Wall clock time and date at job start Mon Mar 30 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47307 * 2 1 4 4 C 1.53004 * 109.47307 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99914 * 89.99978 * 5 4 3 7 7 O 1.21689 * 119.99390 * 185.31593 * 6 5 4 8 8 C 1.46368 * 120.00328 * 5.31794 * 6 5 4 9 9 H 1.08001 * 119.99768 * 343.99890 * 8 6 5 10 10 C 1.40042 * 120.00377 * 164.00231 * 8 6 5 11 11 N 1.30672 * 119.99794 * 340.86689 * 10 8 6 12 12 Si 1.86800 * 120.00455 * 160.86613 * 10 8 6 13 13 H 1.48490 * 109.47523 * 184.99060 * 12 10 8 14 14 H 1.48503 * 109.46995 * 304.99565 * 12 10 8 15 15 H 1.48508 * 109.46758 * 64.99004 * 12 10 8 16 16 C 1.46505 * 119.99680 * 270.00056 * 5 4 3 17 17 H 1.08995 * 109.47243 * 353.64044 * 16 5 4 18 18 C 1.52995 * 109.47179 * 113.64500 * 16 5 4 19 19 C 1.52994 * 109.47188 * 179.97438 * 18 16 5 20 20 C 1.53001 * 109.47027 * 299.99657 * 19 18 16 21 21 C 1.53003 * 109.47117 * 60.00137 * 20 19 18 22 22 H 1.08996 * 109.46856 * 59.99643 * 21 20 19 23 23 C 1.53001 * 109.47117 * 179.97438 * 21 20 19 24 24 C 1.52997 * 109.46690 * 233.64316 * 16 5 4 25 25 H 1.08998 * 109.46892 * 60.00279 * 1 2 3 26 26 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47020 * 299.99877 * 1 2 3 28 28 H 1.09003 * 109.47020 * 240.00123 * 2 1 3 29 29 H 1.09001 * 109.46770 * 120.00475 * 2 1 3 30 30 H 1.09002 * 109.47455 * 59.99862 * 3 2 1 31 31 H 1.09005 * 109.47379 * 300.00425 * 3 2 1 32 32 H 1.09003 * 109.47020 * 60.00123 * 4 3 2 33 33 H 1.08998 * 109.46892 * 299.99721 * 4 3 2 34 34 H 0.97001 * 119.99923 * 354.04115 * 11 10 8 35 35 H 1.09009 * 109.46868 * 299.99575 * 18 16 5 36 36 H 1.08995 * 109.47405 * 59.99644 * 18 16 5 37 37 H 1.09005 * 109.47279 * 59.99532 * 19 18 16 38 38 H 1.09000 * 109.47095 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47306 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.47067 * 299.99989 * 20 19 18 41 41 H 1.09005 * 109.46989 * 59.99915 * 23 21 20 42 42 H 1.09000 * 109.46945 * 180.02562 * 23 21 20 43 43 H 1.08994 * 109.47243 * 299.99776 * 23 21 20 44 44 H 1.09005 * 109.46978 * 299.99906 * 24 16 5 45 45 H 1.09000 * 109.47247 * 60.00232 * 24 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2825 3.4586 1.1687 7 8 4.5948 4.6348 1.1714 8 6 4.1504 2.7336 2.4334 9 1 3.6332 1.7859 2.4609 10 6 4.6945 3.2688 3.6075 11 7 5.6190 4.1897 3.5386 12 14 4.0988 2.6662 5.2723 13 1 4.7376 3.4680 6.3466 14 1 2.6236 2.8154 5.3538 15 1 4.4617 1.2360 5.4398 16 6 4.3031 3.5146 -1.2672 17 1 4.1765 2.8143 -2.0928 18 6 3.3094 4.6679 -1.4198 19 6 3.5653 5.3898 -2.7442 20 6 4.9924 5.9413 -2.7569 21 6 5.9862 4.7881 -2.6044 22 1 5.8598 4.0880 -3.4301 23 6 7.4133 5.3395 -2.6177 24 6 5.7302 4.0660 -1.2805 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 5.9901 4.4410 2.6783 35 1 2.2926 4.2750 -1.4103 36 1 3.4360 5.3682 -0.5942 37 1 3.4390 4.6897 -3.5700 38 1 2.8570 6.2112 -2.8530 39 1 5.1746 6.4561 -3.7003 40 1 5.1187 6.6414 -1.9311 41 1 7.5400 6.0399 -1.7921 42 1 8.1213 4.5178 -2.5095 43 1 7.5954 5.8535 -3.5614 44 1 5.8568 4.7664 -0.4549 45 1 6.4382 3.2444 -1.1719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359255051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:29 Heat of formation + Delta-G solvation = -106.323208 kcal Electronic energy + Delta-G solvation = -21997.115291 eV Core-core repulsion = 19011.634186 eV Total energy + Delta-G solvation = -2985.481105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89319 -38.59036 -36.99477 -35.00807 -34.33856 -33.16854 -31.25606 -29.11705 -27.56724 -27.27910 -24.39688 -23.79042 -22.57574 -21.86510 -21.00595 -20.72403 -18.70840 -17.32598 -16.77544 -16.09845 -15.82897 -15.59531 -15.46424 -15.32493 -14.94025 -14.61449 -14.37017 -14.04410 -13.83450 -13.72996 -13.55639 -13.32343 -12.97092 -12.74746 -12.63299 -12.46958 -12.27873 -12.17325 -12.09822 -11.94605 -11.92033 -11.82669 -11.76196 -11.47644 -11.41301 -11.06291 -11.01130 -10.77248 -9.69299 -9.13229 -8.81961 -6.83725 1.49320 1.54947 1.79793 2.35989 2.46466 2.76024 3.47523 3.73005 3.84766 3.95512 4.06672 4.12414 4.17502 4.27963 4.32111 4.41944 4.43210 4.55969 4.58187 4.65076 4.71728 4.74769 4.80845 4.87406 4.95194 4.96275 4.99700 5.05120 5.09384 5.13700 5.25467 5.26700 5.31879 5.36461 5.39504 5.42242 5.46734 5.50344 5.60376 5.72134 5.81713 6.17072 6.41450 6.86495 7.46781 8.32915 8.40551 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.007777 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.435554 B = 3599.678113 C = 5239.527043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.124 4.124 4 C 0.123 3.877 5 N -0.639 5.639 6 C 0.551 3.449 7 O -0.649 6.649 8 C -0.638 4.638 9 H 0.080 0.920 10 C 0.004 3.996 11 N -0.841 5.841 12 Si 1.122 2.878 13 H -0.279 1.279 14 H -0.266 1.266 15 H -0.251 1.251 16 C 0.161 3.839 17 H 0.091 0.909 18 C -0.125 4.125 19 C -0.105 4.105 20 C -0.110 4.110 21 C -0.080 4.080 22 H 0.088 0.912 23 C -0.142 4.142 24 C -0.124 4.124 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.281 0.719 35 H 0.050 0.950 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.033 0.967 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 -6.451 -12.651 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.163 4.163 4 C 0.000 4.000 5 N -0.371 5.371 6 C 0.359 3.641 7 O -0.540 6.540 8 C -0.674 4.674 9 H 0.098 0.902 10 C -0.211 4.211 11 N -0.470 5.470 12 Si 0.939 3.061 13 H -0.204 1.204 14 H -0.191 1.191 15 H -0.175 1.175 16 C 0.058 3.942 17 H 0.109 0.891 18 C -0.163 4.163 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.099 4.099 22 H 0.106 0.894 23 C -0.199 4.199 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.541 -5.619 -11.113 13.255 hybrid contribution 0.035 0.148 -1.169 1.179 sum -4.505 -5.471 -12.283 14.181 Atomic orbital electron populations 1.21739 0.95117 1.02189 1.01479 1.21432 0.96486 0.94908 1.02515 1.21925 0.95657 0.97967 1.00731 1.21452 0.93915 0.82650 1.02018 1.47941 1.69863 1.14241 1.05075 1.18409 0.75851 0.85657 0.84220 1.90417 1.56807 1.18780 1.88038 1.22255 1.41600 1.09823 0.93702 0.90195 1.28298 0.92028 0.92674 1.08090 1.70286 1.19978 1.25045 1.31725 0.83000 0.76720 0.77146 0.69259 1.20412 1.19132 1.17545 1.20837 0.94024 0.93509 0.85860 0.89098 1.21847 0.98039 0.98022 0.98422 1.21460 0.96759 0.99971 0.96116 1.21565 0.94482 0.97178 1.01469 1.21068 0.95446 0.97227 0.96187 0.89388 1.21783 0.95649 1.00659 1.01818 1.21926 0.96045 0.99472 0.98802 0.92563 0.91210 0.93823 0.90460 0.92201 0.94716 0.92391 0.90183 0.91840 0.90634 0.93145 0.94806 0.89819 0.91449 0.89437 0.94860 0.94812 0.92819 0.90325 0.93665 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.12 -2.82 5.93 30.59 0.18 -2.64 16 3 C -0.12 -4.00 5.54 30.59 0.17 -3.83 16 4 C 0.12 4.51 5.14 86.38 0.44 4.95 16 5 N -0.64 -28.82 2.42 -802.88 -1.94 -30.77 16 6 C 0.55 31.34 6.70 86.36 0.58 31.92 16 7 O -0.65 -41.35 10.83 -4.31 -0.05 -41.39 16 8 C -0.64 -36.49 8.53 24.82 0.21 -36.28 16 9 H 0.08 4.23 6.29 -2.91 -0.02 4.21 16 10 C 0.00 0.23 5.37 85.30 0.46 0.69 16 11 N -0.84 -53.21 13.23 21.83 0.29 -52.92 16 12 Si 1.12 48.00 29.98 68.60 2.06 50.06 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 15 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 16 C 0.16 6.21 2.55 44.99 0.11 6.32 16 17 H 0.09 2.89 7.76 -2.39 -0.02 2.87 16 18 C -0.12 -4.72 5.22 30.59 0.16 -4.56 16 19 C -0.11 -2.95 5.92 30.59 0.18 -2.77 16 20 C -0.11 -3.11 5.20 30.60 0.16 -2.95 16 21 C -0.08 -2.36 2.72 -10.81 -0.03 -2.39 16 22 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 23 C -0.14 -3.84 9.20 71.98 0.66 -3.18 16 24 C -0.12 -4.94 4.31 30.58 0.13 -4.81 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.08 2.41 7.87 -2.39 -0.02 2.39 16 33 H 0.06 2.55 6.11 -2.39 -0.01 2.53 16 34 H 0.28 19.00 6.47 -92.71 -0.60 18.40 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.03 1.63 6.46 -2.39 -0.02 1.61 16 37 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.04 2.30 5.90 -2.38 -0.01 2.28 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -72.69 345.29 5.58 -67.10 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 1.09 Total: 29.90 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.14 Total: -21.99 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.66 Total: -83.69 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.05 Total: -41.39 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.06 Total: 50.06 kcal Total: -72.69 5.58 -67.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359255051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.218 kcal (2) G-P(sol) polarization free energy of solvation -72.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds