Wall clock time and date at job start Mon Mar 30 2020 00:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46890 * 2 1 4 4 C 1.53004 * 109.47153 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47153 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47437 * 304.99434 * 5 4 3 7 7 C 1.52993 * 109.47431 * 64.99637 * 5 4 3 8 8 C 1.52996 * 109.47388 * 184.80535 * 7 5 4 9 9 C 1.53009 * 109.46983 * 184.99850 * 5 4 3 10 10 C 1.50696 * 109.47093 * 66.83365 * 9 5 4 11 11 O 1.21290 * 120.00060 * 6.21902 * 10 9 5 12 12 N 1.34773 * 120.00091 * 186.21685 * 10 9 5 13 13 C 1.37098 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99857 * 138.38574 * 13 12 10 15 15 C 1.38949 * 119.99842 * 318.38921 * 13 12 10 16 16 N 1.31413 * 119.99967 * 159.51817 * 15 13 12 17 17 Si 1.86799 * 119.99931 * 339.51575 * 15 13 12 18 18 H 1.48504 * 109.46793 * 95.28553 * 17 15 13 19 19 H 1.48499 * 109.46670 * 215.28142 * 17 15 13 20 20 H 1.48485 * 109.47191 * 335.28205 * 17 15 13 21 21 C 1.46504 * 119.99866 * 0.02562 * 12 10 9 22 22 C 1.52994 * 117.49851 * 183.94991 * 21 12 10 23 23 C 1.52991 * 117.49935 * 115.28796 * 21 12 10 24 24 H 1.08994 * 109.47685 * 60.00138 * 1 2 3 25 25 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47051 * 299.99922 * 1 2 3 27 27 H 1.09008 * 109.46724 * 239.99824 * 2 1 3 28 28 H 1.08997 * 109.47045 * 120.00230 * 2 1 3 29 29 H 1.09007 * 109.46977 * 300.00127 * 3 2 1 30 30 H 1.08994 * 109.47536 * 60.00263 * 3 2 1 31 31 H 1.08997 * 109.46515 * 300.00067 * 4 3 2 32 32 H 1.08994 * 109.47082 * 59.99498 * 4 3 2 33 33 H 1.09002 * 109.47618 * 304.80758 * 7 5 4 34 34 H 1.09003 * 109.47290 * 64.80821 * 7 5 4 35 35 H 1.09003 * 109.47696 * 301.11500 * 8 7 5 36 36 H 1.08999 * 109.47451 * 61.11423 * 8 7 5 37 37 H 1.09000 * 109.47613 * 181.11694 * 8 7 5 38 38 H 1.09000 * 109.47015 * 186.83516 * 9 5 4 39 39 H 1.08997 * 109.46912 * 306.83238 * 9 5 4 40 40 H 0.96995 * 120.00106 * 180.02562 * 16 15 13 41 41 H 1.09003 * 115.54846 * 329.61504 * 21 12 10 42 42 H 1.09000 * 117.50094 * 359.97438 * 22 21 12 43 43 H 1.09007 * 117.50095 * 145.01817 * 22 21 12 44 44 H 1.09003 * 117.50172 * 214.98261 * 23 21 12 45 45 H 1.09005 * 117.50290 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 3.6757 3.5683 1.3078 8 6 4.0801 5.0430 1.2590 9 6 5.6048 2.8869 -0.1263 10 6 5.9969 2.3676 -1.4856 11 8 5.1434 2.1358 -2.3156 12 7 7.2959 2.1606 -1.7789 13 6 7.6527 1.6886 -3.0156 14 1 8.5120 2.1008 -3.5236 15 6 6.9086 0.6801 -3.6155 16 7 6.9740 0.4999 -4.9156 17 14 5.8154 -0.4197 -2.5739 18 1 4.4289 0.1121 -2.5800 19 1 5.8205 -1.7952 -3.1334 20 1 6.3278 -0.4501 -1.1806 21 6 8.3268 2.4401 -0.7761 22 6 9.7876 2.2734 -1.1994 23 6 9.1435 1.2565 -0.2538 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6765 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.9336 0.9286 0.8891 32 1 3.9329 0.9288 -0.8908 33 1 2.5963 3.4917 1.4393 34 1 4.1789 3.0811 2.1430 35 1 5.1568 5.1198 1.1077 36 1 3.5617 5.5349 0.4359 37 1 3.8099 5.5253 2.1984 38 1 5.9782 3.9037 -0.0043 39 1 6.0340 2.2472 0.6448 40 1 6.4543 -0.2039 -5.3344 41 1 8.0945 3.2405 -0.0736 42 1 9.9816 1.9555 -2.2237 43 1 10.5165 2.9639 -0.7749 44 1 9.4489 1.2782 0.7923 45 1 8.9136 0.2697 -0.6559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343658195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:31 Heat of formation + Delta-G solvation = -30.624020 kcal Electronic energy + Delta-G solvation = -21913.495799 eV Core-core repulsion = 18931.297256 eV Total energy + Delta-G solvation = -2982.198542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.35636 -37.29734 -36.05294 -34.31548 -32.84163 -31.42852 -30.40989 -28.93032 -25.62819 -23.98856 -22.65146 -21.93367 -21.42435 -20.85855 -19.87643 -18.75057 -16.96870 -16.23351 -15.45459 -15.31056 -14.63224 -14.48294 -14.07072 -13.73659 -13.54331 -13.48238 -13.16111 -12.74462 -12.59665 -12.41756 -12.16243 -12.02607 -11.56486 -11.52806 -11.16639 -11.05357 -10.95233 -10.83079 -10.69839 -10.48517 -10.30873 -10.16646 -10.05591 -9.97696 -9.90253 -9.83924 -9.59590 -8.48850 -8.32098 -7.42441 -6.16232 -3.90967 3.33087 3.48937 3.64592 3.84245 4.40279 4.51514 4.67706 4.93380 5.03467 5.11245 5.15484 5.23588 5.32874 5.33718 5.46777 5.57167 5.60095 5.63399 5.69306 5.73393 5.79769 5.90499 5.95247 5.95376 6.00391 6.03534 6.09697 6.16296 6.18095 6.19445 6.26959 6.31700 6.36847 6.46401 6.51901 6.57611 6.71593 6.86083 6.87102 6.92685 7.88567 8.03597 8.83271 8.98912 9.47975 9.89580 10.89016 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.007810 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.823104 B = 3584.228141 C = 4746.296286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.114 4.114 4 C -0.128 4.128 5 C -0.069 4.069 6 H 0.079 0.921 7 C -0.120 4.120 8 C -0.154 4.154 9 C -0.133 4.133 10 C 0.454 3.546 11 O -0.539 6.539 12 N -0.440 5.440 13 C -0.349 4.349 14 H 0.094 0.906 15 C 0.093 3.907 16 N -0.867 5.867 17 Si 0.907 3.093 18 H -0.247 1.247 19 H -0.313 1.313 20 H -0.279 1.279 21 C 0.066 3.934 22 C -0.174 4.174 23 C -0.200 4.200 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.271 0.729 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 3.478 14.047 15.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.152 4.152 4 C -0.166 4.166 5 C -0.088 4.088 6 H 0.098 0.902 7 C -0.158 4.158 8 C -0.211 4.211 9 C -0.173 4.173 10 C 0.245 3.755 11 O -0.422 6.422 12 N -0.161 5.161 13 C -0.475 4.475 14 H 0.111 0.889 15 C -0.116 4.116 16 N -0.502 5.502 17 Si 0.738 3.262 18 H -0.173 1.173 19 H -0.243 1.243 20 H -0.205 1.205 21 C -0.040 4.040 22 C -0.212 4.212 23 C -0.239 4.239 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.523 3.289 13.433 14.892 hybrid contribution -0.247 -0.663 0.473 0.851 sum -5.770 2.626 13.906 15.283 Atomic orbital electron populations 1.21765 0.96272 1.01145 1.01524 1.21561 0.95395 0.97696 1.01939 1.21599 0.96010 0.96070 1.01502 1.21866 0.95008 0.96830 1.02849 1.20908 0.94028 0.96429 0.97449 0.90213 1.21642 1.00959 0.95432 0.97717 1.21840 1.01741 0.96485 1.01056 1.21741 0.97009 1.01882 0.96673 1.20315 0.83338 0.82303 0.89569 1.90515 1.48550 1.53307 1.49801 1.43206 1.03099 1.58181 1.11611 1.18726 1.17336 1.19967 0.91449 0.88879 1.25278 0.95435 0.95846 0.95039 1.69759 1.39993 1.31146 1.09295 0.86522 0.83490 0.76472 0.79727 1.17309 1.24276 1.20502 1.21807 0.88261 0.98744 0.95213 1.23126 0.94426 1.02093 1.01540 1.23265 1.06031 0.96563 0.98036 0.92800 0.93149 0.93055 0.92023 0.92398 0.92040 0.92414 0.93149 0.89725 0.91878 0.92392 0.92470 0.92767 0.93324 0.89930 0.90626 0.91938 0.87267 0.87202 0.89546 0.89641 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.36 16 2 C -0.13 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.11 -1.68 4.98 -26.73 -0.13 -1.82 16 4 C -0.13 -2.22 4.49 -26.73 -0.12 -2.34 16 5 C -0.07 -1.13 1.50 -90.62 -0.14 -1.27 16 6 H 0.08 1.45 7.79 -51.93 -0.40 1.05 16 7 C -0.12 -1.51 5.27 -26.74 -0.14 -1.65 16 8 C -0.15 -1.75 9.70 37.16 0.36 -1.39 16 9 C -0.13 -2.33 3.61 -27.88 -0.10 -2.43 16 10 C 0.45 10.65 5.48 -10.99 -0.06 10.59 16 11 O -0.54 -14.60 10.11 5.55 0.06 -14.54 16 12 N -0.44 -10.57 2.51 -107.74 -0.27 -10.84 16 13 C -0.35 -9.83 8.68 -14.93 -0.13 -9.96 16 14 H 0.09 2.74 6.98 -52.49 -0.37 2.38 16 15 C 0.09 2.75 4.82 -17.47 -0.08 2.67 16 16 N -0.87 -26.81 13.96 55.50 0.77 -26.03 16 17 Si 0.91 24.31 23.66 -169.99 -4.02 20.29 16 18 H -0.25 -6.76 5.28 56.52 0.30 -6.46 16 19 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 20 H -0.28 -7.23 7.10 56.52 0.40 -6.83 16 21 C 0.07 1.24 5.77 -67.94 -0.39 0.85 16 22 C -0.17 -3.03 9.81 -26.70 -0.26 -3.29 16 23 C -0.20 -3.47 10.35 -26.70 -0.28 -3.75 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.06 0.73 6.46 -51.93 -0.34 0.40 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.83 3.83 -51.93 -0.20 1.63 16 33 H 0.06 0.74 6.35 -51.93 -0.33 0.41 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.65 6.37 -51.93 -0.33 0.32 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.28 5.96 -51.93 -0.31 0.97 16 39 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 40 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16 41 H 0.11 1.72 7.11 -51.93 -0.37 1.35 16 42 H 0.11 2.19 6.50 -51.93 -0.34 1.85 16 43 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -32.09 339.46 -7.74 -39.83 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.13 Total: 3.25 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.26 Total: -17.08 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.50 Total: -36.87 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.06 Total: -14.54 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.02 Total: 20.29 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.09 -7.74 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343658195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.209 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds