Wall clock time and date at job start Mon Mar 30 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 C 1.53000 * 109.47169 * 184.81832 * 3 2 1 5 5 H 1.09009 * 109.46891 * 301.58024 * 4 3 2 6 6 C 1.53003 * 109.47300 * 181.58249 * 4 3 2 7 7 C 1.53005 * 109.46998 * 68.53823 * 6 4 3 8 8 C 1.54267 * 110.03056 * 288.61584 * 7 6 4 9 9 C 1.54888 * 104.19443 * 217.10953 * 8 7 6 10 10 C 1.54892 * 102.75012 * 37.93973 * 9 8 7 11 11 C 1.53877 * 110.02732 * 171.45191 * 7 6 4 12 12 C 1.50698 * 109.47115 * 61.58049 * 4 3 2 13 13 O 1.21293 * 119.99657 * 30.71076 * 12 4 3 14 14 N 1.34775 * 119.99915 * 210.71372 * 12 4 3 15 15 C 1.46498 * 120.00168 * 4.23872 * 14 12 4 16 16 C 1.37104 * 119.99882 * 184.23538 * 14 12 4 17 17 H 1.08004 * 119.99482 * 6.46237 * 16 14 12 18 18 C 1.38948 * 120.00137 * 186.73682 * 16 14 12 19 19 N 1.31412 * 119.99793 * 354.45888 * 18 16 14 20 20 Si 1.86795 * 120.00037 * 174.45911 * 18 16 14 21 21 H 1.48495 * 109.47227 * 94.99878 * 20 18 16 22 22 H 1.48506 * 109.46948 * 214.99819 * 20 18 16 23 23 H 1.48495 * 109.47242 * 334.99461 * 20 18 16 24 24 H 1.09002 * 109.47421 * 300.00015 * 1 2 3 25 25 H 1.09001 * 109.47073 * 59.99877 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46897 * 240.00302 * 2 1 3 28 28 H 1.09001 * 109.47073 * 120.00123 * 2 1 3 29 29 H 1.09010 * 109.46979 * 64.82319 * 3 2 1 30 30 H 1.08993 * 109.47564 * 304.82059 * 3 2 1 31 31 H 1.09000 * 109.47111 * 188.54063 * 6 4 3 32 32 H 1.09004 * 109.46658 * 308.53981 * 6 4 3 33 33 H 1.08999 * 110.01714 * 50.05746 * 7 6 4 34 34 H 1.08996 * 110.48929 * 335.78468 * 8 7 6 35 35 H 1.08996 * 110.48743 * 98.42824 * 8 7 6 36 36 H 1.09002 * 110.75304 * 279.63178 * 9 8 7 37 37 H 1.08994 * 110.91731 * 156.33555 * 9 8 7 38 38 H 1.09001 * 110.48937 * 203.38219 * 10 9 8 39 39 H 1.09005 * 110.48088 * 80.73890 * 10 9 8 40 40 H 1.09000 * 110.02794 * 238.56471 * 11 7 6 41 41 H 1.08994 * 110.03258 * 359.94737 * 11 7 6 42 42 H 1.09007 * 109.46727 * 234.74136 * 15 14 12 43 43 H 1.09002 * 109.47008 * 354.73651 * 15 14 12 44 44 H 1.08996 * 109.47186 * 114.74060 * 15 14 12 45 45 H 0.97001 * 119.99691 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4443 -0.1212 5 1 3.9961 0.8821 0.7075 6 6 4.0783 2.8851 -0.0815 7 6 3.8601 3.4659 1.3172 8 6 2.3571 3.7184 1.5559 9 6 2.3183 5.0304 2.3781 10 6 3.4573 5.8659 1.7426 11 6 4.5596 4.8313 1.4358 12 6 3.9662 0.8039 -1.4250 13 8 3.2380 0.8882 -2.3913 14 7 5.1341 0.1375 -1.5174 15 6 5.9697 -0.0443 -0.3279 16 6 5.5399 -0.3704 -2.7245 17 1 4.9785 -0.1482 -3.6200 18 6 6.6702 -1.1755 -2.7948 19 7 7.4118 -1.3617 -1.7260 20 14 7.1355 -1.9932 -4.4085 21 1 8.1263 -1.1492 -5.1235 22 1 7.7275 -3.3273 -4.1348 23 1 5.9226 -2.1532 -5.2502 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7489 1.9308 0.9301 30 1 1.6079 1.9807 -0.8436 31 1 5.1421 2.8986 -0.3187 32 1 3.5354 3.4843 -0.8125 33 1 4.2486 2.7805 2.0705 34 1 1.8365 3.8474 0.6070 35 1 1.9181 2.8987 2.1245 36 1 2.5248 4.8332 3.4301 37 1 1.3587 5.5341 2.2622 38 1 3.8212 6.6134 2.4476 39 1 3.1143 6.3417 0.8238 40 1 5.2869 4.8089 2.2474 41 1 5.0552 5.0797 0.4974 42 1 6.9725 0.3340 -0.5272 43 1 5.5348 0.5024 0.5087 44 1 6.0239 -1.1044 -0.0805 45 1 8.2006 -1.9241 -1.7751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354483793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:41 Heat of formation + Delta-G solvation = -52.321538 kcal Electronic energy + Delta-G solvation = -21784.536762 eV Core-core repulsion = 18801.397344 eV Total energy + Delta-G solvation = -2983.139417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.42957 -37.90658 -35.23038 -34.22500 -32.37107 -31.30214 -28.98443 -28.24763 -26.34529 -25.43998 -24.26418 -21.92465 -21.41566 -20.16425 -19.41607 -18.10959 -16.89232 -16.53591 -15.66156 -14.98872 -14.54745 -14.33790 -14.09699 -13.78808 -13.61199 -13.24048 -12.90471 -12.68194 -12.41070 -12.26443 -11.81882 -11.63957 -11.39884 -11.16946 -11.09135 -11.00131 -10.94551 -10.82462 -10.64535 -10.52359 -10.51007 -10.33291 -10.25953 -10.21605 -9.84915 -9.79820 -9.75191 -8.95998 -8.14406 -7.76196 -6.16931 -3.73252 3.18593 3.27256 3.34493 3.99220 4.17063 4.66579 4.71509 4.77930 5.02973 5.18221 5.25530 5.44214 5.45963 5.48659 5.54503 5.64073 5.70065 5.72470 5.75449 5.82535 5.87610 5.92747 5.98947 6.06995 6.10771 6.13993 6.21747 6.25984 6.31127 6.37087 6.44466 6.47015 6.51892 6.55232 6.66764 6.72836 6.91318 6.93197 7.17484 7.48146 7.62043 8.16156 8.57993 9.28250 9.55805 10.10961 10.77160 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020457 B = 0.005444 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.412952 B = 5141.893173 C = 6019.524794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.101 4.101 5 H 0.080 0.920 6 C -0.096 4.096 7 C -0.089 4.089 8 C -0.121 4.121 9 C -0.129 4.129 10 C -0.124 4.124 11 C -0.122 4.122 12 C 0.448 3.552 13 O -0.596 6.596 14 N -0.452 5.452 15 C 0.114 3.886 16 C -0.296 4.296 17 H 0.102 0.898 18 C 0.024 3.976 19 N -0.891 5.891 20 Si 0.927 3.073 21 H -0.279 1.279 22 H -0.283 1.283 23 H -0.270 1.270 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.061 0.939 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 8.678 9.973 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.122 4.122 5 H 0.098 0.902 6 C -0.135 4.135 7 C -0.108 4.108 8 C -0.158 4.158 9 C -0.166 4.166 10 C -0.162 4.162 11 C -0.160 4.160 12 C 0.237 3.763 13 O -0.482 6.482 14 N -0.170 5.170 15 C -0.029 4.029 16 C -0.424 4.424 17 H 0.119 0.881 18 C -0.176 4.176 19 N -0.533 5.533 20 Si 0.754 3.246 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.195 1.195 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.621 8.578 9.524 14.427 hybrid contribution 0.616 -0.606 -0.674 1.096 sum -6.005 7.972 8.850 13.340 Atomic orbital electron populations 1.21715 0.96620 1.00827 1.01078 1.21551 0.95090 0.97702 1.02163 1.21916 0.93841 0.96935 1.02346 1.21285 0.96882 0.96403 0.97651 0.90216 1.21598 1.01277 0.94695 0.95886 1.21801 0.95176 0.96277 0.97498 1.22766 0.96482 0.96431 1.00158 1.22559 0.98227 0.96554 0.99273 1.22347 0.96038 0.97539 1.00244 1.22225 0.97664 0.94508 1.01554 1.19887 0.82533 0.84165 0.89758 1.90483 1.52866 1.65045 1.39758 1.43746 1.16981 1.47338 1.08965 1.21817 0.94991 1.01150 0.84965 1.19792 1.09358 1.26400 0.86893 0.88064 1.25285 0.96203 0.97333 0.98822 1.70172 1.16236 1.38965 1.27921 0.85885 0.78721 0.78498 0.81464 1.20553 1.20878 1.19450 0.93492 0.92887 0.93440 0.91058 0.93046 0.90533 0.91516 0.91794 0.91647 0.91114 0.90894 0.91165 0.91899 0.92037 0.92259 0.91841 0.92125 0.91649 0.91036 0.95641 0.92003 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.13 -2.16 5.76 -26.73 -0.15 -2.31 16 3 C -0.11 -1.86 3.31 -26.73 -0.09 -1.95 16 4 C -0.10 -1.86 1.49 -91.77 -0.14 -1.99 16 5 H 0.08 1.42 5.82 -51.92 -0.30 1.11 16 6 C -0.10 -1.57 4.01 -26.73 -0.11 -1.67 16 7 C -0.09 -1.14 2.90 -89.50 -0.26 -1.40 16 8 C -0.12 -1.39 4.31 -25.07 -0.11 -1.50 16 9 C -0.13 -1.27 6.91 -24.74 -0.17 -1.44 16 10 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 11 C -0.12 -1.40 6.45 -25.61 -0.17 -1.57 16 12 C 0.45 10.92 5.66 -10.99 -0.06 10.86 16 13 O -0.60 -16.53 15.14 5.55 0.08 -16.44 16 14 N -0.45 -11.79 3.03 -122.19 -0.37 -12.16 16 15 C 0.11 2.65 8.72 59.85 0.52 3.17 16 16 C -0.30 -8.43 9.55 -14.93 -0.14 -8.57 16 17 H 0.10 3.03 7.20 -52.48 -0.38 2.65 16 18 C 0.02 0.66 5.46 -17.47 -0.10 0.56 16 19 N -0.89 -23.82 9.46 55.50 0.52 -23.30 16 20 Si 0.93 21.26 29.56 -169.99 -5.02 16.24 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.49 6.68 -51.93 -0.35 1.14 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.04 3.89 -51.92 -0.20 0.84 16 30 H 0.07 1.21 7.80 -51.93 -0.40 0.80 16 31 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 32 H 0.06 1.11 7.89 -51.93 -0.41 0.70 16 33 H 0.07 0.89 8.07 -51.93 -0.42 0.48 16 34 H 0.07 0.90 6.84 -51.93 -0.36 0.54 16 35 H 0.07 0.77 6.54 -51.93 -0.34 0.43 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.79 7.66 -51.93 -0.40 0.40 16 42 H 0.07 1.76 6.96 -51.92 -0.36 1.40 16 43 H 0.03 0.50 5.24 -51.93 -0.27 0.22 16 44 H 0.06 1.52 7.14 -51.93 -0.37 1.15 16 45 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -29.98 337.18 -8.40 -38.37 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.92 Total: 3.13 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.77 Total: -10.92 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.16 Total: -35.46 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.08 Total: -16.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.98 -8.40 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354483793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.948 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds