.08995 * 114.06658 * 36.16881 * 17 15 14 39 39 H 1.08999 * 114.06406 * 168.52321 * 17 15 14 40 40 H 1.09003 * 108.83617 * 181.74694 * 21 20 18 41 41 H 1.09000 * 109.25925 * 63.11773 * 21 20 18 42 42 H 1.09003 * 108.96426 * 289.68591 * 22 21 20 43 43 H 1.08991 * 108.95993 * 171.01210 * 22 21 20 44 44 H 1.08999 * 110.30478 * 187.27908 * 23 22 21 45 45 H 1.08999 * 110.44462 * 65.13292 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.5378 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8704 -0.4823 3.7319 8 7 1.4317 0.1373 4.8058 9 14 2.9433 -2.0018 3.9032 10 1 4.3713 -1.5970 3.9488 11 1 2.5915 -2.7175 5.1560 12 1 2.7200 -2.8991 2.7412 13 6 2.0400 -0.7212 -1.2494 14 7 1.5503 -0.0286 -2.4487 15 6 2.0208 -0.6950 -3.6704 16 1 2.1973 -1.7622 -3.5362 17 6 3.1768 0.0528 -4.3960 18 6 2.0833 0.9555 -4.8855 19 1 1.7409 1.6400 -4.1093 20 8 1.9515 1.5226 -6.1681 21 6 0.6079 1.9912 -6.3683 22 6 -0.4236 0.8826 -6.1964 23 6 -0.2240 0.1040 -4.8782 24 6 1.2267 -0.3505 -4.9023 25 1 1.4485 -0.9982 -5.7505 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 -1.7489 1.2491 33 1 3.1300 -0.7216 1.2489 34 1 1.6654 -0.1946 5.6867 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2494 37 1 1.8197 0.9437 -2.4401 38 1 3.8846 0.5366 -3.7230 39 1 3.6581 -0.5290 -5.1820 40 1 0.5231 2.3965 -7.3766 41 1 0.3935 2.7847 -5.6524 42 1 -0.3412 0.1891 -7.0333 43 1 -1.4207 1.3229 -6.2002 44 1 -0.8900 -0.7582 -4.8436 45 1 -0.4027 0.7537 -4.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190337030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:44 Heat of formation + Delta-G solvation = -14.473455 kcal Electronic energy + Delta-G solvation = -21505.278008 eV Core-core repulsion = 18523.779807 eV Total energy + Delta-G solvation = -2981.498201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28363 -37.81859 -36.40029 -33.36692 -32.77934 -31.48155 -27.75651 -27.48834 -26.40401 -25.46527 -24.48364 -22.97253 -22.04911 -21.21802 -19.42124 -17.96486 -16.91387 -16.66903 -15.96783 -15.30602 -15.18533 -14.65835 -14.21315 -14.04647 -13.91909 -13.44611 -13.15255 -12.99112 -12.60202 -12.36017 -12.26228 -12.16573 -11.95025 -11.85918 -11.13413 -11.11901 -11.04380 -10.91457 -10.87409 -10.59728 -10.50104 -10.31731 -10.25615 -9.82986 -9.68463 -9.33669 -8.99493 -8.90115 -8.50117 -8.22010 -6.00400 -3.96714 3.31714 3.37460 3.39740 3.43032 4.13651 4.29994 4.47918 4.50525 4.71629 4.74411 4.84165 5.02230 5.08600 5.31830 5.32828 5.40549 5.46852 5.52197 5.62887 5.64588 5.65513 5.74435 5.77431 5.85325 5.91238 5.96507 6.12828 6.14492 6.23915 6.34580 6.39221 6.56234 6.67181 6.78157 7.01542 7.05784 7.11728 7.16839 7.25836 7.31142 7.44192 7.54872 7.84803 8.59131 9.05331 9.62711 11.12699 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.003982 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.004762 B = 7030.301554 C = 7233.117238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.661 5.661 15 C 0.083 3.917 16 H 0.091 0.909 17 C -0.144 4.144 18 C 0.042 3.958 19 H 0.081 0.919 20 O -0.367 6.367 21 C 0.064 3.936 22 C -0.155 4.155 23 C -0.098 4.098 24 C -0.149 4.149 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.015 0.985 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.026 0.974 36 H 0.068 0.932 37 H 0.341 0.659 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 0.526 -21.514 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.050 4.050 3 C -0.189 4.189 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.061 4.061 14 N -0.293 5.293 15 C -0.029 4.029 16 H 0.109 0.891 17 C -0.184 4.184 18 C -0.016 4.016 19 H 0.099 0.901 20 O -0.286 6.286 21 C -0.013 4.013 22 C -0.192 4.192 23 C -0.135 4.135 24 C -0.169 4.169 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.990 0.231 -21.452 21.477 hybrid contribution 1.364 -0.563 0.347 1.516 sum 0.374 -0.333 -21.105 21.111 Atomic orbital electron populations 1.21612 0.94492 1.00716 1.00657 1.20429 0.96235 0.94987 0.93305 1.21793 0.99668 0.96505 1.00895 1.19620 0.95447 0.95838 0.93267 1.21132 1.31549 1.13156 0.88698 0.90449 1.25014 0.95844 0.96684 0.96023 1.69907 1.46159 1.40620 0.97833 0.86851 0.81105 0.84188 0.77527 1.20517 1.21556 1.19122 1.22198 0.96549 0.98165 0.89217 1.60524 1.62147 1.06241 1.00374 1.22190 0.92538 0.98435 0.89709 0.89090 1.23496 0.96828 0.97779 1.00292 1.23331 0.99148 0.93096 0.86037 0.90134 1.87784 1.28649 1.79757 1.32435 1.22440 0.81803 0.95441 1.01613 1.22182 0.99210 0.98758 0.99089 1.21388 0.95669 0.99745 0.96709 1.23350 0.96187 0.98993 0.98339 0.88742 0.92125 0.94156 0.93760 0.91076 0.94065 0.94793 0.96683 0.97380 0.92886 0.95567 0.91337 0.83759 0.90856 0.88860 0.89292 0.93230 0.91785 0.91025 0.91816 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.06 37.16 0.30 -1.89 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.13 -2.35 7.89 37.16 0.29 -2.05 16 4 C 0.00 -0.09 3.11 -27.89 -0.09 -0.18 16 5 C -0.51 -13.86 8.20 -34.44 -0.28 -14.14 16 6 H 0.08 2.26 5.92 -52.48 -0.31 1.95 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.07 1.05 4.53 -3.82 -0.02 1.03 16 14 N -0.66 -8.63 5.12 -110.45 -0.56 -9.19 16 15 C 0.08 0.94 4.39 -71.19 -0.31 0.63 16 16 H 0.09 1.03 7.92 -51.93 -0.41 0.62 16 17 C -0.14 -1.53 7.66 -29.92 -0.23 -1.76 16 18 C 0.04 0.47 3.85 -30.16 -0.12 0.36 16 19 H 0.08 0.94 6.21 -51.93 -0.32 0.62 16 20 O -0.37 -4.43 10.92 -34.62 -0.38 -4.81 16 21 C 0.06 0.60 6.67 36.85 0.25 0.84 16 22 C -0.15 -1.36 5.95 -26.30 -0.16 -1.52 16 23 C -0.10 -1.01 6.00 -26.49 -0.16 -1.17 16 24 C -0.15 -1.60 3.33 -93.71 -0.31 -1.91 16 25 H 0.09 1.00 8.13 -51.92 -0.42 0.58 16 26 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 29 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 32 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 33 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 37 H 0.34 4.38 4.89 -39.29 -0.19 4.18 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -29.29 334.73 -8.88 -38.17 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.07 Total: 1.69 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -1.02 Total: -21.01 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.21 Total: -36.05 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.38 Total: -4.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.29 -8.88 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190337030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.698 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds