Wall clock time and date at job start Mon Mar 30 2020 01:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46992 * 2 1 4 4 C 1.53008 * 109.46955 * 120.00016 * 2 1 3 5 5 H 1.08997 * 108.44573 * 296.54023 * 4 2 1 6 6 C 1.52573 * 108.38796 * 178.91971 * 4 2 1 7 7 C 1.50758 * 109.27478 * 153.83065 * 6 4 2 8 8 C 1.53951 * 110.12994 * 92.00701 * 7 6 4 9 9 N 1.47606 * 112.07527 * 319.28366 * 8 7 6 10 10 C 1.34775 * 118.64606 * 137.90976 * 9 8 7 11 11 O 1.21278 * 119.99700 * 179.97438 * 10 9 8 12 12 C 1.50701 * 119.99848 * 0.02562 * 10 9 8 13 13 C 1.53004 * 109.46752 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47104 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99516 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99825 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00199 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99482 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47033 * 60.00116 * 18 16 14 20 20 H 1.48505 * 109.46892 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47253 * 299.99389 * 18 16 14 22 22 C 1.44581 * 122.70899 * 317.93285 * 9 8 7 23 23 C 1.47090 * 108.51210 * 54.23435 * 4 2 1 24 24 H 1.08998 * 109.47118 * 60.00070 * 1 2 3 25 25 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47384 * 300.00122 * 1 2 3 27 27 H 1.08997 * 109.47384 * 239.99878 * 2 1 3 28 28 H 1.09001 * 109.46699 * 185.89815 * 3 2 1 29 29 H 1.08988 * 109.47084 * 305.89736 * 3 2 1 30 30 H 1.09003 * 109.46899 * 65.90050 * 3 2 1 31 31 H 1.08995 * 109.49160 * 273.79112 * 6 4 2 32 32 H 1.09002 * 109.48756 * 33.86523 * 6 4 2 33 33 H 1.08994 * 109.44505 * 331.75291 * 7 6 4 34 34 H 1.09004 * 109.25746 * 212.14987 * 7 6 4 35 35 H 1.09000 * 108.94971 * 198.63401 * 8 7 6 36 36 H 1.09007 * 108.94661 * 79.92332 * 8 7 6 37 37 H 1.08995 * 109.46747 * 299.99383 * 12 10 9 38 38 H 1.08997 * 109.47303 * 59.99884 * 12 10 9 39 39 H 1.09006 * 109.47136 * 299.99803 * 13 12 10 40 40 H 1.08997 * 109.47230 * 59.99938 * 13 12 10 41 41 H 0.97006 * 120.00112 * 180.02562 * 17 16 14 42 42 H 1.08993 * 109.44771 * 210.74804 * 22 9 8 43 43 H 1.09005 * 109.45121 * 330.69375 * 22 9 8 44 44 H 1.09006 * 109.32968 * 63.63835 * 23 4 2 45 45 H 1.08997 * 109.32740 * 304.15748 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7193 -0.1598 2.1268 6 6 3.5652 -0.7306 1.2108 7 6 4.0980 -0.8201 2.6182 8 6 4.3216 -2.2927 3.0074 9 7 3.2328 -3.1653 2.5260 10 6 3.5511 -4.3618 1.9936 11 8 2.6759 -5.0984 1.5908 12 6 4.9945 -4.7848 1.9000 13 6 5.0786 -6.1733 1.2627 14 6 6.5219 -6.5967 1.1697 15 1 7.3012 -5.9408 1.5287 16 6 6.8475 -7.8208 0.6252 17 7 5.8986 -8.6191 0.1875 18 14 8.6367 -8.3452 0.5092 19 1 9.2289 -8.3890 1.8704 20 1 8.7184 -9.6929 -0.1092 21 1 9.3850 -7.3710 -0.3252 22 6 1.8388 -2.7890 2.6014 23 6 1.4270 -2.0574 1.3001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 3.1248 1.4443 -0.1056 29 1 1.5930 1.9859 -0.8324 30 1 1.7654 1.9249 0.9381 31 1 3.9092 -1.5901 0.6356 32 1 3.9227 0.1870 0.7434 33 1 3.3830 -0.3691 3.3063 34 1 5.0442 -0.2824 2.6793 35 1 4.3807 -2.3668 4.0933 36 1 5.2640 -2.6331 2.5781 37 1 5.5436 -4.0697 1.2876 38 1 5.4292 -4.8170 2.8990 39 1 4.5294 -6.8882 1.8755 40 1 4.6438 -6.1415 0.2637 41 1 6.1276 -9.4805 -0.1953 42 1 1.2277 -3.6832 2.7241 43 1 1.6873 -2.1262 3.4534 44 1 1.7575 -2.6389 0.4393 45 1 0.3420 -1.9580 1.2700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360186901.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:27 Heat of formation + Delta-G solvation = -85.457702 kcal Electronic energy + Delta-G solvation = -21389.000918 eV Core-core repulsion = 18404.424609 eV Total energy + Delta-G solvation = -2984.576309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47439 -39.47917 -36.69791 -35.63174 -33.71831 -33.34589 -32.26048 -28.63400 -28.33694 -26.80821 -25.90917 -23.94644 -22.33652 -21.87747 -20.70939 -19.51023 -18.79423 -17.67393 -17.12720 -16.87320 -16.45031 -16.03552 -15.63514 -15.16895 -15.05306 -14.59619 -14.43638 -14.25405 -13.89759 -13.72921 -13.47770 -13.26575 -13.11574 -12.86425 -12.77808 -12.57123 -12.46351 -12.41517 -12.05778 -11.97177 -11.83371 -11.78526 -11.50139 -11.33154 -11.32549 -11.02703 -10.95150 -10.58785 -10.56668 -9.53208 -8.18203 -6.32975 1.41423 1.46475 1.54173 1.71299 2.15436 2.43365 3.14421 3.61773 3.77465 3.79326 3.94878 4.08017 4.20975 4.27002 4.38389 4.41416 4.45804 4.50088 4.53265 4.62948 4.73766 4.74881 4.83903 4.90380 4.92449 4.96684 5.04469 5.10260 5.12710 5.17130 5.22289 5.30995 5.34005 5.39125 5.46662 5.47329 5.59618 5.60825 5.63815 5.82109 5.87283 6.16755 6.41426 6.85161 7.32280 7.37691 8.94457 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.003957 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.939641 B = 7074.736414 C = 7202.500577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.073 4.073 5 H 0.085 0.915 6 C -0.118 4.118 7 C -0.121 4.121 8 C 0.096 3.904 9 N -0.601 5.601 10 C 0.502 3.498 11 O -0.591 6.591 12 C -0.116 4.116 13 C 0.045 3.955 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.262 1.262 22 C 0.114 3.886 23 C -0.126 4.126 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.101 0.899 39 H -0.020 1.020 40 H -0.022 1.022 41 H 0.263 0.737 42 H 0.052 0.948 43 H 0.104 0.896 44 H 0.025 0.975 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 24.271 5.819 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.200 4.200 4 C -0.091 4.091 5 H 0.103 0.897 6 C -0.156 4.156 7 C -0.159 4.159 8 C -0.025 4.025 9 N -0.334 5.334 10 C 0.292 3.708 11 O -0.471 6.471 12 C -0.156 4.156 13 C 0.007 3.993 14 C -0.582 4.582 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.009 4.009 23 C -0.164 4.164 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.119 0.881 39 H -0.002 1.002 40 H -0.004 1.004 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.044 0.956 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.274 23.775 5.564 25.211 hybrid contribution 0.398 -1.174 -0.587 1.372 sum -5.876 22.601 4.977 23.877 Atomic orbital electron populations 1.21934 0.95007 1.01511 1.02227 1.21239 0.96070 0.96838 0.97505 1.21874 1.01125 0.94766 1.02212 1.20109 0.95135 0.95041 0.98830 0.89666 1.21244 0.95049 1.01768 0.97525 1.21715 1.03482 0.94014 0.96646 1.22332 0.89092 0.91028 1.00088 1.47856 1.07918 1.16705 1.60895 1.21409 0.92114 0.81267 0.76016 1.90629 1.52031 1.54731 1.49728 1.21637 0.91610 0.98977 1.03332 1.18670 0.95612 0.91307 0.93721 1.21676 0.93093 1.02889 1.40566 0.90577 1.26161 1.02809 0.96696 0.94753 1.70181 1.35134 1.10597 1.41925 0.85355 0.78437 0.77253 0.79088 1.18554 1.21301 1.18619 1.21470 0.81354 0.99323 0.98724 1.21311 1.01547 0.96564 0.96982 0.92627 0.93229 0.91532 0.93516 0.92210 0.92735 0.91651 0.94773 0.89791 0.89843 0.88528 0.89932 0.89821 0.88358 0.88117 1.00157 1.00362 0.92844 0.92928 0.87748 0.95559 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.63 71.98 0.62 -1.73 16 2 C -0.10 -1.69 2.47 -10.79 -0.03 -1.71 16 3 C -0.14 -1.89 8.78 71.98 0.63 -1.26 16 4 C -0.07 -1.31 1.31 -12.77 -0.02 -1.32 16 5 H 0.09 1.21 7.36 -2.39 -0.02 1.19 16 6 C -0.12 -2.17 4.83 29.72 0.14 -2.03 16 7 C -0.12 -1.74 5.69 30.19 0.17 -1.56 16 8 C 0.10 1.95 5.95 86.49 0.51 2.46 16 9 N -0.60 -17.62 2.24 -818.15 -1.83 -19.46 16 10 C 0.50 20.80 7.62 87.66 0.67 21.47 16 11 O -0.59 -30.66 15.42 -3.02 -0.05 -30.71 16 12 C -0.12 -4.92 3.97 29.85 0.12 -4.81 16 13 C 0.04 2.58 4.26 29.85 0.13 2.70 16 14 C -0.54 -31.71 9.11 25.60 0.23 -31.47 16 15 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 16 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 17 N -0.94 -60.73 13.29 21.45 0.28 -60.44 16 18 Si 0.98 44.81 29.54 68.60 2.03 46.83 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 C 0.11 2.95 5.38 87.37 0.47 3.42 16 23 C -0.13 -3.02 4.61 29.39 0.14 -2.88 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.88 6.19 -2.38 -0.01 0.87 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.77 6.22 -2.39 -0.01 0.76 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.03 0.86 7.48 -2.39 -0.02 0.85 16 32 H 0.08 1.29 5.59 -2.39 -0.01 1.28 16 33 H 0.08 0.94 7.31 -2.39 -0.02 0.92 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.80 5.82 -2.38 -0.01 1.78 16 37 H 0.10 3.74 7.41 -2.39 -0.02 3.72 16 38 H 0.10 3.78 8.03 -2.39 -0.02 3.76 16 39 H -0.02 -1.31 8.10 -2.38 -0.02 -1.33 16 40 H -0.02 -1.45 8.10 -2.39 -0.02 -1.47 16 41 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 42 H 0.05 1.66 7.30 -2.39 -0.02 1.64 16 43 H 0.10 1.92 8.06 -2.38 -0.02 1.90 16 44 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 1.83 5.85 -2.39 -0.01 1.82 16 Total: -1.00 -77.60 339.87 5.62 -71.97 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.94 Total: 10.46 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.25 Total: -18.66 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -1.55 Total: -79.90 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -77.60 5.62 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360186901.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.484 kcal (2) G-P(sol) polarization free energy of solvation -77.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds