Wall clock time and date at job start Mon Mar 30 2020 00:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.52997 * 109.47060 * 65.00157 * 4 2 1 6 6 H 1.09008 * 115.55245 * 29.41643 * 5 4 2 7 7 C 1.52998 * 117.50310 * 243.74949 * 5 4 2 8 8 C 1.52996 * 117.50163 * 175.08923 * 5 4 2 9 9 H 1.09005 * 117.49813 * 359.97438 * 8 5 4 10 10 C 1.50704 * 117.50029 * 214.97809 * 8 5 4 11 11 O 1.21277 * 119.99975 * 0.02562 * 10 8 5 12 12 N 1.34772 * 119.99968 * 179.97438 * 10 8 5 13 13 C 1.46504 * 119.99954 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47086 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.46874 * 299.99932 * 14 13 12 16 16 C 1.52997 * 109.47320 * 59.99902 * 14 13 12 17 17 C 1.50699 * 109.46973 * 180.02562 * 14 13 12 18 18 H 1.08002 * 120.00245 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99890 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99865 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99982 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47086 * 59.99547 * 21 19 17 23 23 H 1.48501 * 109.47213 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47118 * 299.99826 * 21 19 17 25 25 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 27 27 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 28 28 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 29 29 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 31 31 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 32 32 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 33 33 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 34 34 H 1.09000 * 117.49561 * 359.97438 * 7 5 4 35 35 H 1.09000 * 117.50593 * 145.01245 * 7 5 4 36 36 H 0.97002 * 120.00310 * 0.02562 * 12 10 8 37 37 H 1.08997 * 109.47168 * 299.99939 * 13 12 10 38 38 H 1.08998 * 109.47198 * 60.00347 * 13 12 10 39 39 H 1.08998 * 109.47217 * 59.99808 * 15 14 13 40 40 H 1.08995 * 109.46950 * 180.02562 * 15 14 13 41 41 H 1.08998 * 109.47224 * 299.99934 * 15 14 13 42 42 H 1.09000 * 109.46706 * 59.99778 * 16 14 13 43 43 H 1.08995 * 109.47272 * 180.02562 * 16 14 13 44 44 H 1.09004 * 109.47085 * 299.99911 * 16 14 13 45 45 H 0.96999 * 119.99818 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 1 1.5406 -2.6158 0.1867 7 6 0.6768 -2.7102 2.2637 8 6 2.1522 -3.1165 2.2949 9 1 2.7810 -2.6723 3.0665 10 6 2.4911 -4.5356 1.9175 11 8 2.3508 -4.9085 0.7720 12 7 2.9510 -5.3901 2.8527 13 6 3.2810 -6.7695 2.4858 14 6 3.7762 -7.5218 3.7227 15 6 5.0233 -6.8289 4.2757 16 6 2.6798 -7.5263 4.7898 17 6 4.1162 -8.9405 3.3451 18 1 3.9912 -9.2726 2.3250 19 6 4.5859 -9.8149 4.3021 20 7 4.7376 -9.4107 5.5443 21 14 5.0067 -11.5737 3.8342 22 1 6.0712 -11.5693 2.7987 23 1 5.4874 -12.3039 5.0346 24 1 3.7964 -12.2461 3.2969 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1263 -0.6442 1.2952 33 1 1.6053 -0.2617 2.1370 34 1 0.3348 -1.9987 3.0153 35 1 -0.0483 -3.4694 1.9703 36 1 3.0636 -5.0918 3.7689 37 1 2.3925 -7.2632 2.0922 38 1 4.0619 -6.7663 1.7253 39 1 4.7778 -5.8026 4.5487 40 1 5.3763 -7.3650 5.1566 41 1 5.8044 -6.8257 3.5155 42 1 1.7914 -8.0199 4.3958 43 1 3.0327 -8.0618 5.6711 44 1 2.4343 -6.4999 5.0628 45 1 5.0684 -10.0258 6.2175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315611809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:38 Heat of formation + Delta-G solvation = -48.600561 kcal Electronic energy + Delta-G solvation = -20544.260137 eV Core-core repulsion = 17561.282073 eV Total energy + Delta-G solvation = -2982.978064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72058 -37.72544 -36.29155 -34.91425 -33.22186 -30.84422 -27.84065 -27.33617 -25.90913 -25.72017 -25.16265 -23.05061 -21.21906 -20.15863 -19.67015 -18.73297 -17.12256 -15.81481 -15.47912 -15.11844 -14.90895 -14.67644 -14.28748 -14.11512 -13.60060 -13.26088 -12.92953 -12.73160 -12.58065 -12.32993 -12.17092 -12.00423 -11.63078 -11.39019 -11.30038 -11.17658 -11.05925 -10.84513 -10.81369 -10.72915 -10.38399 -10.20960 -10.17288 -9.98036 -9.62613 -9.52338 -9.19087 -8.78704 -8.43568 -8.28515 -6.01694 -4.11855 2.89287 3.30326 3.34515 3.37927 3.66161 3.95488 4.39859 4.53779 4.68726 4.75466 4.90956 4.96642 5.09195 5.24899 5.34392 5.38072 5.45887 5.52079 5.53394 5.63377 5.69695 5.73028 5.86940 5.96247 6.01562 6.12290 6.17258 6.26076 6.32850 6.34207 6.52088 6.79367 6.83512 6.95131 7.02598 7.06823 7.36373 7.56275 7.69676 8.01492 8.09076 8.18193 8.39261 8.75828 8.89016 9.53868 10.99713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.048295 B = 0.003128 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.634146 B = 8949.825766 C = 9036.337454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.085 4.085 5 C -0.117 4.117 6 H 0.116 0.884 7 C -0.150 4.150 8 C -0.188 4.188 9 H 0.119 0.881 10 C 0.532 3.468 11 O -0.555 6.555 12 N -0.713 5.713 13 C 0.132 3.868 14 C 0.057 3.943 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.398 0.602 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.006 0.994 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 17.973 -4.236 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.135 4.135 6 H 0.134 0.866 7 C -0.187 4.187 8 C -0.210 4.210 9 H 0.137 0.863 10 C 0.318 3.682 11 O -0.434 6.434 12 N -0.362 5.362 13 C 0.009 3.991 14 C 0.056 3.944 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.233 0.767 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.125 17.593 -4.856 19.251 hybrid contribution 0.376 -0.928 0.340 1.057 sum -5.749 16.665 -4.516 18.198 Atomic orbital electron populations 1.21845 0.95155 1.02143 1.01243 1.21109 0.96068 0.95826 0.98367 1.21848 1.00960 0.96107 1.01587 1.21283 1.00836 0.92119 0.97993 1.22376 1.01721 0.93808 0.95613 0.86582 1.23069 0.90868 1.03097 1.01702 1.22368 0.99611 0.94601 1.04391 0.86299 1.19608 0.77262 0.85968 0.85381 1.90647 1.54424 1.78446 1.19927 1.46246 1.65029 1.12969 1.11979 1.21717 0.99071 0.78767 0.99532 1.18344 0.92315 0.94021 0.89728 1.21832 0.98598 0.95928 1.02511 1.21831 0.97718 0.96920 1.02399 1.20959 1.43681 0.94502 0.95400 0.92511 1.24880 0.95200 0.98494 0.94924 1.69795 1.46162 1.35195 1.01352 0.86629 0.78845 0.84566 0.77794 1.20279 1.21314 1.20278 0.92150 0.92900 0.93138 0.91024 0.92726 0.92806 0.92805 0.91425 0.91678 0.88148 0.88453 0.76664 0.92829 0.92787 0.97486 0.89585 0.95458 0.95468 0.89590 0.97455 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.01 37.15 0.33 -0.83 16 2 C -0.10 -0.80 2.88 -90.62 -0.26 -1.06 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.72 16 4 C -0.08 -0.78 4.96 -26.73 -0.13 -0.91 16 5 C -0.12 -1.35 4.23 -90.62 -0.38 -1.73 16 6 H 0.12 1.57 7.60 -51.92 -0.39 1.18 16 7 C -0.15 -1.66 9.88 -26.70 -0.26 -1.93 16 8 C -0.19 -2.47 5.91 -91.74 -0.54 -3.01 16 9 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 10 C 0.53 9.48 7.61 -10.99 -0.08 9.40 16 11 O -0.56 -11.91 16.26 5.56 0.09 -11.82 16 12 N -0.71 -13.04 4.96 -60.29 -0.30 -13.33 16 13 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 14 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 15 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 16 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 17 C -0.51 -13.42 8.01 -34.44 -0.28 -13.69 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 20 N -0.89 -23.75 9.35 55.43 0.52 -23.23 16 21 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.53 7.38 -51.93 -0.38 0.14 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 7.88 -51.93 -0.41 0.13 16 34 H 0.10 0.89 8.03 -51.93 -0.42 0.48 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.40 6.59 6.16 -40.82 -0.25 6.34 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 40 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 44 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -28.39 354.25 -8.46 -36.85 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.24 Total: 4.47 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -0.85 Total: -14.11 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.22 Total: -36.56 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.39 -8.46 -36.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315611809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.750 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds