Wall clock time and date at job start Mon Mar 30 2020 01:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46992 * 2 1 4 4 C 1.53008 * 109.46955 * 120.00016 * 2 1 3 5 5 H 1.08997 * 108.44573 * 296.54023 * 4 2 1 6 6 C 1.52573 * 108.38796 * 178.91971 * 4 2 1 7 7 C 1.50758 * 109.27478 * 153.83065 * 6 4 2 8 8 C 1.53951 * 110.12994 * 92.00701 * 7 6 4 9 9 N 1.47606 * 112.07527 * 319.28366 * 8 7 6 10 10 C 1.34775 * 118.64606 * 137.90976 * 9 8 7 11 11 O 1.21278 * 119.99700 * 179.97438 * 10 9 8 12 12 C 1.50701 * 119.99848 * 0.02562 * 10 9 8 13 13 C 1.53004 * 109.46752 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47104 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99516 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00199 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99482 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47033 * 60.00116 * 18 16 14 20 20 H 1.48505 * 109.46892 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47253 * 299.99389 * 18 16 14 22 22 C 1.44581 * 122.70899 * 317.93285 * 9 8 7 23 23 C 1.47090 * 108.51210 * 54.23435 * 4 2 1 24 24 H 1.08998 * 109.47118 * 60.00070 * 1 2 3 25 25 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47384 * 300.00122 * 1 2 3 27 27 H 1.08997 * 109.47384 * 239.99878 * 2 1 3 28 28 H 1.09001 * 109.46699 * 185.89815 * 3 2 1 29 29 H 1.08988 * 109.47084 * 305.89736 * 3 2 1 30 30 H 1.09003 * 109.46899 * 65.90050 * 3 2 1 31 31 H 1.08995 * 109.49160 * 273.79112 * 6 4 2 32 32 H 1.09002 * 109.48756 * 33.86523 * 6 4 2 33 33 H 1.08994 * 109.44505 * 331.75291 * 7 6 4 34 34 H 1.09004 * 109.25746 * 212.14987 * 7 6 4 35 35 H 1.09000 * 108.94971 * 198.63401 * 8 7 6 36 36 H 1.09007 * 108.94661 * 79.92332 * 8 7 6 37 37 H 1.08995 * 109.46747 * 299.99383 * 12 10 9 38 38 H 1.08997 * 109.47303 * 59.99884 * 12 10 9 39 39 H 1.09006 * 109.47136 * 299.99803 * 13 12 10 40 40 H 1.08997 * 109.47230 * 59.99938 * 13 12 10 41 41 H 0.97006 * 120.00112 * 180.02562 * 17 16 14 42 42 H 1.08993 * 109.44771 * 210.74804 * 22 9 8 43 43 H 1.09005 * 109.45121 * 330.69375 * 22 9 8 44 44 H 1.09006 * 109.32968 * 63.63835 * 23 4 2 45 45 H 1.08997 * 109.32740 * 304.15748 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7193 -0.1598 2.1268 6 6 3.5652 -0.7306 1.2108 7 6 4.0980 -0.8201 2.6182 8 6 4.3216 -2.2927 3.0074 9 7 3.2328 -3.1653 2.5260 10 6 3.5511 -4.3618 1.9936 11 8 2.6759 -5.0984 1.5908 12 6 4.9945 -4.7848 1.9000 13 6 5.0786 -6.1733 1.2627 14 6 6.5219 -6.5967 1.1697 15 1 7.3012 -5.9408 1.5287 16 6 6.8475 -7.8208 0.6252 17 7 5.8986 -8.6191 0.1875 18 14 8.6367 -8.3452 0.5092 19 1 9.2289 -8.3890 1.8704 20 1 8.7184 -9.6929 -0.1092 21 1 9.3850 -7.3710 -0.3252 22 6 1.8388 -2.7890 2.6014 23 6 1.4270 -2.0574 1.3001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 3.1248 1.4443 -0.1056 29 1 1.5930 1.9859 -0.8324 30 1 1.7654 1.9249 0.9381 31 1 3.9092 -1.5901 0.6356 32 1 3.9227 0.1870 0.7434 33 1 3.3830 -0.3691 3.3063 34 1 5.0442 -0.2824 2.6793 35 1 4.3807 -2.3668 4.0933 36 1 5.2640 -2.6331 2.5781 37 1 5.5436 -4.0697 1.2876 38 1 5.4292 -4.8170 2.8990 39 1 4.5294 -6.8882 1.8755 40 1 4.6438 -6.1415 0.2637 41 1 6.1276 -9.4805 -0.1953 42 1 1.2277 -3.6832 2.7241 43 1 1.6873 -2.1262 3.4534 44 1 1.7575 -2.6389 0.4393 45 1 0.3420 -1.9580 1.2700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360186901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:28 Heat of formation + Delta-G solvation = -66.294027 kcal Electronic energy + Delta-G solvation = -21388.169919 eV Core-core repulsion = 18404.424609 eV Total energy + Delta-G solvation = -2983.745310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25314 -38.27990 -35.55794 -33.54435 -32.66906 -31.96552 -30.64989 -27.85936 -26.83361 -25.44197 -24.78933 -22.35946 -21.04937 -20.77055 -19.89895 -18.12280 -16.99895 -16.09997 -15.75998 -15.59988 -15.05844 -14.52504 -14.42048 -14.32071 -13.62981 -13.56904 -13.38709 -12.82820 -12.52941 -12.50144 -12.24205 -12.10923 -11.97683 -11.65563 -11.58539 -11.26231 -11.03865 -11.00061 -10.91434 -10.85120 -10.57934 -10.47982 -10.24897 -10.14016 -9.90891 -9.55864 -9.12840 -8.91588 -8.32222 -8.25216 -5.93327 -3.97726 3.28517 3.35882 3.39532 3.41182 3.44290 4.46967 4.49273 4.60760 4.69058 4.84306 5.02587 5.09754 5.13701 5.26677 5.28952 5.41399 5.44237 5.51438 5.54722 5.60482 5.61393 5.68678 5.74455 5.77888 5.85664 5.91828 5.94694 6.01580 6.09325 6.13891 6.20873 6.24505 6.26592 6.29020 6.38054 6.49741 6.90641 7.04705 7.76869 7.80072 7.90222 8.10559 8.42003 8.83810 9.10854 9.65570 11.17610 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.003957 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.939641 B = 7074.736414 C = 7202.500577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.075 4.075 5 H 0.062 0.938 6 C -0.118 4.118 7 C -0.129 4.129 8 C 0.107 3.893 9 N -0.617 5.617 10 C 0.506 3.494 11 O -0.533 6.533 12 C -0.130 4.130 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.119 3.881 23 C -0.135 4.135 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.445 21.094 4.153 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.094 4.094 5 H 0.081 0.919 6 C -0.155 4.155 7 C -0.167 4.167 8 C -0.015 4.015 9 N -0.353 5.353 10 C 0.296 3.704 11 O -0.409 6.409 12 C -0.169 4.169 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.005 4.005 23 C -0.173 4.173 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.961 20.521 3.865 22.348 hybrid contribution 0.991 -0.222 -0.064 1.017 sum -6.970 20.300 3.800 21.797 Atomic orbital electron populations 1.21950 0.95539 1.02002 1.01306 1.21260 0.95584 0.96009 0.98763 1.21916 1.01099 0.96070 1.01364 1.20125 0.95249 0.96409 0.97590 0.91945 1.21225 0.94946 1.02478 0.96864 1.21721 1.01702 0.95908 0.97415 1.21961 0.90714 0.90050 0.98813 1.47874 1.06100 1.18121 1.63176 1.21581 0.93104 0.79916 0.75753 1.90652 1.50976 1.52469 1.46780 1.21887 0.90058 1.02530 1.02463 1.18893 0.96526 0.88191 0.96388 1.21190 0.92376 1.02257 1.40718 0.92715 1.25017 0.97165 0.96659 0.95488 1.69988 1.32019 1.10017 1.40827 0.86665 0.85348 0.77726 0.78257 1.20261 1.21294 1.20263 1.21277 0.82913 0.99593 0.96668 1.21379 1.00571 0.95977 0.99418 0.93089 0.92042 0.92895 0.91284 0.92346 0.93087 0.92901 0.91382 0.91383 0.91857 0.90870 0.92277 0.89381 0.90411 0.90446 0.95902 0.95924 0.92922 0.90230 0.91632 0.91434 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.63 37.16 0.32 -0.97 16 2 C -0.10 -0.91 2.47 -90.62 -0.22 -1.13 16 3 C -0.15 -1.18 8.78 37.16 0.33 -0.85 16 4 C -0.08 -0.75 1.31 -93.67 -0.12 -0.87 16 5 H 0.06 0.58 7.36 -51.93 -0.38 0.20 16 6 C -0.12 -1.21 4.83 -28.07 -0.14 -1.35 16 7 C -0.13 -1.19 5.69 -27.36 -0.16 -1.35 16 8 C 0.11 1.25 5.95 -2.94 -0.02 1.23 16 9 N -0.62 -9.22 2.24 -172.53 -0.39 -9.61 16 10 C 0.51 10.09 7.62 -10.99 -0.08 10.00 16 11 O -0.53 -12.84 15.42 5.56 0.09 -12.75 16 12 C -0.13 -2.70 3.97 -27.88 -0.11 -2.81 16 13 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 14 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.12 1.58 5.38 -4.08 -0.02 1.56 16 23 C -0.13 -1.62 4.61 -28.58 -0.13 -1.76 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.56 6.19 -51.93 -0.32 0.24 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.46 6.22 -51.93 -0.32 0.14 16 29 H 0.05 0.38 8.14 -51.94 -0.42 -0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 32 H 0.07 0.62 5.59 -51.93 -0.29 0.33 16 33 H 0.06 0.53 7.31 -51.93 -0.38 0.15 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.06 5.82 -51.92 -0.30 0.76 16 37 H 0.08 1.49 7.41 -51.93 -0.38 1.10 16 38 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.08 1.21 7.30 -51.93 -0.38 0.83 16 43 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.79 5.85 -51.93 -0.30 0.49 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -33.06 339.87 -8.40 -41.47 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -8.05 Total: -2.84 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.89 Total: -11.21 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.35 Total: -36.58 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.06 -8.40 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360186901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.825 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds