Wall clock time and date at job start Mon Mar 30 2020 00:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47244 * 2 1 4 4 C 1.52998 * 109.46949 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47070 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47276 * 304.99921 * 5 4 3 7 7 C 1.53000 * 109.47344 * 64.99877 * 5 4 3 8 8 C 1.50694 * 109.47314 * 185.00090 * 5 4 3 9 9 O 1.21286 * 120.00057 * 335.59939 * 8 5 4 10 10 N 1.34780 * 120.00448 * 155.59695 * 8 5 4 11 11 C 1.46498 * 119.99710 * 6.43711 * 10 8 5 12 12 C 1.50692 * 109.47298 * 93.14795 * 11 10 8 13 13 H 1.07995 * 120.00256 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99984 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99988 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46825 * 60.00175 * 16 14 12 18 18 H 1.48498 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46925 * 299.99974 * 16 14 12 20 20 C 1.46497 * 120.00309 * 186.43184 * 10 8 5 21 21 C 1.53003 * 109.46881 * 92.90013 * 20 10 8 22 22 C 1.52999 * 117.50283 * 243.02590 * 21 20 10 23 23 C 1.53001 * 117.49899 * 174.36771 * 21 20 10 24 24 H 1.08995 * 109.47549 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46839 * 299.99544 * 1 2 3 26 26 H 1.08996 * 109.47265 * 59.99230 * 1 2 3 27 27 H 1.09009 * 109.46350 * 240.00412 * 2 1 3 28 28 H 1.08996 * 109.47265 * 120.00770 * 2 1 3 29 29 H 1.08996 * 109.46916 * 60.00628 * 3 2 1 30 30 H 1.09003 * 109.47069 * 300.00152 * 3 2 1 31 31 H 1.09005 * 109.47366 * 60.00314 * 4 3 2 32 32 H 1.09001 * 109.47365 * 300.00114 * 4 3 2 33 33 H 1.09001 * 109.47101 * 53.24013 * 7 5 4 34 34 H 1.08990 * 109.47433 * 173.24115 * 7 5 4 35 35 H 1.09006 * 109.47097 * 293.24439 * 7 5 4 36 36 H 1.08998 * 109.47200 * 213.15123 * 11 10 8 37 37 H 1.09007 * 109.46707 * 333.14666 * 11 10 8 38 38 H 0.96996 * 120.00794 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47398 * 212.89622 * 20 10 8 40 40 H 1.08999 * 109.47449 * 332.90577 * 20 10 8 41 41 H 1.08999 * 115.54949 * 28.70403 * 21 20 10 42 42 H 1.09004 * 117.49576 * 0.02562 * 22 21 20 43 43 H 1.08998 * 117.49830 * 145.01918 * 22 21 20 44 44 H 1.09003 * 117.49908 * 214.98085 * 23 21 20 45 45 H 1.09001 * 117.49970 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6759 3.5682 1.3079 8 6 5.5819 2.8868 -0.1245 9 8 6.2209 1.9185 0.2293 10 7 6.2150 3.9643 -0.6290 11 6 5.4610 5.1851 -0.9246 12 6 5.5145 6.1090 0.2646 13 1 6.0564 5.8165 1.1517 14 6 4.8726 7.3285 0.2196 15 7 4.2131 7.6850 -0.8608 16 14 4.9396 8.4742 1.6936 17 1 6.3531 8.8234 1.9851 18 1 4.1751 9.7115 1.3939 19 1 4.3432 7.7980 2.8736 20 6 7.6572 3.9149 -0.8816 21 6 7.9069 3.4883 -2.3296 22 6 8.6502 2.1709 -2.5598 23 6 9.3523 3.5037 -2.8313 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9338 0.9285 0.8891 33 1 4.0086 2.9637 2.1516 34 1 4.1394 4.5532 1.3616 35 1 2.5916 3.6745 1.3423 36 1 5.8986 5.6817 -1.7906 37 1 4.4235 4.9283 -1.1389 38 1 3.7618 8.5430 -0.8926 39 1 8.0895 4.9013 -0.7139 40 1 8.1200 3.1956 -0.2060 41 1 7.1247 3.7556 -3.0400 42 1 8.9610 1.6080 -1.6796 43 1 8.3572 1.5717 -3.4218 44 1 9.5208 3.7808 -3.8720 45 1 10.1251 3.8183 -2.1300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337422602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:59 Heat of formation + Delta-G solvation = -47.323397 kcal Electronic energy + Delta-G solvation = -21264.995068 eV Core-core repulsion = 18282.072386 eV Total energy + Delta-G solvation = -2982.922682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.40951 -37.11632 -35.87865 -34.68181 -32.89831 -32.46149 -28.57224 -27.57177 -26.34880 -24.48411 -22.98695 -22.10760 -21.86978 -20.70107 -19.89605 -17.98318 -16.51307 -16.41483 -15.68399 -15.39505 -14.66608 -14.52362 -14.37902 -13.74992 -13.64196 -13.30391 -12.94836 -12.80532 -12.38891 -12.19212 -11.91275 -11.63178 -11.40333 -11.39808 -11.24779 -11.18912 -10.96491 -10.90028 -10.80522 -10.71903 -10.53533 -10.23469 -10.13766 -10.12030 -10.05340 -9.68830 -9.53464 -8.81151 -8.51422 -7.66375 -6.18249 -4.24272 3.23788 3.29024 3.31275 3.50615 3.89677 4.19418 4.33700 4.95744 5.06871 5.11251 5.13896 5.19174 5.25397 5.33267 5.42509 5.51086 5.59508 5.79777 5.82514 5.85800 5.88338 5.91113 6.00576 6.09473 6.15153 6.16864 6.19324 6.22435 6.31524 6.32614 6.37459 6.50052 6.51340 6.60126 6.63807 6.74026 6.88698 7.11320 7.24677 7.59634 7.77024 8.07235 8.42012 8.80492 9.10687 9.42218 10.88219 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.007230 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.211294 B = 3871.900305 C = 6032.890943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.098 4.098 5 C -0.103 4.103 6 H 0.092 0.908 7 C -0.150 4.150 8 C 0.522 3.478 9 O -0.575 6.575 10 N -0.595 5.595 11 C 0.236 3.764 12 C -0.533 4.533 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.148 3.852 21 C -0.159 4.159 22 C -0.177 4.177 23 C -0.180 4.180 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.265 0.735 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -9.269 -1.450 9.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.136 4.136 5 C -0.124 4.124 6 H 0.110 0.890 7 C -0.207 4.207 8 C 0.311 3.689 9 O -0.457 6.457 10 N -0.324 5.324 11 C 0.116 3.884 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.024 3.976 21 C -0.178 4.178 22 C -0.214 4.214 23 C -0.218 4.218 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.931 -9.581 -1.355 9.721 hybrid contribution -0.039 0.917 0.607 1.100 sum -0.969 -8.664 -0.749 8.750 Atomic orbital electron populations 1.21779 0.96256 1.01103 1.01790 1.21528 0.95410 0.97415 1.01804 1.21673 0.95663 0.96193 1.02302 1.21422 0.94375 0.95373 1.02441 1.21200 0.92509 0.97355 1.01298 0.88998 1.21908 1.01269 1.03099 0.94413 1.20547 0.90119 0.81989 0.76227 1.90556 1.68482 1.35521 1.51100 1.48165 1.07860 1.14594 1.61785 1.19467 0.91943 0.80216 0.96783 1.21403 1.33403 1.01621 1.00756 0.92121 1.24917 0.94938 0.97672 0.96118 1.69903 1.33265 1.22245 1.27397 0.86625 0.78322 0.80092 0.82883 1.20158 1.21161 1.20021 1.20812 0.82707 1.01651 0.92386 1.22802 0.94895 1.00988 0.99110 1.22974 1.04753 0.90747 1.02972 1.22905 0.95631 1.01607 1.01629 0.93192 0.92825 0.92817 0.92288 0.92204 0.91628 0.92074 0.92412 0.91508 0.93565 0.88588 0.92609 0.94914 0.93985 0.92479 0.90223 0.90765 0.87894 0.88819 0.89557 0.89193 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.12 -1.61 4.97 -26.73 -0.13 -1.74 16 4 C -0.10 -1.56 4.12 -26.73 -0.11 -1.67 16 5 C -0.10 -1.89 1.93 -91.78 -0.18 -2.07 16 6 H 0.09 1.73 6.29 -51.93 -0.33 1.40 16 7 C -0.15 -2.75 8.70 37.16 0.32 -2.43 16 8 C 0.52 11.03 6.77 -10.99 -0.07 10.96 16 9 O -0.58 -13.17 15.70 5.55 0.09 -13.08 16 10 N -0.59 -12.59 2.46 -175.07 -0.43 -13.02 16 11 C 0.24 5.50 4.87 -5.20 -0.03 5.48 16 12 C -0.53 -13.50 7.19 -34.44 -0.25 -13.74 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 16 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.15 2.82 5.78 -4.04 -0.02 2.80 16 21 C -0.16 -2.64 6.01 -90.62 -0.54 -3.18 16 22 C -0.18 -2.61 10.18 -26.70 -0.27 -2.88 16 23 C -0.18 -2.47 10.25 -26.70 -0.27 -2.74 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.87 6.72 -51.93 -0.35 0.52 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 2.05 5.47 -51.93 -0.28 1.77 16 35 H 0.05 0.91 6.91 -51.93 -0.36 0.55 16 36 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.04 1.01 5.72 -51.93 -0.30 0.71 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 40 H 0.07 1.44 7.00 -51.93 -0.36 1.08 16 41 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 42 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -27.36 358.57 -8.94 -36.30 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.27 Total: 4.81 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.45 Total: -12.34 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.31 Total: -36.33 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.36 -8.94 -36.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337422602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.020 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds