Wall clock time and date at job start Mon Mar 30 2020 00:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47244 * 2 1 4 4 C 1.52998 * 109.46949 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47070 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47276 * 304.99921 * 5 4 3 7 7 C 1.53000 * 109.47344 * 64.99877 * 5 4 3 8 8 C 1.50694 * 109.47314 * 185.00090 * 5 4 3 9 9 O 1.21286 * 120.00057 * 335.59939 * 8 5 4 10 10 N 1.34780 * 120.00448 * 155.59695 * 8 5 4 11 11 C 1.46498 * 119.99710 * 6.43711 * 10 8 5 12 12 C 1.50692 * 109.47298 * 93.14795 * 11 10 8 13 13 H 1.07995 * 120.00256 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99984 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99988 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46825 * 60.00175 * 16 14 12 18 18 H 1.48498 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46925 * 299.99974 * 16 14 12 20 20 C 1.46497 * 120.00309 * 186.43184 * 10 8 5 21 21 C 1.53003 * 109.46881 * 92.90013 * 20 10 8 22 22 C 1.52999 * 117.50283 * 243.02590 * 21 20 10 23 23 C 1.53001 * 117.49899 * 174.36771 * 21 20 10 24 24 H 1.08995 * 109.47549 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46839 * 299.99544 * 1 2 3 26 26 H 1.08996 * 109.47265 * 59.99230 * 1 2 3 27 27 H 1.09009 * 109.46350 * 240.00412 * 2 1 3 28 28 H 1.08996 * 109.47265 * 120.00770 * 2 1 3 29 29 H 1.08996 * 109.46916 * 60.00628 * 3 2 1 30 30 H 1.09003 * 109.47069 * 300.00152 * 3 2 1 31 31 H 1.09005 * 109.47366 * 60.00314 * 4 3 2 32 32 H 1.09001 * 109.47365 * 300.00114 * 4 3 2 33 33 H 1.09001 * 109.47101 * 53.24013 * 7 5 4 34 34 H 1.08990 * 109.47433 * 173.24115 * 7 5 4 35 35 H 1.09006 * 109.47097 * 293.24439 * 7 5 4 36 36 H 1.08998 * 109.47200 * 213.15123 * 11 10 8 37 37 H 1.09007 * 109.46707 * 333.14666 * 11 10 8 38 38 H 0.96996 * 120.00794 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.47398 * 212.89622 * 20 10 8 40 40 H 1.08999 * 109.47449 * 332.90577 * 20 10 8 41 41 H 1.08999 * 115.54949 * 28.70403 * 21 20 10 42 42 H 1.09004 * 117.49576 * 0.02562 * 22 21 20 43 43 H 1.08998 * 117.49830 * 145.01918 * 22 21 20 44 44 H 1.09003 * 117.49908 * 214.98085 * 23 21 20 45 45 H 1.09001 * 117.49970 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4245 -0.8413 7 6 3.6759 3.5682 1.3079 8 6 5.5819 2.8868 -0.1245 9 8 6.2209 1.9185 0.2293 10 7 6.2150 3.9643 -0.6290 11 6 5.4610 5.1851 -0.9246 12 6 5.5145 6.1090 0.2646 13 1 6.0564 5.8165 1.1517 14 6 4.8726 7.3285 0.2196 15 7 4.2131 7.6850 -0.8608 16 14 4.9396 8.4742 1.6936 17 1 6.3531 8.8234 1.9851 18 1 4.1751 9.7115 1.3939 19 1 4.3432 7.7980 2.8736 20 6 7.6572 3.9149 -0.8816 21 6 7.9069 3.4883 -2.3296 22 6 8.6502 2.1709 -2.5598 23 6 9.3523 3.5037 -2.8313 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9338 0.9285 0.8891 33 1 4.0086 2.9637 2.1516 34 1 4.1394 4.5532 1.3616 35 1 2.5916 3.6745 1.3423 36 1 5.8986 5.6817 -1.7906 37 1 4.4235 4.9283 -1.1389 38 1 3.7618 8.5430 -0.8926 39 1 8.0895 4.9013 -0.7139 40 1 8.1200 3.1956 -0.2060 41 1 7.1247 3.7556 -3.0400 42 1 8.9610 1.6080 -1.6796 43 1 8.3572 1.5717 -3.4218 44 1 9.5208 3.7808 -3.8720 45 1 10.1251 3.8183 -2.1300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337422602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:59 Heat of formation + Delta-G solvation = -58.989620 kcal Electronic energy + Delta-G solvation = -21265.500953 eV Core-core repulsion = 18282.072386 eV Total energy + Delta-G solvation = -2983.428567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06427 -38.43215 -37.11851 -36.44567 -34.40326 -34.11138 -29.93002 -29.23553 -27.98430 -25.79458 -24.88813 -23.26685 -23.08099 -21.83294 -21.26665 -19.66958 -18.42660 -18.07320 -17.31598 -16.57755 -16.29722 -16.09571 -15.79698 -15.05896 -14.90366 -14.68698 -14.35567 -14.15711 -13.92920 -13.70091 -13.38759 -13.20998 -13.01652 -12.85226 -12.62235 -12.58533 -12.49127 -12.35975 -12.09543 -12.05326 -11.85592 -11.78559 -11.63995 -11.44480 -11.34876 -11.28339 -10.85245 -10.61623 -10.37598 -9.43086 -8.17802 -6.30047 1.43229 1.44296 1.51395 1.80658 2.28961 2.46152 2.93173 3.12198 3.70586 3.83564 3.88483 4.00594 4.03305 4.12314 4.26615 4.29983 4.40352 4.40838 4.52826 4.67177 4.74721 4.75595 4.81703 4.85054 4.89084 4.93869 4.99472 5.01051 5.05159 5.08003 5.16102 5.22184 5.24901 5.26020 5.28239 5.39669 5.44428 5.54666 5.60598 5.68433 5.88753 6.08969 6.61158 6.84323 7.33386 7.44996 8.87671 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.007230 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.211294 B = 3871.900305 C = 6032.890943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.089 4.089 5 C -0.100 4.100 6 H 0.086 0.914 7 C -0.142 4.142 8 C 0.516 3.484 9 O -0.595 6.595 10 N -0.598 5.598 11 C 0.253 3.747 12 C -0.536 4.536 13 H 0.050 0.950 14 C 0.027 3.973 15 N -0.918 5.918 16 Si 0.949 3.051 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.270 1.270 20 C 0.148 3.852 21 C -0.184 4.184 22 C -0.172 4.172 23 C -0.155 4.155 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.016 0.984 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -9.755 -1.318 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.127 4.127 5 C -0.121 4.121 6 H 0.105 0.895 7 C -0.200 4.200 8 C 0.306 3.694 9 O -0.478 6.478 10 N -0.327 5.327 11 C 0.132 3.868 12 C -0.575 4.575 13 H 0.069 0.931 14 C -0.174 4.174 15 N -0.557 5.557 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.195 1.195 20 C 0.025 3.975 21 C -0.203 4.203 22 C -0.209 4.209 23 C -0.193 4.193 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.164 -10.072 -1.225 10.213 hybrid contribution 0.084 1.044 0.554 1.185 sum -1.080 -9.028 -0.670 9.117 Atomic orbital electron populations 1.21761 0.94944 1.02052 1.01974 1.21508 0.96534 0.95934 1.02009 1.21639 0.93461 0.97738 1.02475 1.21351 0.96267 0.93201 1.01843 1.21238 0.90652 0.99141 1.01096 0.89549 1.21815 1.02388 1.01293 0.94480 1.21034 0.91262 0.81512 0.75632 1.90534 1.69201 1.36043 1.51996 1.48192 1.08731 1.14033 1.61718 1.19114 0.91586 0.80588 0.95504 1.21502 1.33071 1.02122 1.00775 0.93146 1.25552 0.94611 0.98909 0.98320 1.69988 1.34016 1.22742 1.28929 0.85737 0.78268 0.78388 0.80101 1.19989 1.20697 1.19546 1.20865 0.81427 1.01130 0.94100 1.22622 0.96827 1.03639 0.97242 1.23012 1.03971 0.90621 1.03249 1.23027 0.93440 0.99938 1.02864 0.91908 0.92610 0.92688 0.92131 0.92027 0.91349 0.91969 0.92856 0.92203 0.93089 0.91592 0.90471 0.96639 0.94692 0.92342 0.90934 0.91425 0.89045 0.89388 0.88164 0.87165 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.12 -2.59 5.93 30.60 0.18 -2.41 16 3 C -0.12 -2.92 4.97 30.60 0.15 -2.76 16 4 C -0.09 -2.77 4.12 30.59 0.13 -2.64 16 5 C -0.10 -3.71 1.93 -11.54 -0.02 -3.73 16 6 H 0.09 3.29 6.29 -2.39 -0.02 3.27 16 7 C -0.14 -5.20 8.70 71.98 0.63 -4.57 16 8 C 0.52 22.10 6.77 87.65 0.59 22.69 16 9 O -0.59 -27.49 15.70 -3.05 -0.05 -27.54 16 10 N -0.60 -25.91 2.46 -826.17 -2.03 -27.94 16 11 C 0.25 12.11 4.87 85.63 0.42 12.52 16 12 C -0.54 -27.52 7.19 25.60 0.18 -27.33 16 13 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 14 C 0.03 1.38 5.46 84.66 0.46 1.84 16 15 N -0.92 -49.81 13.29 21.45 0.28 -49.52 16 16 Si 0.95 41.35 29.54 68.60 2.03 43.37 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C 0.15 5.74 5.78 86.38 0.50 6.24 16 21 C -0.18 -6.09 6.01 -10.79 -0.06 -6.15 16 22 C -0.17 -4.83 10.18 30.62 0.31 -4.52 16 23 C -0.16 -3.96 10.25 30.62 0.31 -3.65 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.69 6.72 -2.39 -0.02 1.67 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.06 1.95 8.03 -2.39 -0.02 1.93 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.84 5.47 -2.39 -0.01 2.82 16 35 H 0.08 2.45 6.91 -2.38 -0.02 2.43 16 36 H 0.02 0.79 8.10 -2.39 -0.02 0.77 16 37 H 0.04 1.73 5.72 -2.38 -0.01 1.71 16 38 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 39 H 0.07 2.84 8.09 -2.39 -0.02 2.82 16 40 H 0.07 2.68 7.00 -2.39 -0.02 2.66 16 41 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.09 2.59 8.03 -2.38 -0.02 2.57 16 43 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -57.77 358.57 5.66 -52.11 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.93 Total: 25.97 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.49 Total: -16.45 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -1.74 Total: -77.46 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -57.77 5.66 -52.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337422602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.877 kcal (2) G-P(sol) polarization free energy of solvation -57.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds