Wall clock time and date at job start Mon Mar 30 2020 00:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46890 * 2 1 4 4 C 1.53004 * 109.47153 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47153 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47437 * 304.99434 * 5 4 3 7 7 C 1.52993 * 109.47431 * 64.99637 * 5 4 3 8 8 C 1.52996 * 109.47388 * 184.80535 * 7 5 4 9 9 C 1.53009 * 109.46983 * 184.99850 * 5 4 3 10 10 C 1.50696 * 109.47093 * 66.83365 * 9 5 4 11 11 O 1.21290 * 120.00060 * 6.21902 * 10 9 5 12 12 N 1.34773 * 120.00091 * 186.21685 * 10 9 5 13 13 C 1.37098 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99857 * 138.38574 * 13 12 10 15 15 C 1.38949 * 119.99842 * 318.38921 * 13 12 10 16 16 N 1.31413 * 119.99967 * 159.51817 * 15 13 12 17 17 Si 1.86799 * 119.99931 * 339.51575 * 15 13 12 18 18 H 1.48504 * 109.46793 * 95.28553 * 17 15 13 19 19 H 1.48499 * 109.46670 * 215.28142 * 17 15 13 20 20 H 1.48485 * 109.47191 * 335.28205 * 17 15 13 21 21 C 1.46504 * 119.99866 * 0.02562 * 12 10 9 22 22 C 1.52994 * 117.49851 * 183.94991 * 21 12 10 23 23 C 1.52991 * 117.49935 * 115.28796 * 21 12 10 24 24 H 1.08994 * 109.47685 * 60.00138 * 1 2 3 25 25 H 1.09003 * 109.46962 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47051 * 299.99922 * 1 2 3 27 27 H 1.09008 * 109.46724 * 239.99824 * 2 1 3 28 28 H 1.08997 * 109.47045 * 120.00230 * 2 1 3 29 29 H 1.09007 * 109.46977 * 300.00127 * 3 2 1 30 30 H 1.08994 * 109.47536 * 60.00263 * 3 2 1 31 31 H 1.08997 * 109.46515 * 300.00067 * 4 3 2 32 32 H 1.08994 * 109.47082 * 59.99498 * 4 3 2 33 33 H 1.09002 * 109.47618 * 304.80758 * 7 5 4 34 34 H 1.09003 * 109.47290 * 64.80821 * 7 5 4 35 35 H 1.09003 * 109.47696 * 301.11500 * 8 7 5 36 36 H 1.08999 * 109.47451 * 61.11423 * 8 7 5 37 37 H 1.09000 * 109.47613 * 181.11694 * 8 7 5 38 38 H 1.09000 * 109.47015 * 186.83516 * 9 5 4 39 39 H 1.08997 * 109.46912 * 306.83238 * 9 5 4 40 40 H 0.96995 * 120.00106 * 180.02562 * 16 15 13 41 41 H 1.09003 * 115.54846 * 329.61504 * 21 12 10 42 42 H 1.09000 * 117.50094 * 359.97438 * 22 21 12 43 43 H 1.09007 * 117.50095 * 145.01817 * 22 21 12 44 44 H 1.09003 * 117.50172 * 214.98261 * 23 21 12 45 45 H 1.09005 * 117.50290 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 3.6757 3.5683 1.3078 8 6 4.0801 5.0430 1.2590 9 6 5.6048 2.8869 -0.1263 10 6 5.9969 2.3676 -1.4856 11 8 5.1434 2.1358 -2.3156 12 7 7.2959 2.1606 -1.7789 13 6 7.6527 1.6886 -3.0156 14 1 8.5120 2.1008 -3.5236 15 6 6.9086 0.6801 -3.6155 16 7 6.9740 0.4999 -4.9156 17 14 5.8154 -0.4197 -2.5739 18 1 4.4289 0.1121 -2.5800 19 1 5.8205 -1.7952 -3.1334 20 1 6.3278 -0.4501 -1.1806 21 6 8.3268 2.4401 -0.7761 22 6 9.7876 2.2734 -1.1994 23 6 9.1435 1.2565 -0.2538 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6765 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.9336 0.9286 0.8891 32 1 3.9329 0.9288 -0.8908 33 1 2.5963 3.4917 1.4393 34 1 4.1789 3.0811 2.1430 35 1 5.1568 5.1198 1.1077 36 1 3.5617 5.5349 0.4359 37 1 3.8099 5.5253 2.1984 38 1 5.9782 3.9037 -0.0043 39 1 6.0340 2.2472 0.6448 40 1 6.4543 -0.2039 -5.3344 41 1 8.0945 3.2405 -0.0736 42 1 9.9816 1.9555 -2.2237 43 1 10.5165 2.9639 -0.7749 44 1 9.4489 1.2782 0.7923 45 1 8.9136 0.2697 -0.6559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343658195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:30 Heat of formation + Delta-G solvation = -49.577865 kcal Electronic energy + Delta-G solvation = -21914.317699 eV Core-core repulsion = 18931.297256 eV Total energy + Delta-G solvation = -2983.020443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08787 -38.66995 -37.60918 -35.43991 -34.84627 -33.39034 -31.48098 -30.33841 -27.23087 -25.53457 -23.70855 -23.40326 -22.92878 -22.06520 -21.41318 -20.30267 -18.84411 -17.90593 -17.31568 -16.58333 -16.09749 -16.03053 -15.42389 -15.29243 -15.04365 -14.75029 -14.58879 -14.50810 -14.11670 -13.52492 -13.42619 -13.33502 -13.27389 -12.84144 -12.71958 -12.31148 -12.23919 -12.18360 -12.04566 -12.00445 -11.87913 -11.60527 -11.59498 -11.37282 -11.27386 -11.16873 -11.02196 -10.69036 -10.18718 -9.35132 -8.43585 -6.15067 1.18430 1.30424 1.46156 1.98448 2.40149 2.69886 2.96381 3.25467 3.74822 3.83748 3.94492 4.04410 4.10058 4.19349 4.23330 4.29280 4.33838 4.37040 4.51886 4.54622 4.68734 4.73916 4.80049 4.82802 4.88326 4.90963 4.93446 5.02053 5.04353 5.14306 5.19358 5.22066 5.25737 5.30219 5.32954 5.41779 5.45726 5.54420 5.59257 5.64674 5.70635 5.87444 6.79410 6.95233 7.39218 7.95481 8.65204 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.007810 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.823104 B = 3584.228141 C = 4746.296286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C -0.109 4.109 4 C -0.132 4.132 5 C -0.067 4.067 6 H 0.051 0.949 7 C -0.110 4.110 8 C -0.154 4.154 9 C -0.122 4.122 10 C 0.446 3.554 11 O -0.583 6.583 12 N -0.459 5.459 13 C -0.337 4.337 14 H 0.067 0.933 15 C 0.042 3.958 16 N -0.915 5.915 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.318 1.318 20 H -0.265 1.265 21 C 0.046 3.954 22 C -0.171 4.171 23 C -0.186 4.186 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.269 0.731 41 H 0.154 0.846 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 4.761 18.665 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.146 4.146 4 C -0.169 4.169 5 C -0.086 4.086 6 H 0.069 0.931 7 C -0.147 4.147 8 C -0.211 4.211 9 C -0.162 4.162 10 C 0.239 3.761 11 O -0.468 6.468 12 N -0.181 5.181 13 C -0.464 4.464 14 H 0.084 0.916 15 C -0.162 4.162 16 N -0.553 5.553 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.249 1.249 20 H -0.189 1.189 21 C -0.058 4.058 22 C -0.209 4.209 23 C -0.225 4.225 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.171 0.829 42 H 0.090 0.910 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.673 4.581 18.088 19.502 hybrid contribution -0.134 -0.962 -0.963 1.367 sum -5.807 3.619 17.125 18.442 Atomic orbital electron populations 1.21735 0.94311 1.02068 1.02183 1.21586 0.97190 0.96997 1.01098 1.21567 0.94410 0.96720 1.01951 1.21858 0.96715 0.97216 1.01140 1.20900 0.92973 0.95881 0.98855 0.93055 1.21570 1.01825 0.95812 0.95516 1.21847 1.01731 0.95649 1.01917 1.21786 0.98087 1.03448 0.92863 1.21480 0.82537 0.80667 0.91446 1.90490 1.49851 1.54645 1.51807 1.43429 1.04815 1.58338 1.11482 1.18625 1.15617 1.18648 0.93477 0.91558 1.25921 0.97024 0.97506 0.95699 1.69852 1.42198 1.32604 1.10638 0.85667 0.81392 0.74674 0.79175 1.19003 1.24859 1.18928 1.22244 0.87425 1.01029 0.95141 1.23154 0.94608 1.03034 1.00065 1.23308 1.04633 0.94279 1.00277 0.93383 0.92166 0.91126 0.94996 0.91131 0.93920 0.89445 0.91572 0.94477 0.90861 0.90568 0.92274 0.93741 0.91120 0.87025 0.88265 0.92153 0.82904 0.90986 0.85248 0.84935 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.13 -3.52 5.93 30.59 0.18 -3.33 16 3 C -0.11 -3.07 4.98 30.59 0.15 -2.92 16 4 C -0.13 -4.39 4.49 30.59 0.14 -4.26 16 5 C -0.07 -2.04 1.50 -10.79 -0.02 -2.06 16 6 H 0.05 1.85 7.79 -2.39 -0.02 1.83 16 7 C -0.11 -2.29 5.27 30.59 0.16 -2.12 16 8 C -0.15 -2.86 9.70 71.98 0.70 -2.16 16 9 C -0.12 -3.92 3.61 29.85 0.11 -3.81 16 10 C 0.45 20.70 5.48 87.66 0.48 21.18 16 11 O -0.58 -32.44 10.11 -3.06 -0.03 -32.47 16 12 N -0.46 -21.87 2.51 -613.16 -1.54 -23.41 16 13 C -0.34 -19.60 8.68 84.04 0.73 -18.87 16 14 H 0.07 4.13 6.98 -2.91 -0.02 4.11 16 15 C 0.04 2.59 4.82 84.93 0.41 3.00 16 16 N -0.91 -59.70 13.96 21.66 0.30 -59.40 16 17 Si 0.96 52.73 23.66 68.60 1.62 54.35 16 18 H -0.26 -15.06 5.28 99.48 0.52 -14.54 16 19 H -0.32 -17.37 7.11 99.48 0.71 -16.66 16 20 H -0.26 -13.55 7.10 99.48 0.71 -12.84 16 21 C 0.05 1.60 5.77 44.99 0.26 1.85 16 22 C -0.17 -5.56 9.81 30.62 0.30 -5.26 16 23 C -0.19 -5.87 10.35 30.61 0.32 -5.55 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 27 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.09 1.93 6.46 -2.39 -0.02 1.91 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.61 3.83 -2.39 -0.01 1.60 16 33 H 0.07 1.40 6.35 -2.39 -0.02 1.38 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.07 6.37 -2.39 -0.02 1.05 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 2.95 5.96 -2.39 -0.01 2.94 16 39 H 0.10 2.78 7.92 -2.39 -0.02 2.76 16 40 H 0.27 16.73 8.31 -92.71 -0.77 15.96 16 41 H 0.15 3.96 7.11 -2.39 -0.02 3.94 16 42 H 0.07 2.91 6.50 -2.39 -0.02 2.90 16 43 H 0.13 3.08 8.14 -2.38 -0.02 3.06 16 44 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 45 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -76.13 339.46 5.74 -70.39 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.76 Total: 17.25 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 4.63 Total: -26.71 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.24 Total: -82.81 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.03 Total: -32.47 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 1.62 Total: 54.35 kcal Total: -76.13 5.74 -70.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343658195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.811 kcal (2) G-P(sol) polarization free energy of solvation -76.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds