Wall clock time and date at job start Mon Mar 30 2020 01:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46953 * 2 1 4 4 C 1.50706 * 109.47232 * 240.00177 * 2 1 3 5 5 H 1.07999 * 119.99781 * 240.00046 * 4 2 1 6 6 C 1.37879 * 119.99672 * 59.99926 * 4 2 1 7 7 N 1.31506 * 120.00331 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99571 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47460 * 89.99912 * 8 6 4 10 10 H 1.48509 * 109.46846 * 210.00134 * 8 6 4 11 11 H 1.48501 * 109.47394 * 329.99294 * 8 6 4 12 12 C 1.53003 * 109.47317 * 120.00477 * 2 1 3 13 13 N 1.46504 * 109.46615 * 299.99538 * 12 2 1 14 14 C 1.34776 * 119.99473 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00506 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99583 * 180.02562 * 14 13 12 17 17 C 1.54065 * 108.87627 * 302.97718 * 16 14 13 18 18 C 1.54066 * 112.81762 * 197.50617 * 17 16 14 19 19 C 1.50470 * 112.49875 * 318.28617 * 18 17 16 20 20 C 1.54246 * 108.51998 * 94.14981 * 19 18 17 21 21 C 1.45537 * 112.40731 * 280.01038 * 20 19 18 22 22 C 1.50473 * 108.87516 * 180.02562 * 16 14 13 23 23 H 1.08999 * 109.47220 * 299.99540 * 1 2 3 24 24 H 1.09001 * 109.47363 * 60.00104 * 1 2 3 25 25 H 1.09008 * 109.46824 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46818 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47637 * 299.99790 * 3 2 1 28 28 H 1.08994 * 109.47058 * 60.00541 * 3 2 1 29 29 H 0.97002 * 120.00295 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47133 * 180.02562 * 12 2 1 31 31 H 1.08995 * 109.47382 * 59.99818 * 12 2 1 32 32 H 0.96996 * 120.00104 * 0.02562 * 13 12 2 33 33 H 1.08996 * 108.77192 * 61.48944 * 16 14 13 34 34 H 1.09005 * 108.81720 * 318.37156 * 17 16 14 35 35 H 1.09004 * 108.81387 * 76.75403 * 17 16 14 36 36 H 1.08997 * 108.87949 * 197.51000 * 18 17 16 37 37 H 1.09001 * 108.87760 * 79.06417 * 18 17 16 38 38 H 1.09003 * 109.63195 * 334.43897 * 19 18 17 39 39 H 1.09001 * 109.62960 * 213.85940 * 19 18 17 40 40 H 1.09001 * 108.89247 * 40.76541 * 20 19 18 41 41 H 1.09004 * 108.89281 * 159.35535 * 20 19 18 42 42 H 1.09000 * 108.89458 * 182.68905 * 21 20 19 43 43 H 1.08998 * 108.89747 * 301.18352 * 21 20 19 44 44 H 1.09006 * 109.62936 * 95.21733 * 22 16 14 45 45 H 1.08998 * 109.78811 * 334.73247 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6694 15 8 2.5741 -1.4776 3.7807 16 6 1.3742 0.2186 4.9000 17 6 1.8325 1.6886 4.8494 18 6 1.7537 2.3866 6.2206 19 6 0.4998 2.0350 6.9744 20 6 0.8089 0.8521 7.9148 21 6 0.8034 -0.4261 7.2187 22 6 1.8832 -0.5011 6.1195 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 0.7089 1.1615 -3.4844 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -1.7490 1.2492 32 1 0.9938 0.7578 2.3564 33 1 0.2846 0.1888 4.9016 34 1 2.8630 1.7236 4.4958 35 1 1.2011 2.2296 4.1445 36 1 1.7834 3.4656 6.0693 37 1 2.6177 2.0920 6.8164 38 1 -0.2823 1.7490 6.2711 39 1 0.1725 2.8933 7.5611 40 1 1.7902 1.0053 8.3639 41 1 0.0594 0.8248 8.7058 42 1 0.9797 -1.2225 7.9417 43 1 -0.1754 -0.5758 6.7631 44 1 2.7980 -0.0239 6.4711 45 1 2.0849 -1.5440 5.8751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316114458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:16 Heat of formation + Delta-G solvation = -74.603124 kcal Electronic energy + Delta-G solvation = -21451.629722 eV Core-core repulsion = 18467.524103 eV Total energy + Delta-G solvation = -2984.105619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.04704 -38.01932 -36.29200 -33.40711 -32.52862 -32.10122 -30.70780 -26.13639 -25.72434 -25.30843 -24.95626 -24.02368 -20.79068 -20.62572 -19.02983 -18.73462 -17.11618 -15.88365 -15.44376 -15.37774 -14.90343 -14.59285 -14.34519 -14.10973 -13.80709 -13.23368 -13.05141 -12.89269 -12.69085 -12.24030 -12.16422 -12.07720 -11.37770 -11.22849 -11.14454 -10.86895 -10.79750 -10.72946 -10.67860 -10.50730 -10.41816 -10.37517 -10.33863 -10.19385 -9.62821 -9.45685 -9.12724 -8.77527 -8.43360 -8.27660 -6.01745 -4.11735 3.11180 3.28475 3.35413 3.39409 3.81635 4.40587 4.47760 4.60329 4.77203 5.00763 5.11106 5.12446 5.17827 5.25002 5.30017 5.35081 5.59819 5.65821 5.85987 5.89626 5.95329 6.02394 6.06427 6.13124 6.14983 6.26088 6.27923 6.33153 6.35548 6.46798 6.52316 6.80384 6.82916 6.95028 7.02482 7.08246 7.36429 7.56062 7.69781 8.01319 8.09451 8.18437 8.39374 8.76771 8.89349 9.54061 10.99618 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039574 B = 0.003976 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.372512 B = 7039.809796 C = 7364.528509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.504 3.496 15 O -0.554 6.554 16 C -0.103 4.103 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.108 4.108 23 H 0.006 0.994 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.397 0.603 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 4.049 17.004 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.366 5.366 14 C 0.290 3.710 15 O -0.433 6.433 16 C -0.125 4.125 17 C -0.147 4.147 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.145 4.145 23 H 0.025 0.975 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.232 0.768 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.704 3.458 16.899 17.333 hybrid contribution 0.015 -0.055 -1.006 1.008 sum -1.689 3.403 15.893 16.340 Atomic orbital electron populations 1.21823 0.97788 0.99136 1.00033 1.18357 0.92774 0.92774 0.90637 1.21816 0.98534 0.98344 1.00032 1.20996 1.31442 1.12064 0.89926 0.92479 1.24875 0.94882 0.94906 0.98832 1.69800 1.36751 1.22726 1.23192 0.86578 0.79334 0.79394 0.82608 1.20719 1.21268 1.19909 1.21699 0.98059 0.95763 0.83643 1.46335 1.52531 1.31686 1.06086 1.20681 0.80630 0.84660 0.85074 1.90631 1.38825 1.27032 1.86795 1.21156 1.01879 0.95532 0.93914 1.21886 1.02105 0.93079 0.97606 1.21312 0.98333 0.99763 0.95886 1.21367 0.98142 0.97798 0.98378 1.20515 1.01573 0.95197 0.98192 1.20497 0.99352 0.97490 0.98250 1.21302 0.98030 1.02172 0.93017 0.97531 0.89624 0.95489 0.95499 0.89629 0.97523 0.93029 0.92861 0.92861 0.76778 0.89134 0.91619 0.91580 0.92109 0.91986 0.91493 0.92095 0.92241 0.92636 0.92261 0.92224 0.91548 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.15 0.30 -2.64 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.33 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.62 9.35 55.43 0.52 -23.11 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 N -0.72 -12.83 4.83 -60.29 -0.29 -13.12 16 14 C 0.50 8.74 7.04 -10.98 -0.08 8.66 16 15 O -0.55 -11.65 15.24 5.56 0.08 -11.56 16 16 C -0.10 -1.32 2.03 -92.47 -0.19 -1.50 16 17 C -0.11 -1.21 4.93 -25.62 -0.13 -1.34 16 18 C -0.12 -1.05 5.31 -27.44 -0.15 -1.20 16 19 C -0.12 -1.00 5.61 -27.34 -0.15 -1.15 16 20 C -0.12 -0.98 5.26 -29.60 -0.16 -1.14 16 21 C -0.12 -1.14 5.26 -29.58 -0.16 -1.30 16 22 C -0.11 -1.30 4.91 -27.33 -0.13 -1.44 16 23 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 24 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 28 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.40 6.45 5.75 -40.82 -0.23 6.21 16 33 H 0.09 1.06 6.63 -51.93 -0.34 0.71 16 34 H 0.07 0.81 7.97 -51.93 -0.41 0.40 16 35 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.57 6.63 -51.93 -0.34 0.22 16 38 H 0.07 0.58 6.98 -51.93 -0.36 0.22 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.57 7.47 -51.93 -0.39 0.19 16 44 H 0.07 0.79 6.98 -51.93 -0.36 0.42 16 45 H 0.08 1.23 6.66 -51.93 -0.35 0.89 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -27.99 332.46 -8.56 -36.55 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.86 Total: 4.07 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.00 Total: -13.61 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.23 Total: -36.22 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.99 -8.56 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316114458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.053 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds