Wall clock time and date at job start Mon Mar 30 2020 01:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47459 * 2 1 4 4 C 1.53002 * 109.47401 * 176.21392 * 3 2 1 5 5 H 1.09003 * 109.46856 * 174.76567 * 4 3 2 6 6 C 1.52999 * 109.46782 * 294.76364 * 4 3 2 7 7 C 1.52998 * 109.47241 * 295.91074 * 6 4 3 8 8 C 1.54259 * 110.03222 * 291.61664 * 7 6 4 9 9 C 1.54897 * 104.19558 * 217.10624 * 8 7 6 10 10 C 1.54889 * 102.74619 * 37.94370 * 9 8 7 11 11 C 1.53882 * 110.02826 * 174.44988 * 7 6 4 12 12 C 1.50699 * 109.46933 * 54.76296 * 4 3 2 13 13 O 1.21292 * 120.00279 * 257.15025 * 12 4 3 14 14 N 1.34783 * 119.99806 * 77.15398 * 12 4 3 15 15 C 1.46497 * 119.99625 * 184.83084 * 14 12 4 16 16 C 1.37092 * 119.99976 * 4.83707 * 14 12 4 17 17 H 1.08003 * 120.00402 * 3.82599 * 16 14 12 18 18 C 1.38956 * 120.00066 * 183.82556 * 16 14 12 19 19 N 1.31408 * 119.99565 * 7.07281 * 18 16 14 20 20 Si 1.86802 * 120.00066 * 187.06403 * 18 16 14 21 21 H 1.48498 * 109.46728 * 60.00372 * 20 18 16 22 22 H 1.48501 * 109.46871 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47083 * 300.00324 * 20 18 16 24 24 H 1.08995 * 109.47586 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 300.00349 * 1 2 3 26 26 H 1.09003 * 109.47034 * 59.99839 * 1 2 3 27 27 H 1.09000 * 109.47161 * 239.99651 * 2 1 3 28 28 H 1.09003 * 109.47034 * 120.00161 * 2 1 3 29 29 H 1.08997 * 109.47446 * 56.20751 * 3 2 1 30 30 H 1.09005 * 109.47252 * 296.21209 * 3 2 1 31 31 H 1.09003 * 109.47003 * 55.91490 * 6 4 3 32 32 H 1.09007 * 109.46728 * 175.90954 * 6 4 3 33 33 H 1.08993 * 110.01870 * 53.06359 * 7 6 4 34 34 H 1.09001 * 110.49069 * 335.77923 * 8 7 6 35 35 H 1.08999 * 110.49027 * 98.42873 * 8 7 6 36 36 H 1.08999 * 110.75469 * 279.62684 * 9 8 7 37 37 H 1.09003 * 110.91244 * 156.33325 * 9 8 7 38 38 H 1.08999 * 110.48038 * 203.37691 * 10 9 8 39 39 H 1.08998 * 110.59905 * 80.79542 * 10 9 8 40 40 H 1.08999 * 110.03236 * 238.56499 * 11 7 6 41 41 H 1.08993 * 110.03341 * 359.95398 * 11 7 6 42 42 H 1.08997 * 109.47266 * 354.19783 * 15 14 12 43 43 H 1.09003 * 109.46608 * 114.19682 * 15 14 12 44 44 H 1.08999 * 109.47002 * 234.19369 * 15 14 12 45 45 H 0.96996 * 119.99602 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5671 1.4434 0.0952 5 1 3.9362 2.4648 0.0018 6 6 3.9941 0.8685 1.4473 7 6 3.4983 1.7826 2.5696 8 6 4.2563 3.1255 2.5311 9 6 4.4456 3.4979 4.0227 10 6 4.7294 2.1263 4.6839 11 6 3.7992 1.1471 3.9385 12 6 4.1401 0.5987 -1.0134 13 8 4.5492 -0.5181 -0.7754 14 7 4.1980 1.0842 -2.2694 15 6 4.6560 0.2270 -3.3656 16 6 3.8284 2.3801 -2.5211 17 1 3.5500 3.0305 -1.7050 18 6 3.8120 2.8570 -3.8262 19 7 4.0147 2.0328 -4.8294 20 14 3.5016 4.6696 -4.1544 21 1 4.5533 5.4801 -3.4895 22 1 3.5340 4.9201 -5.6178 23 1 2.1704 5.0491 -3.6170 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6224 1.9756 0.8540 30 1 1.7332 1.9363 -0.9220 31 1 3.5642 -0.1254 1.5715 32 1 5.0814 0.8017 1.4866 33 1 2.4271 1.9544 2.4652 34 1 5.2231 3.0041 2.0426 35 1 3.6627 3.8841 2.0209 36 1 3.5364 3.9416 4.4284 37 1 5.2929 4.1714 4.1511 38 1 4.4810 2.1557 5.7448 39 1 5.7725 1.8421 4.5450 40 1 2.8740 1.0115 4.4986 41 1 4.2975 0.1873 3.8031 42 1 5.0011 -0.7251 -2.9625 43 1 3.8325 0.0513 -4.0578 44 1 5.4750 0.7170 -3.8921 45 1 4.0028 2.3656 -5.7404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354483797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:42 Heat of formation + Delta-G solvation = -77.856983 kcal Electronic energy + Delta-G solvation = -21944.879726 eV Core-core repulsion = 18960.633008 eV Total energy + Delta-G solvation = -2984.246717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.00878 -39.17118 -36.87162 -36.32731 -33.33115 -33.05885 -30.09173 -29.41408 -28.18442 -26.59366 -26.09413 -23.65453 -22.29821 -21.44855 -20.72436 -19.90789 -18.49165 -17.79858 -16.86761 -16.31797 -16.14684 -15.94839 -15.82204 -15.57855 -14.85597 -14.53020 -14.23567 -14.10371 -13.96671 -13.48668 -13.23694 -13.17388 -12.89201 -12.69841 -12.56389 -12.51038 -12.29546 -12.12759 -12.01706 -11.88672 -11.82117 -11.70342 -11.45381 -11.40861 -11.29924 -11.16107 -11.04744 -10.87527 -10.11952 -9.87196 -8.18882 -5.84662 1.44483 1.46682 1.56575 2.09520 2.29884 3.04011 3.19941 3.75366 3.84433 3.88720 4.06219 4.11153 4.18856 4.36285 4.41928 4.53684 4.64277 4.65956 4.71806 4.78293 4.84638 4.85510 4.90267 4.96181 5.00164 5.03401 5.08506 5.12829 5.15270 5.17617 5.24178 5.31012 5.34196 5.39947 5.41697 5.45444 5.49309 5.54775 5.57723 5.59535 5.70114 5.82210 6.45345 7.14869 7.65853 8.05022 8.76550 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.006204 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.884742 B = 4511.962669 C = 5033.025292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.098 4.098 4 C -0.082 4.082 5 H 0.084 0.916 6 C -0.078 4.078 7 C -0.088 4.088 8 C -0.125 4.125 9 C -0.119 4.119 10 C -0.123 4.123 11 C -0.120 4.120 12 C 0.449 3.551 13 O -0.646 6.646 14 N -0.464 5.464 15 C 0.139 3.861 16 C -0.341 4.341 17 H 0.115 0.885 18 C -0.015 4.015 19 N -0.908 5.908 20 Si 0.992 3.008 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.260 1.260 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 4.622 14.356 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C -0.135 4.135 4 C -0.103 4.103 5 H 0.102 0.898 6 C -0.116 4.116 7 C -0.106 4.106 8 C -0.163 4.163 9 C -0.157 4.157 10 C -0.161 4.161 11 C -0.158 4.158 12 C 0.240 3.760 13 O -0.535 6.535 14 N -0.181 5.181 15 C -0.005 4.005 16 C -0.468 4.468 17 H 0.133 0.867 18 C -0.215 4.215 19 N -0.549 5.549 20 Si 0.815 3.185 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.185 1.185 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.329 4.096 14.200 15.399 hybrid contribution 0.341 0.322 -1.206 1.294 sum -3.988 4.418 12.994 14.292 Atomic orbital electron populations 1.21711 0.94149 1.01820 1.02205 1.21471 0.96887 0.96805 1.00434 1.21482 0.92246 0.97124 1.02671 1.21053 0.97346 0.99021 0.92839 0.89810 1.21414 0.99256 0.98727 0.92231 1.21838 1.00525 0.94500 0.93720 1.22485 0.99757 0.96583 0.97443 1.22480 1.01924 0.96959 0.94317 1.22354 0.99117 0.94907 0.99681 1.22212 1.00105 0.98498 0.94987 1.20858 0.82973 0.87696 0.84506 1.90460 1.55916 1.23336 1.83832 1.43982 1.55841 1.11995 1.06266 1.21205 0.99473 0.91458 0.88360 1.20105 1.45347 0.86874 0.94509 0.86719 1.26206 0.96303 1.04100 0.94895 1.70325 1.49019 1.35853 0.99660 0.85001 0.79450 0.76924 0.77140 1.19142 1.21078 1.18462 0.92534 0.90714 0.93460 0.96184 0.91805 0.88682 0.92642 0.92540 0.94325 0.89774 0.93187 0.91354 0.90466 0.91336 0.90428 0.92528 0.90635 0.92821 0.95437 0.92957 0.93501 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.13 16 2 C -0.12 -4.10 5.37 30.59 0.16 -3.94 16 3 C -0.10 -3.33 4.69 30.59 0.14 -3.18 16 4 C -0.08 -3.16 1.59 -11.54 -0.02 -3.17 16 5 H 0.08 3.23 5.93 -2.39 -0.01 3.21 16 6 C -0.08 -2.66 3.03 30.59 0.09 -2.57 16 7 C -0.09 -2.21 2.80 -10.07 -0.03 -2.24 16 8 C -0.13 -3.01 5.50 31.67 0.17 -2.84 16 9 C -0.12 -2.27 6.91 31.89 0.22 -2.05 16 10 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 11 C -0.12 -2.62 6.46 31.32 0.20 -2.42 16 12 C 0.45 22.38 5.40 87.66 0.47 22.86 16 13 O -0.65 -35.63 15.39 -3.07 -0.05 -35.67 16 14 N -0.46 -24.62 3.03 -658.89 -1.99 -26.62 16 15 C 0.14 7.49 8.87 127.77 1.13 8.62 16 16 C -0.34 -17.37 8.58 84.04 0.72 -16.65 16 17 H 0.12 5.35 5.59 -2.91 -0.02 5.33 16 18 C -0.01 -0.75 5.41 84.93 0.46 -0.29 16 19 N -0.91 -48.64 9.54 21.66 0.21 -48.43 16 20 Si 0.99 39.41 29.56 68.60 2.03 41.44 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.29 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.02 0.85 7.19 -2.39 -0.02 0.83 16 28 H 0.06 2.14 6.32 -2.39 -0.02 2.13 16 29 H 0.09 2.57 6.18 -2.39 -0.01 2.55 16 30 H 0.05 2.11 7.12 -2.38 -0.02 2.09 16 31 H 0.06 2.03 6.22 -2.39 -0.01 2.02 16 32 H 0.04 1.44 7.99 -2.38 -0.02 1.43 16 33 H 0.08 1.96 6.17 -2.39 -0.01 1.94 16 34 H 0.05 1.38 7.75 -2.39 -0.02 1.36 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 1.28 7.67 -2.39 -0.02 1.26 16 42 H 0.03 1.46 6.91 -2.39 -0.02 1.45 16 43 H 0.05 2.92 6.99 -2.39 -0.02 2.90 16 44 H 0.05 2.58 7.14 -2.39 -0.02 2.56 16 45 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -61.57 336.96 5.81 -55.76 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.95 Total: 26.64 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 4.67 Total: -13.12 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -1.79 Total: -75.05 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.05 Total: -35.67 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -61.57 5.81 -55.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354483797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.092 kcal (2) G-P(sol) polarization free energy of solvation -61.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds