Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47307 * 2 1 4 4 C 1.53004 * 109.47307 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99914 * 89.99978 * 5 4 3 7 7 O 1.21689 * 119.99390 * 185.31593 * 6 5 4 8 8 C 1.46368 * 120.00328 * 5.31794 * 6 5 4 9 9 H 1.08001 * 119.99768 * 343.99890 * 8 6 5 10 10 C 1.40042 * 120.00377 * 164.00231 * 8 6 5 11 11 N 1.30672 * 119.99794 * 340.86689 * 10 8 6 12 12 Si 1.86800 * 120.00455 * 160.86613 * 10 8 6 13 13 H 1.48490 * 109.47523 * 184.99060 * 12 10 8 14 14 H 1.48503 * 109.46995 * 304.99565 * 12 10 8 15 15 H 1.48508 * 109.46758 * 64.99004 * 12 10 8 16 16 C 1.46505 * 119.99680 * 270.00056 * 5 4 3 17 17 H 1.08995 * 109.47243 * 353.64044 * 16 5 4 18 18 C 1.52995 * 109.47179 * 113.64500 * 16 5 4 19 19 C 1.52994 * 109.47188 * 179.97438 * 18 16 5 20 20 C 1.53001 * 109.47027 * 299.99657 * 19 18 16 21 21 C 1.53003 * 109.47117 * 60.00137 * 20 19 18 22 22 H 1.08996 * 109.46856 * 59.99643 * 21 20 19 23 23 C 1.53001 * 109.47117 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.46690 * 233.64316 * 16 5 4 25 25 H 1.08998 * 109.46892 * 60.00279 * 1 2 3 26 26 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47020 * 299.99877 * 1 2 3 28 28 H 1.09003 * 109.47020 * 240.00123 * 2 1 3 29 29 H 1.09001 * 109.46770 * 120.00475 * 2 1 3 30 30 H 1.09002 * 109.47455 * 59.99862 * 3 2 1 31 31 H 1.09005 * 109.47379 * 300.00425 * 3 2 1 32 32 H 1.09003 * 109.47020 * 60.00123 * 4 3 2 33 33 H 1.08998 * 109.46892 * 299.99721 * 4 3 2 34 34 H 0.97001 * 119.99923 * 354.04115 * 11 10 8 35 35 H 1.09009 * 109.46868 * 299.99575 * 18 16 5 36 36 H 1.08995 * 109.47405 * 59.99644 * 18 16 5 37 37 H 1.09005 * 109.47279 * 59.99532 * 19 18 16 38 38 H 1.09000 * 109.47095 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47306 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.47067 * 299.99989 * 20 19 18 41 41 H 1.09005 * 109.46989 * 59.99915 * 23 21 20 42 42 H 1.09000 * 109.46945 * 180.02562 * 23 21 20 43 43 H 1.08994 * 109.47243 * 299.99776 * 23 21 20 44 44 H 1.09005 * 109.46978 * 299.99906 * 24 16 5 45 45 H 1.09000 * 109.47247 * 60.00232 * 24 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2825 3.4586 1.1687 7 8 4.5948 4.6348 1.1714 8 6 4.1504 2.7336 2.4334 9 1 3.6332 1.7859 2.4609 10 6 4.6945 3.2688 3.6075 11 7 5.6190 4.1897 3.5386 12 14 4.0988 2.6662 5.2723 13 1 4.7376 3.4680 6.3466 14 1 2.6236 2.8154 5.3538 15 1 4.4617 1.2360 5.4398 16 6 4.3031 3.5146 -1.2672 17 1 4.1765 2.8143 -2.0928 18 6 3.3094 4.6679 -1.4198 19 6 3.5653 5.3898 -2.7442 20 6 4.9924 5.9413 -2.7569 21 6 5.9862 4.7881 -2.6044 22 1 5.8598 4.0880 -3.4301 23 6 7.4133 5.3395 -2.6177 24 6 5.7302 4.0660 -1.2805 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.9901 4.4410 2.6783 35 1 2.2926 4.2750 -1.4103 36 1 3.4360 5.3682 -0.5942 37 1 3.4390 4.6897 -3.5700 38 1 2.8570 6.2112 -2.8530 39 1 5.1746 6.4561 -3.7003 40 1 5.1187 6.6414 -1.9311 41 1 7.5400 6.0399 -1.7921 42 1 8.1213 4.5178 -2.5095 43 1 7.5954 5.8535 -3.5614 44 1 5.8568 4.7664 -0.4549 45 1 6.4382 3.2444 -1.1719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359255051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = -90.058885 kcal Electronic energy + Delta-G solvation = -21996.410017 eV Core-core repulsion = 19011.634186 eV Total energy + Delta-G solvation = -2984.775831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.21183 -36.94635 -35.40234 -33.43021 -32.29497 -31.81975 -29.81900 -27.60093 -25.99308 -25.52543 -22.98468 -22.17351 -21.17506 -20.60546 -19.42075 -19.02294 -16.78151 -15.61964 -15.05415 -14.75416 -14.42662 -14.03312 -13.94201 -13.80796 -13.46484 -13.16039 -12.83480 -12.42648 -12.33625 -12.28197 -12.10291 -11.90076 -11.39222 -11.28948 -11.16082 -10.92611 -10.88800 -10.81957 -10.68628 -10.59032 -10.33891 -10.21926 -10.18864 -10.08101 -9.97506 -9.62839 -9.53547 -8.67374 -7.58026 -7.28107 -6.64114 -4.62204 3.28460 3.33843 3.52357 4.18512 4.45442 4.51615 5.06985 5.17088 5.21495 5.25331 5.33478 5.42598 5.54004 5.59265 5.66177 5.70720 5.78997 5.86471 5.97061 6.00171 6.02014 6.06309 6.06741 6.08814 6.14765 6.18922 6.20136 6.30284 6.34506 6.37409 6.44609 6.54780 6.60641 6.69165 6.74477 6.83542 6.86774 7.06746 7.17710 7.61165 7.97395 8.19761 8.45317 8.94486 9.49935 10.45852 10.63157 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.007777 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.435554 B = 3599.678113 C = 5239.527043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.129 3.871 5 N -0.638 5.638 6 C 0.562 3.438 7 O -0.615 6.615 8 C -0.616 4.616 9 H 0.067 0.933 10 C 0.053 3.947 11 N -0.808 5.808 12 Si 1.067 2.933 13 H -0.278 1.278 14 H -0.280 1.280 15 H -0.282 1.282 16 C 0.168 3.832 17 H 0.056 0.944 18 C -0.131 4.131 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.086 4.086 22 H 0.058 0.942 23 C -0.144 4.144 24 C -0.130 4.130 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.305 0.695 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.098 0.902 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -4.433 -10.291 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.174 4.174 4 C 0.004 3.996 5 N -0.371 5.371 6 C 0.371 3.629 7 O -0.504 6.504 8 C -0.652 4.652 9 H 0.085 0.915 10 C -0.169 4.169 11 N -0.437 5.437 12 Si 0.892 3.108 13 H -0.203 1.203 14 H -0.206 1.206 15 H -0.208 1.208 16 C 0.063 3.937 17 H 0.074 0.926 18 C -0.170 4.170 19 C -0.151 4.151 20 C -0.149 4.149 21 C -0.106 4.106 22 H 0.077 0.923 23 C -0.201 4.201 24 C -0.168 4.168 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.116 0.884 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.314 -3.565 -8.704 9.973 hybrid contribution -0.334 -0.469 -1.812 1.901 sum -3.649 -4.034 -10.517 11.840 Atomic orbital electron populations 1.21755 0.96381 1.00880 1.01686 1.21463 0.95420 0.97467 1.01579 1.22065 0.97440 0.95750 1.02171 1.21230 0.92444 0.84594 1.01341 1.47984 1.70874 1.12996 1.05279 1.18213 0.76155 0.85960 0.82583 1.90427 1.55761 1.17165 1.87017 1.21867 1.41409 1.09066 0.92809 0.91455 1.26512 0.93129 0.93670 1.03622 1.70137 1.17669 1.22504 1.33402 0.83650 0.76621 0.76150 0.74346 1.20263 1.20587 1.20755 1.20561 0.94015 0.92747 0.86370 0.92574 1.21971 0.98183 0.99022 0.97803 1.21480 0.96484 0.99304 0.97825 1.21562 0.94596 0.97746 1.00959 1.21069 0.94522 0.96876 0.98087 0.92311 1.21796 0.96374 1.00824 1.01118 1.22051 0.96045 1.00741 0.97968 0.93178 0.93284 0.92710 0.92623 0.91926 0.91274 0.92984 0.93445 0.90043 0.88049 0.93266 0.89614 0.92933 0.92667 0.92945 0.91733 0.92554 0.93063 0.93361 0.88411 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.14 -2.26 5.54 -26.73 -0.15 -2.41 16 4 C 0.13 2.41 5.14 -4.04 -0.02 2.39 16 5 N -0.64 -14.10 2.42 -167.76 -0.41 -14.51 16 6 C 0.56 15.18 6.70 -12.99 -0.09 15.09 16 7 O -0.61 -18.20 10.83 5.20 0.06 -18.14 16 8 C -0.62 -16.98 8.53 -35.64 -0.30 -17.28 16 9 H 0.07 1.74 6.29 -52.49 -0.33 1.41 16 10 C 0.05 1.49 5.37 -17.37 -0.09 1.39 16 11 N -0.81 -24.24 13.23 55.55 0.73 -23.50 16 12 Si 1.07 23.58 29.98 -169.99 -5.10 18.48 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 15 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 16 C 0.17 3.26 2.55 -67.93 -0.17 3.08 16 17 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 18 C -0.13 -2.48 5.22 -26.74 -0.14 -2.62 16 19 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 20 C -0.11 -1.67 5.20 -26.73 -0.14 -1.81 16 21 C -0.09 -1.34 2.72 -90.64 -0.25 -1.59 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.14 -2.03 9.20 37.16 0.34 -1.69 16 24 C -0.13 -2.53 4.31 -26.76 -0.12 -2.64 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.78 7.87 -51.93 -0.41 0.37 16 33 H 0.08 1.64 6.11 -51.93 -0.32 1.32 16 34 H 0.30 9.57 6.47 -40.82 -0.26 9.30 16 35 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.09 1.96 6.46 -51.93 -0.34 1.62 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 2.31 5.90 -51.93 -0.31 2.00 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -30.39 345.29 -8.93 -39.31 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.35 Total: 6.32 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.07 Total: -13.17 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.33 Total: -38.01 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.06 Total: -18.14 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.10 Total: 18.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.39 -8.93 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359255051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.745 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds