Wall clock time and date at job start Mon Mar 30 2020 00:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 C 1.50696 * 109.47490 * 300.00187 * 4 2 1 6 6 H 1.08003 * 119.99760 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00824 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00681 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99593 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47242 * 90.00418 * 9 7 5 11 11 H 1.48504 * 109.47292 * 210.00148 * 9 7 5 12 12 H 1.48503 * 109.47307 * 330.00218 * 9 7 5 13 13 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 14 14 N 1.46899 * 109.47163 * 59.99810 * 13 2 1 15 15 C 1.46896 * 110.99916 * 180.02562 * 14 13 2 16 16 H 1.08997 * 113.17908 * 28.08881 * 15 14 13 17 17 C 1.55628 * 114.05934 * 255.49581 * 15 14 13 18 18 C 1.50007 * 84.25270 * 282.34456 * 17 15 14 19 19 H 1.09004 * 111.98756 * 75.81485 * 18 17 15 20 20 O 1.40857 * 127.42222 * 219.54327 * 18 17 15 21 21 C 1.43692 * 110.22286 * 163.14913 * 20 18 17 22 22 C 1.52404 * 112.33170 * 302.28227 * 21 20 18 23 23 C 1.54395 * 112.06220 * 50.34936 * 22 21 20 24 24 C 1.50564 * 114.06210 * 160.91801 * 15 14 13 25 25 H 1.09008 * 113.16766 * 191.89350 * 24 15 14 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 34 34 H 0.96998 * 120.00084 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47050 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 13 2 1 37 37 H 1.00897 * 110.99811 * 56.04725 * 14 13 2 38 38 H 1.08995 * 114.06658 * 36.16881 * 17 15 14 39 39 H 1.08999 * 114.06406 * 168.52321 * 17 15 14 40 40 H 1.09003 * 108.83617 * 181.74694 * 21 20 18 41 41 H 1.09000 * 109.25925 * 63.11773 * 21 20 18 42 42 H 1.09003 * 108.96426 * 289.68591 * 22 21 20 43 43 H 1.08991 * 108.95993 * 171.01210 * 22 21 20 44 44 H 1.08999 * 110.30478 * 187.27908 * 23 22 21 45 45 H 1.08999 * 110.44462 * 65.13292 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.5378 -0.0110 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8704 -0.4823 3.7319 8 7 1.4317 0.1373 4.8058 9 14 2.9433 -2.0018 3.9032 10 1 4.3713 -1.5970 3.9488 11 1 2.5915 -2.7175 5.1560 12 1 2.7200 -2.8991 2.7412 13 6 2.0400 -0.7212 -1.2494 14 7 1.5503 -0.0286 -2.4487 15 6 2.0208 -0.6950 -3.6704 16 1 2.1973 -1.7622 -3.5362 17 6 3.1768 0.0528 -4.3960 18 6 2.0833 0.9555 -4.8855 19 1 1.7409 1.6400 -4.1093 20 8 1.9515 1.5226 -6.1681 21 6 0.6079 1.9912 -6.3683 22 6 -0.4236 0.8826 -6.1964 23 6 -0.2240 0.1040 -4.8782 24 6 1.2267 -0.3505 -4.9023 25 1 1.4485 -0.9982 -5.7505 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6768 -1.7489 1.2491 33 1 3.1300 -0.7216 1.2489 34 1 1.6654 -0.1946 5.6867 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2494 37 1 1.8197 0.9437 -2.4401 38 1 3.8846 0.5366 -3.7230 39 1 3.6581 -0.5290 -5.1820 40 1 0.5231 2.3965 -7.3766 41 1 0.3935 2.7847 -5.6524 42 1 -0.3412 0.1891 -7.0333 43 1 -1.4207 1.3229 -6.2002 44 1 -0.8900 -0.7582 -4.8436 45 1 -0.4027 0.7537 -4.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190337030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:43 Heat of formation + Delta-G solvation = -32.008078 kcal Electronic energy + Delta-G solvation = -21506.038366 eV Core-core repulsion = 18523.779807 eV Total energy + Delta-G solvation = -2982.258560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13678 -39.10781 -37.49310 -34.71023 -34.10419 -32.92055 -29.54876 -28.36181 -27.91792 -26.74335 -25.50472 -23.86071 -23.77176 -21.98451 -20.32069 -19.49459 -18.85985 -17.68477 -16.80961 -16.38915 -16.26501 -15.99711 -15.70610 -15.19022 -15.15345 -14.73106 -14.40623 -14.30584 -13.95971 -13.81686 -13.48383 -13.13590 -12.98216 -12.86720 -12.75949 -12.68231 -12.43025 -12.21438 -12.09731 -11.87874 -11.83105 -11.66786 -11.38675 -11.34471 -11.07526 -10.96478 -10.78003 -10.68965 -9.82032 -9.26572 -8.20806 -6.21109 1.36474 1.38662 1.49476 2.40405 2.59520 3.14460 3.15141 3.41047 3.66827 3.89721 3.99207 4.08999 4.14037 4.21729 4.29888 4.31396 4.33498 4.52703 4.61251 4.72426 4.74788 4.80457 4.83301 4.89604 4.93395 4.96687 5.03884 5.05734 5.09100 5.16560 5.17407 5.19246 5.34904 5.38506 5.45904 5.53252 5.54326 5.63846 5.77078 5.83014 6.13387 6.23552 6.42475 6.47860 6.86488 7.41515 8.95461 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037474 B = 0.003982 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.004762 B = 7030.301554 C = 7233.117238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.048 4.048 3 C -0.125 4.125 4 C -0.003 4.003 5 C -0.503 4.503 6 H 0.044 0.956 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.248 1.248 13 C 0.081 3.919 14 N -0.660 5.660 15 C 0.081 3.919 16 H 0.096 0.904 17 C -0.138 4.138 18 C 0.038 3.962 19 H 0.075 0.925 20 O -0.386 6.386 21 C 0.057 3.943 22 C -0.149 4.149 23 C -0.099 4.099 24 C -0.143 4.143 25 H 0.099 0.901 26 H 0.026 0.974 27 H 0.038 0.962 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.014 0.986 33 H 0.012 0.988 34 H 0.262 0.738 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.343 0.657 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -0.579 -23.964 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.041 4.041 5 C -0.542 4.542 6 H 0.062 0.938 7 C -0.195 4.195 8 N -0.598 5.598 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.172 1.172 13 C -0.048 4.048 14 N -0.292 5.292 15 C -0.031 4.031 16 H 0.114 0.886 17 C -0.177 4.177 18 C -0.020 4.020 19 H 0.093 0.907 20 O -0.305 6.305 21 C -0.019 4.019 22 C -0.187 4.187 23 C -0.136 4.136 24 C -0.163 4.163 25 H 0.117 0.883 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.213 -0.872 -23.935 23.951 hybrid contribution 1.048 -0.125 1.062 1.497 sum 0.835 -0.997 -22.872 22.909 Atomic orbital electron populations 1.21509 0.94668 1.00386 1.00023 1.20354 0.96043 0.95291 0.93201 1.21705 0.99887 0.96018 1.00635 1.19589 0.95485 0.95598 0.93389 1.21439 1.30112 1.12061 0.90541 0.93830 1.25923 0.97651 1.00159 0.95764 1.70066 1.48392 1.42842 0.98451 0.85801 0.79309 0.80409 0.77950 1.19613 1.21591 1.17169 1.21917 0.96694 0.97733 0.88500 1.60442 1.62294 1.06278 1.00187 1.22190 0.93277 0.98545 0.89038 0.88635 1.23469 0.96474 0.97482 1.00306 1.23359 0.99635 0.93213 0.85804 0.90707 1.87761 1.30129 1.79964 1.32652 1.22626 0.80917 0.95663 1.02667 1.22142 0.99747 0.98547 0.98263 1.21383 0.95433 0.99690 0.97120 1.23322 0.96323 0.98664 0.97952 0.88287 0.95479 0.94289 0.91541 0.94538 0.93584 0.91832 0.96800 0.96967 0.92933 0.94994 0.91274 0.83531 0.90869 0.87863 0.87673 0.93111 0.91402 0.89667 0.91851 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16 2 C -0.05 -1.76 0.60 -52.18 -0.03 -1.79 16 3 C -0.13 -4.38 7.89 71.98 0.57 -3.81 16 4 C 0.00 -0.12 3.11 29.84 0.09 -0.03 16 5 C -0.50 -28.09 8.20 25.60 0.21 -27.88 16 6 H 0.04 2.67 5.92 -2.91 -0.02 2.65 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.96 -60.07 13.96 21.45 0.30 -59.77 16 9 Si 0.94 44.46 27.47 68.60 1.88 46.34 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.25 -10.89 6.54 99.48 0.65 -10.23 16 13 C 0.08 2.30 4.53 86.31 0.39 2.70 16 14 N -0.66 -15.58 5.12 -503.36 -2.57 -18.15 16 15 C 0.08 1.61 4.39 42.67 0.19 1.80 16 16 H 0.10 1.87 7.92 -2.39 -0.02 1.85 16 17 C -0.14 -2.57 7.66 28.53 0.22 -2.35 16 18 C 0.04 0.77 3.85 28.37 0.11 0.88 16 19 H 0.08 1.59 6.21 -2.38 -0.01 1.58 16 20 O -0.39 -8.50 10.92 -146.80 -1.60 -10.10 16 21 C 0.06 0.95 6.67 71.78 0.48 1.43 16 22 C -0.15 -2.26 5.95 30.87 0.18 -2.08 16 23 C -0.10 -1.82 6.00 30.75 0.18 -1.64 16 24 C -0.14 -2.72 3.33 -12.80 -0.04 -2.76 16 25 H 0.10 1.83 8.13 -2.38 -0.02 1.81 16 26 H 0.03 1.15 6.62 -2.39 -0.02 1.13 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 2.12 7.60 -2.38 -0.02 2.11 16 29 H 0.04 1.51 6.62 -2.39 -0.02 1.50 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.82 6.57 -2.39 -0.02 1.80 16 32 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 33 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 34 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 37 H 0.34 7.93 4.89 -89.70 -0.44 7.49 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.39 7.70 -2.39 -0.02 1.37 16 Total: -1.00 -63.70 334.73 2.05 -61.65 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.45 Total: 18.49 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 3.59 Total: -38.46 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.28 Total: -77.92 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.60 Total: -10.10 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -63.70 2.05 -61.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190337030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.640 kcal (2) G-P(sol) polarization free energy of solvation -63.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds