Wall clock time and date at job start Mon Mar 30 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 C 1.50704 * 109.47089 * 240.00429 * 2 1 3 5 5 H 1.07997 * 120.00166 * 240.00477 * 4 2 1 6 6 C 1.37875 * 119.99876 * 59.99573 * 4 2 1 7 7 N 1.31519 * 120.00278 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00024 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47387 * 89.99947 * 8 6 4 10 10 H 1.48497 * 109.46984 * 210.00184 * 8 6 4 11 11 H 1.48499 * 109.46816 * 329.99546 * 8 6 4 12 12 C 1.53002 * 109.47438 * 120.00486 * 2 1 3 13 13 N 1.46501 * 109.46932 * 299.99795 * 12 2 1 14 14 C 1.34771 * 119.99915 * 180.02562 * 13 12 2 15 15 O 1.21278 * 120.00224 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00023 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47344 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.46817 * 64.99877 * 17 16 14 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99683 * 17 16 14 23 23 H 1.09005 * 109.46833 * 299.99834 * 1 2 3 24 24 H 1.09001 * 109.47593 * 59.99409 * 1 2 3 25 25 H 1.08997 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47143 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47387 * 300.00193 * 3 2 1 28 28 H 1.08997 * 109.47289 * 60.00624 * 3 2 1 29 29 H 0.96994 * 119.99923 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.46928 * 179.97438 * 12 2 1 31 31 H 1.08997 * 109.47011 * 59.99798 * 12 2 1 32 32 H 0.97002 * 119.99602 * 359.97438 * 13 12 2 33 33 H 1.09008 * 109.47224 * 59.99699 * 16 14 13 34 34 H 1.08997 * 109.47214 * 299.99692 * 16 14 13 35 35 H 1.09002 * 109.47070 * 305.00057 * 17 16 14 36 36 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 37 37 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 38 38 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 40 40 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 41 41 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 42 42 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 44 44 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 45 45 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3426 -2.1615 -4.4121 10 1 2.4863 -0.1410 -5.1123 11 1 3.6292 -1.7579 -3.7124 12 6 2.0400 -0.7214 1.2492 13 7 1.5518 -0.0308 2.4454 14 6 1.8778 -0.4910 3.6694 15 8 2.5751 -1.4771 3.7806 16 6 1.3751 0.2190 4.8999 17 6 1.8853 -0.5023 6.1491 18 6 3.4100 -0.3937 6.2137 19 6 3.9202 -1.1143 7.4632 20 6 3.3097 -0.4692 8.7090 21 6 1.7849 -0.5778 8.6445 22 6 1.2749 0.1424 7.3952 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7093 1.1619 -3.4843 30 1 3.1300 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2491 32 1 0.9944 0.7581 2.3564 33 1 0.2850 0.2182 4.9000 34 1 1.7377 1.2469 4.8999 35 1 1.5973 -1.5526 6.1053 36 1 3.8450 -0.8528 5.3260 37 1 3.6979 0.6567 6.2575 38 1 5.0065 -1.0366 7.5094 39 1 3.6323 -2.1647 7.4198 40 1 3.5976 0.5812 8.7525 41 1 3.6729 -0.9829 9.5992 42 1 1.3501 -0.1187 9.5322 43 1 1.4971 -1.6282 8.6010 44 1 1.5628 1.1927 7.4391 45 1 0.1886 0.0649 7.3492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316107814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:18 Heat of formation + Delta-G solvation = -97.349140 kcal Electronic energy + Delta-G solvation = -21017.782347 eV Core-core repulsion = 18032.690387 eV Total energy + Delta-G solvation = -2985.091961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00226 -39.18885 -37.97158 -34.95214 -33.61131 -32.62506 -31.52919 -28.62026 -27.56500 -27.36275 -26.14929 -23.45345 -22.65138 -21.15328 -20.62101 -20.49808 -18.25911 -17.58585 -16.77322 -16.51980 -16.39035 -16.12075 -15.20909 -15.10293 -14.90102 -14.78008 -14.55897 -14.25493 -13.97645 -13.32769 -13.17995 -13.08454 -12.96548 -12.85502 -12.68483 -12.59587 -12.43158 -12.23440 -12.14275 -11.93376 -11.79396 -11.48680 -11.29066 -11.26966 -11.15376 -10.86081 -10.72480 -10.44256 -10.40081 -9.85864 -8.03321 -6.19219 1.41329 1.44149 1.52454 1.80029 2.37692 2.53829 3.20049 3.76844 3.84273 3.88844 4.10341 4.29472 4.38039 4.43516 4.51184 4.55047 4.61682 4.66296 4.71628 4.72752 4.81221 4.88381 4.91927 5.00268 5.05926 5.08646 5.13476 5.19397 5.24003 5.30287 5.34654 5.37292 5.40029 5.46174 5.57895 5.66216 5.66730 5.67057 5.68780 6.15191 6.21761 6.43208 6.76453 6.85264 7.43485 7.48630 8.95488 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045726 B = 0.003455 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.193247 B = 8102.957720 C = 8385.952299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.715 5.715 14 C 0.498 3.502 15 O -0.588 6.588 16 C -0.130 4.130 17 C -0.067 4.067 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.109 4.109 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.408 0.592 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 3.002 19.938 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.025 3.975 13 N -0.367 5.367 14 C 0.287 3.713 15 O -0.469 6.469 16 C -0.169 4.169 17 C -0.086 4.086 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.147 4.147 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.245 0.755 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.577 2.430 19.853 20.009 hybrid contribution 0.295 -0.465 -1.518 1.615 sum -0.281 1.964 18.335 18.442 Atomic orbital electron populations 1.21665 0.97069 0.98580 1.00480 1.18349 0.93274 0.93038 0.90285 1.21661 0.97807 0.97831 1.00470 1.21301 1.31763 1.12163 0.91771 0.93959 1.25447 0.95140 0.95586 1.00936 1.69903 1.37004 1.23210 1.23626 0.85771 0.78644 0.78537 0.79936 1.20458 1.20690 1.20166 1.21191 0.96702 0.94948 0.84699 1.46212 1.52984 1.32001 1.05457 1.21513 0.79666 0.84422 0.85713 1.90621 1.40172 1.28739 1.87415 1.21820 1.03602 1.01076 0.90448 1.20862 0.95337 0.99124 0.93310 1.21660 0.95656 1.00391 0.98066 1.21498 0.99823 0.99207 0.94994 1.21536 0.95727 1.01093 0.96974 1.21524 0.95522 1.00549 0.98057 1.21567 1.00325 0.99976 0.92787 0.94232 0.91902 0.96484 0.96491 0.91908 0.94238 0.92991 0.94834 0.94813 0.75452 0.86704 0.86901 0.92824 0.93449 0.91859 0.92290 0.93347 0.91437 0.91507 0.90487 0.92776 0.90757 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 4 C -0.53 -28.50 8.01 25.60 0.21 -28.30 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -48.08 9.35 21.45 0.20 -47.88 16 8 Si 0.94 42.91 29.54 68.60 2.03 44.94 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 C 0.15 6.43 4.50 86.38 0.39 6.81 16 13 N -0.71 -24.35 4.96 -463.08 -2.30 -26.65 16 14 C 0.50 16.30 7.55 87.66 0.66 16.96 16 15 O -0.59 -24.18 13.97 -3.02 -0.04 -24.22 16 16 C -0.13 -2.80 5.17 29.85 0.15 -2.65 16 17 C -0.07 -1.47 1.84 -10.79 -0.02 -1.49 16 18 C -0.12 -2.91 4.94 30.59 0.15 -2.76 16 19 C -0.12 -2.46 5.92 30.60 0.18 -2.27 16 20 C -0.12 -1.82 5.92 30.60 0.18 -1.64 16 21 C -0.12 -1.76 5.92 30.58 0.18 -1.58 16 22 C -0.11 -1.68 5.20 30.58 0.16 -1.52 16 23 H 0.04 1.45 6.86 -2.38 -0.02 1.43 16 24 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 28 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 29 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.41 11.90 6.16 -92.71 -0.57 11.33 16 33 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 36 H 0.05 1.51 5.95 -2.39 -0.01 1.49 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -61.23 340.04 4.07 -57.15 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.37 Total: 20.28 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 3.82 Total: -23.62 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -2.10 Total: -74.53 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.04 Total: -24.22 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -61.23 4.07 -57.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316107814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.195 kcal (2) G-P(sol) polarization free energy of solvation -61.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds