Wall clock time and date at job start Mon Mar 30 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47459 * 2 1 4 4 C 1.53002 * 109.47401 * 176.21392 * 3 2 1 5 5 H 1.09003 * 109.46856 * 174.76567 * 4 3 2 6 6 C 1.52999 * 109.46782 * 294.76364 * 4 3 2 7 7 C 1.52998 * 109.47241 * 295.91074 * 6 4 3 8 8 C 1.54259 * 110.03222 * 291.61664 * 7 6 4 9 9 C 1.54897 * 104.19558 * 217.10624 * 8 7 6 10 10 C 1.54889 * 102.74619 * 37.94370 * 9 8 7 11 11 C 1.53882 * 110.02826 * 174.44988 * 7 6 4 12 12 C 1.50699 * 109.46933 * 54.76296 * 4 3 2 13 13 O 1.21292 * 120.00279 * 257.15025 * 12 4 3 14 14 N 1.34783 * 119.99806 * 77.15398 * 12 4 3 15 15 C 1.46497 * 119.99625 * 184.83084 * 14 12 4 16 16 C 1.37092 * 119.99976 * 4.83707 * 14 12 4 17 17 H 1.08003 * 120.00402 * 3.82599 * 16 14 12 18 18 C 1.38956 * 120.00066 * 183.82556 * 16 14 12 19 19 N 1.31408 * 119.99565 * 7.07281 * 18 16 14 20 20 Si 1.86802 * 120.00066 * 187.06403 * 18 16 14 21 21 H 1.48498 * 109.46728 * 60.00372 * 20 18 16 22 22 H 1.48501 * 109.46871 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47083 * 300.00324 * 20 18 16 24 24 H 1.08995 * 109.47586 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 300.00349 * 1 2 3 26 26 H 1.09003 * 109.47034 * 59.99839 * 1 2 3 27 27 H 1.09000 * 109.47161 * 239.99651 * 2 1 3 28 28 H 1.09003 * 109.47034 * 120.00161 * 2 1 3 29 29 H 1.08997 * 109.47446 * 56.20751 * 3 2 1 30 30 H 1.09005 * 109.47252 * 296.21209 * 3 2 1 31 31 H 1.09003 * 109.47003 * 55.91490 * 6 4 3 32 32 H 1.09007 * 109.46728 * 175.90954 * 6 4 3 33 33 H 1.08993 * 110.01870 * 53.06359 * 7 6 4 34 34 H 1.09001 * 110.49069 * 335.77923 * 8 7 6 35 35 H 1.08999 * 110.49027 * 98.42873 * 8 7 6 36 36 H 1.08999 * 110.75469 * 279.62684 * 9 8 7 37 37 H 1.09003 * 110.91244 * 156.33325 * 9 8 7 38 38 H 1.08999 * 110.48038 * 203.37691 * 10 9 8 39 39 H 1.08998 * 110.59905 * 80.79542 * 10 9 8 40 40 H 1.08999 * 110.03236 * 238.56499 * 11 7 6 41 41 H 1.08993 * 110.03341 * 359.95398 * 11 7 6 42 42 H 1.08997 * 109.47266 * 354.19783 * 15 14 12 43 43 H 1.09003 * 109.46608 * 114.19682 * 15 14 12 44 44 H 1.08999 * 109.47002 * 234.19369 * 15 14 12 45 45 H 0.96996 * 119.99602 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5671 1.4434 0.0952 5 1 3.9362 2.4648 0.0018 6 6 3.9941 0.8685 1.4473 7 6 3.4983 1.7826 2.5696 8 6 4.2563 3.1255 2.5311 9 6 4.4456 3.4979 4.0227 10 6 4.7294 2.1263 4.6839 11 6 3.7992 1.1471 3.9385 12 6 4.1401 0.5987 -1.0134 13 8 4.5492 -0.5181 -0.7754 14 7 4.1980 1.0842 -2.2694 15 6 4.6560 0.2270 -3.3656 16 6 3.8284 2.3801 -2.5211 17 1 3.5500 3.0305 -1.7050 18 6 3.8120 2.8570 -3.8262 19 7 4.0147 2.0328 -4.8294 20 14 3.5016 4.6696 -4.1544 21 1 4.5533 5.4801 -3.4895 22 1 3.5340 4.9201 -5.6178 23 1 2.1704 5.0491 -3.6170 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6224 1.9756 0.8540 30 1 1.7332 1.9363 -0.9220 31 1 3.5642 -0.1254 1.5715 32 1 5.0814 0.8017 1.4866 33 1 2.4271 1.9544 2.4652 34 1 5.2231 3.0041 2.0426 35 1 3.6627 3.8841 2.0209 36 1 3.5364 3.9416 4.4284 37 1 5.2929 4.1714 4.1511 38 1 4.4810 2.1557 5.7448 39 1 5.7725 1.8421 4.5450 40 1 2.8740 1.0115 4.4986 41 1 4.2975 0.1873 3.8031 42 1 5.0011 -0.7251 -2.9625 43 1 3.8325 0.0513 -4.0578 44 1 5.4750 0.7170 -3.8921 45 1 4.0028 2.3656 -5.7404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354483797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:43 Heat of formation + Delta-G solvation = -64.770052 kcal Electronic energy + Delta-G solvation = -21944.312234 eV Core-core repulsion = 18960.633008 eV Total energy + Delta-G solvation = -2983.679225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32816 -37.85468 -35.19388 -34.54272 -31.76540 -31.33507 -28.83243 -28.36911 -26.28039 -25.06492 -24.41107 -22.19371 -20.81678 -20.50860 -19.11220 -18.45705 -16.70718 -15.96365 -15.61383 -14.85971 -14.59891 -14.54240 -14.17624 -13.95578 -13.23995 -13.18265 -13.01958 -12.64285 -12.63955 -11.90220 -11.60699 -11.46124 -11.30984 -11.17024 -10.99282 -10.94112 -10.93111 -10.82476 -10.68839 -10.57395 -10.45148 -10.41190 -10.32257 -10.10616 -9.88937 -9.87207 -9.53090 -9.05943 -8.17201 -7.82755 -6.24162 -3.82863 3.11727 3.19259 3.20257 4.00364 4.08312 4.70771 4.81363 4.82045 5.03140 5.14170 5.43303 5.46729 5.54627 5.58124 5.64507 5.68906 5.76385 5.79407 5.82068 5.92191 5.99998 6.03206 6.12499 6.19326 6.20516 6.28831 6.31967 6.41704 6.44083 6.47650 6.49353 6.54834 6.65748 6.82608 6.89019 6.93377 7.01305 7.10563 7.30791 7.43435 7.54392 7.81044 8.45117 9.12378 9.63238 10.02631 10.69560 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.006204 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.884742 B = 4511.962669 C = 5033.025292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.105 4.105 4 C -0.089 4.089 5 H 0.083 0.917 6 C -0.089 4.089 7 C -0.094 4.094 8 C -0.121 4.121 9 C -0.125 4.125 10 C -0.124 4.124 11 C -0.121 4.121 12 C 0.458 3.542 13 O -0.616 6.616 14 N -0.447 5.447 15 C 0.123 3.877 16 C -0.325 4.325 17 H 0.100 0.900 18 C 0.032 3.968 19 N -0.877 5.877 20 Si 0.922 3.078 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 2.512 12.162 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.143 4.143 4 C -0.111 4.111 5 H 0.101 0.899 6 C -0.126 4.126 7 C -0.112 4.112 8 C -0.158 4.158 9 C -0.163 4.163 10 C -0.162 4.162 11 C -0.158 4.158 12 C 0.246 3.754 13 O -0.504 6.504 14 N -0.164 5.164 15 C -0.020 4.020 16 C -0.452 4.452 17 H 0.118 0.882 18 C -0.172 4.172 19 N -0.517 5.517 20 Si 0.749 3.251 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.198 1.198 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.844 1.986 11.989 12.481 hybrid contribution -0.166 1.079 -0.499 1.200 sum -3.010 3.065 11.490 12.267 Atomic orbital electron populations 1.21763 0.96845 1.00769 1.01168 1.21529 0.94519 0.97391 1.02476 1.21500 0.93830 0.96847 1.02090 1.21042 0.96174 1.00107 0.93727 0.89925 1.21503 1.00595 0.98453 0.92097 1.21876 1.00096 0.94927 0.94327 1.22471 1.00747 0.96864 0.95747 1.22495 1.00857 0.96762 0.96171 1.22346 0.99746 0.95398 0.98680 1.22212 0.99040 0.98841 0.95731 1.19927 0.83936 0.87546 0.83957 1.90495 1.54853 1.21767 1.83274 1.43704 1.55368 1.11477 1.05847 1.21477 1.00485 0.91664 0.88359 1.19701 1.44921 0.86974 0.93647 0.88217 1.25269 0.96838 0.99721 0.95342 1.70201 1.48267 1.33930 0.99324 0.86072 0.79002 0.82500 0.77568 1.19911 1.20846 1.19838 0.93465 0.93403 0.92948 0.91723 0.92171 0.92308 0.90810 0.91379 0.92266 0.90889 0.91364 0.91769 0.91941 0.92083 0.92367 0.91864 0.92383 0.91727 0.94872 0.91644 0.92389 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.14 5.37 -26.73 -0.14 -2.28 16 3 C -0.10 -1.85 4.69 -26.73 -0.13 -1.98 16 4 C -0.09 -1.73 1.59 -91.77 -0.15 -1.88 16 5 H 0.08 1.61 5.93 -51.93 -0.31 1.31 16 6 C -0.09 -1.52 3.03 -26.73 -0.08 -1.60 16 7 C -0.09 -1.29 2.80 -89.50 -0.25 -1.54 16 8 C -0.12 -1.58 5.50 -25.07 -0.14 -1.72 16 9 C -0.13 -1.39 6.91 -24.73 -0.17 -1.56 16 10 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 11 C -0.12 -1.46 6.46 -25.61 -0.17 -1.63 16 12 C 0.46 11.08 5.40 -10.98 -0.06 11.02 16 13 O -0.62 -16.34 15.39 5.55 0.09 -16.26 16 14 N -0.45 -11.51 3.03 -122.19 -0.37 -11.88 16 15 C 0.12 3.18 8.87 59.85 0.53 3.71 16 16 C -0.32 -8.20 8.58 -14.93 -0.13 -8.33 16 17 H 0.10 2.36 5.59 -52.48 -0.29 2.06 16 18 C 0.03 0.80 5.41 -17.47 -0.09 0.70 16 19 N -0.88 -23.06 9.54 55.50 0.53 -22.53 16 20 Si 0.92 19.53 29.56 -169.99 -5.02 14.51 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.35 7.19 -51.93 -0.37 0.98 16 28 H 0.06 1.03 6.32 -51.93 -0.33 0.70 16 29 H 0.06 0.89 6.18 -51.93 -0.32 0.57 16 30 H 0.07 1.44 7.12 -51.93 -0.37 1.07 16 31 H 0.07 1.23 6.22 -51.93 -0.32 0.90 16 32 H 0.06 1.09 7.99 -51.93 -0.41 0.67 16 33 H 0.07 0.98 6.17 -51.93 -0.32 0.66 16 34 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.81 7.67 -51.93 -0.40 0.42 16 42 H 0.03 0.84 6.91 -51.93 -0.36 0.48 16 43 H 0.07 1.74 6.99 -51.93 -0.36 1.37 16 44 H 0.06 1.53 7.14 -51.93 -0.37 1.16 16 45 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -27.88 336.96 -8.36 -36.24 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.89 Total: 5.25 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.77 Total: -10.41 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.16 Total: -34.41 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.26 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.88 -8.36 -36.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354483797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.531 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds