Wall clock time and date at job start Mon Mar 30 2020 00:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 C 1.52999 * 109.47130 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46956 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47297 * 55.00683 * 5 4 3 7 7 C 1.52998 * 109.47686 * 295.00013 * 5 4 3 8 8 C 1.50710 * 109.46963 * 175.00335 * 5 4 3 9 9 O 1.21277 * 119.99695 * 14.42724 * 8 5 4 10 10 N 1.34776 * 120.00093 * 194.43392 * 8 5 4 11 11 C 1.46504 * 119.99796 * 4.36049 * 10 8 5 12 12 C 1.50701 * 109.47130 * 95.49825 * 11 10 8 13 13 H 1.07998 * 120.00069 * 359.97438 * 12 11 10 14 14 C 1.37870 * 119.99855 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00263 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47150 * 59.99494 * 16 14 12 18 18 H 1.48501 * 109.47350 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47157 * 299.99642 * 16 14 12 20 20 C 1.46502 * 119.99997 * 184.35924 * 10 8 5 21 21 C 1.53002 * 109.46701 * 84.63982 * 20 10 8 22 22 C 1.52998 * 117.49688 * 243.74544 * 21 20 10 23 23 C 1.53000 * 117.49500 * 175.08436 * 21 20 10 24 24 H 1.08999 * 109.46371 * 299.99431 * 1 2 3 25 25 H 1.08998 * 109.47242 * 59.99878 * 1 2 3 26 26 H 1.09000 * 109.46760 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46752 * 240.00947 * 2 1 3 28 28 H 1.08995 * 109.47692 * 119.99873 * 2 1 3 29 29 H 1.09003 * 109.47465 * 300.00517 * 3 2 1 30 30 H 1.09006 * 109.46829 * 60.00480 * 3 2 1 31 31 H 1.09003 * 109.47376 * 300.00580 * 4 3 2 32 32 H 1.09006 * 109.46864 * 60.00511 * 4 3 2 33 33 H 1.08999 * 109.46918 * 306.55162 * 7 5 4 34 34 H 1.09004 * 109.47035 * 66.54810 * 7 5 4 35 35 H 1.08991 * 109.47602 * 186.54998 * 7 5 4 36 36 H 1.09000 * 109.46528 * 215.49466 * 11 10 8 37 37 H 1.08995 * 109.46957 * 335.49677 * 11 10 8 38 38 H 0.97005 * 120.00289 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46670 * 204.63729 * 20 10 8 40 40 H 1.08998 * 109.46876 * 324.63871 * 20 10 8 41 41 H 1.08998 * 115.55093 * 29.42090 * 21 20 10 42 42 H 1.09003 * 117.49792 * 0.02562 * 22 21 20 43 43 H 1.08997 * 117.49807 * 145.02382 * 22 21 20 44 44 H 1.09000 * 117.50229 * 214.97680 * 23 21 20 45 45 H 1.08999 * 117.49991 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 1 3.6450 3.4239 0.8432 7 6 3.6757 3.5697 -1.3060 8 6 5.5818 2.8870 0.1257 9 8 6.2065 1.8634 -0.0557 10 7 6.2307 4.0260 0.4387 11 6 5.4715 5.2393 0.7515 12 6 5.3083 5.3586 2.2449 13 1 5.7277 4.6058 2.8958 14 6 4.6225 6.4283 2.7801 15 7 4.1113 7.3447 1.9875 16 14 4.4196 6.5759 4.6312 17 1 5.7575 6.6506 5.2715 18 1 3.6501 7.8057 4.9484 19 1 3.6904 5.3888 5.1454 20 6 7.6953 4.0509 0.4660 21 6 8.2275 4.2995 -0.9468 22 6 9.0601 3.1906 -1.5933 23 6 9.7383 4.4756 -1.1116 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8935 -0.5138 0.8899 29 1 1.6766 1.9565 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.9330 0.9289 0.8908 32 1 3.9337 0.9287 -0.8892 33 1 4.0118 2.9678 -2.1502 34 1 2.5911 3.6726 -1.3420 35 1 4.1361 4.5562 -1.3570 36 1 6.0068 6.1104 0.3738 37 1 4.4894 5.1845 0.2819 38 1 3.6291 8.0975 2.3641 39 1 8.0328 4.8492 1.1271 40 1 8.0681 3.0942 0.8317 41 1 7.5785 4.8859 -1.5972 42 1 9.2283 2.2838 -1.0122 43 1 8.9592 3.0477 -2.6691 44 1 10.0834 5.1775 -1.8709 45 1 10.3532 4.4140 -0.2137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337422603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:01 Heat of formation + Delta-G solvation = -47.133216 kcal Electronic energy + Delta-G solvation = -21250.638056 eV Core-core repulsion = 18267.723621 eV Total energy + Delta-G solvation = -2982.914435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.42650 -37.09337 -35.86259 -34.68836 -32.95205 -32.45361 -28.61644 -27.64053 -26.24889 -24.64761 -22.95085 -22.08937 -21.79164 -20.68144 -19.96250 -17.96179 -16.59081 -16.38497 -15.56856 -15.40983 -14.67575 -14.51816 -14.41742 -13.86827 -13.63434 -13.38984 -12.87733 -12.73365 -12.48134 -12.17459 -11.92600 -11.87433 -11.44739 -11.31121 -11.23325 -11.15221 -11.07682 -10.91975 -10.71900 -10.68668 -10.54459 -10.29712 -10.18571 -10.14245 -10.05072 -9.67218 -9.53239 -8.82478 -8.51402 -7.65783 -6.17248 -4.24384 3.24467 3.29362 3.31852 3.51016 3.90560 4.21579 4.34757 4.97135 5.08826 5.10747 5.15922 5.19051 5.27073 5.34200 5.40762 5.49560 5.55954 5.76083 5.81786 5.87152 5.88804 5.90173 5.95801 6.06713 6.13748 6.17363 6.18109 6.23701 6.30326 6.30809 6.37120 6.39805 6.46331 6.47753 6.63728 6.74377 6.78700 6.88139 7.23455 7.60820 7.77845 8.08118 8.43634 8.81361 9.11476 9.43618 10.89240 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.007550 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.034980 B = 3707.485834 C = 5978.932412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.095 4.095 5 C -0.110 4.110 6 H 0.106 0.894 7 C -0.139 4.139 8 C 0.522 3.478 9 O -0.573 6.573 10 N -0.594 5.594 11 C 0.231 3.769 12 C -0.538 4.538 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.151 3.849 21 C -0.158 4.158 22 C -0.173 4.173 23 C -0.182 4.182 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.049 0.951 38 H 0.265 0.735 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -7.409 -5.846 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.133 4.133 5 C -0.131 4.131 6 H 0.124 0.876 7 C -0.196 4.196 8 C 0.310 3.690 9 O -0.454 6.454 10 N -0.323 5.323 11 C 0.112 3.888 12 C -0.577 4.577 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.530 5.530 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.027 3.973 21 C -0.177 4.177 22 C -0.210 4.210 23 C -0.220 4.220 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.418 -7.726 -5.926 9.746 hybrid contribution -0.149 0.426 1.088 1.178 sum -0.568 -7.300 -4.838 8.776 Atomic orbital electron populations 1.21781 0.96275 1.01096 1.01774 1.21524 0.95391 0.97417 1.01821 1.21687 0.95721 0.96234 1.02275 1.21363 0.94230 0.95113 1.02580 1.21257 0.92911 0.97973 1.00978 0.87620 1.21787 1.01559 1.00798 0.95494 1.20506 0.89907 0.82838 0.75732 1.90559 1.69405 1.32624 1.52815 1.48171 1.05669 1.12292 1.66191 1.19571 0.92103 0.81041 0.96127 1.21477 1.35647 1.08578 0.91968 0.92246 1.24920 0.95166 0.95365 0.98279 1.69909 1.36060 1.11996 1.35020 0.86598 0.78377 0.77522 0.85231 1.20156 1.21135 1.20102 1.20797 0.81183 1.01921 0.93372 1.22784 0.93060 1.02480 0.99385 1.22940 1.04633 0.93113 1.00341 1.22918 0.95392 1.00573 1.03070 0.92763 0.92888 0.93202 0.92274 0.92191 0.91856 0.91839 0.91957 0.91796 0.93072 0.91942 0.91517 0.95003 0.93294 0.92498 0.89989 0.91274 0.88067 0.88799 0.89639 0.89245 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.45 5.93 -26.73 -0.16 -1.61 16 3 C -0.12 -1.63 4.97 -26.73 -0.13 -1.77 16 4 C -0.09 -1.52 4.00 -26.73 -0.11 -1.63 16 5 C -0.11 -2.01 1.86 -91.77 -0.17 -2.18 16 6 H 0.11 2.12 7.25 -51.93 -0.38 1.75 16 7 C -0.14 -2.25 8.35 37.16 0.31 -1.94 16 8 C 0.52 10.95 6.85 -10.98 -0.08 10.88 16 9 O -0.57 -12.98 15.72 5.56 0.09 -12.89 16 10 N -0.59 -12.60 2.47 -175.05 -0.43 -13.03 16 11 C 0.23 5.45 4.56 -5.19 -0.02 5.42 16 12 C -0.54 -14.00 9.38 -34.44 -0.32 -14.32 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.37 13.29 55.43 0.74 -23.64 16 16 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.15 2.89 5.69 -4.04 -0.02 2.87 16 21 C -0.16 -2.64 5.97 -90.62 -0.54 -3.18 16 22 C -0.17 -2.59 10.18 -26.69 -0.27 -2.86 16 23 C -0.18 -2.50 10.25 -26.69 -0.27 -2.78 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.81 6.72 -51.93 -0.35 0.46 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.90 6.90 -51.93 -0.36 0.54 16 35 H 0.07 1.17 6.31 -51.93 -0.33 0.84 16 36 H 0.03 0.80 8.11 -51.93 -0.42 0.37 16 37 H 0.05 1.16 4.57 -51.93 -0.24 0.92 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 40 H 0.07 1.35 7.26 -51.93 -0.38 0.97 16 41 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 360.82 15.07 5.44 5.44 Total: -1.00 -27.89 360.82 -9.03 -36.93 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.32 Total: 4.30 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.52 Total: -12.65 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.30 Total: -36.67 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.89 -9.03 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337422603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.208 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds