Wall clock time and date at job start Mon Mar 30 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 C 1.52998 * 109.47066 * 120.00320 * 2 1 3 5 5 C 1.52999 * 109.46949 * 174.20202 * 4 2 1 6 6 H 1.09007 * 109.49943 * 54.61825 * 5 4 2 7 7 C 1.53040 * 109.52653 * 174.69653 * 5 4 2 8 8 C 1.53040 * 109.54188 * 181.33209 * 7 5 4 9 9 C 1.53627 * 109.24359 * 298.51464 * 8 7 5 10 10 N 1.46930 * 108.54032 * 54.85344 * 9 8 7 11 11 C 1.34773 * 120.62509 * 126.37392 * 10 9 8 12 12 O 1.21282 * 119.99648 * 179.71989 * 11 10 9 13 13 C 1.50699 * 120.00286 * 359.71393 * 11 10 9 14 14 C 1.52997 * 109.47160 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47160 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00179 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99871 * 179.97438 * 15 14 13 18 18 N 1.31524 * 120.00309 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47023 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46955 * 299.99942 * 19 17 15 22 22 H 1.48498 * 109.46932 * 59.99955 * 19 17 15 23 23 C 1.46925 * 118.73767 * 306.09369 * 10 9 8 24 24 H 1.09007 * 109.46929 * 177.10542 * 1 2 3 25 25 H 1.08997 * 109.47492 * 297.10655 * 1 2 3 26 26 H 1.09002 * 109.47360 * 57.10770 * 1 2 3 27 27 H 1.09006 * 109.46741 * 240.00486 * 2 1 3 28 28 H 1.09001 * 109.47347 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47605 * 300.00179 * 3 2 1 30 30 H 1.09006 * 109.46944 * 60.00611 * 3 2 1 31 31 H 1.09006 * 109.47142 * 54.20736 * 4 2 1 32 32 H 1.08996 * 109.47175 * 294.20055 * 4 2 1 33 33 H 1.08997 * 109.46131 * 301.35936 * 7 5 4 34 34 H 1.09006 * 109.45742 * 61.31261 * 7 5 4 35 35 H 1.08996 * 109.49407 * 58.59016 * 8 7 5 36 36 H 1.08998 * 109.49517 * 178.65258 * 8 7 5 37 37 H 1.08999 * 109.73427 * 295.11961 * 9 8 7 38 38 H 1.08996 * 109.66266 * 174.54510 * 9 8 7 39 39 H 1.08992 * 109.47258 * 60.00314 * 13 11 10 40 40 H 1.09004 * 109.46861 * 300.00179 * 13 11 10 41 41 H 1.09000 * 109.47769 * 59.99351 * 14 13 11 42 42 H 1.09010 * 109.46875 * 300.00023 * 14 13 11 43 43 H 0.97001 * 119.99864 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.57872 * 173.65228 * 23 10 9 45 45 H 1.09000 * 109.58569 * 294.07098 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5630 -0.8487 1.1784 6 1 4.0040 0.1369 1.0290 7 6 4.0872 -1.4501 2.4844 8 6 5.6135 -1.5469 2.4271 9 6 6.0189 -2.4741 1.2712 10 7 5.3991 -1.9780 0.0348 11 6 6.1487 -1.7306 -1.0576 12 8 5.6245 -1.3261 -2.0737 13 6 7.6381 -1.9564 -1.0164 14 6 8.2455 -1.6017 -2.3751 15 6 9.7348 -1.8281 -2.3342 16 1 10.2015 -2.1886 -1.4294 17 6 10.5015 -1.5751 -3.4518 18 7 9.9332 -1.1356 -4.5535 19 14 12.3476 -1.8565 -3.4013 20 1 12.9370 -1.5120 -4.7201 21 1 12.9506 -0.9976 -2.3506 22 1 12.6226 -3.2828 -3.0929 23 6 3.9460 -1.7627 0.0102 24 1 -0.3633 -1.0264 -0.0519 25 1 -0.3634 0.4682 0.9147 26 1 -0.3634 0.5581 -0.8629 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.5944 -1.7147 1.3025 32 1 1.7639 -0.1511 2.1361 33 1 3.7948 -0.8143 3.3201 34 1 3.6651 -2.4458 2.6209 35 1 6.0351 -0.5548 2.2659 36 1 5.9878 -1.9530 3.3668 37 1 5.6715 -3.4874 1.4730 38 1 7.1034 -2.4722 1.1626 39 1 7.8408 -3.0031 -0.7896 40 1 8.0801 -1.3254 -0.2453 41 1 8.0428 -0.5549 -2.6017 42 1 7.8034 -2.2325 -3.1465 43 1 10.4727 -0.9580 -5.3399 44 1 3.6625 -1.2912 -0.9308 45 1 3.4331 -2.7192 0.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360311399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:16 Heat of formation + Delta-G solvation = -78.916731 kcal Electronic energy + Delta-G solvation = -21027.708774 eV Core-core repulsion = 18043.416103 eV Total energy + Delta-G solvation = -2984.292671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98214 -37.90513 -35.99944 -33.48294 -32.77781 -31.44177 -30.69895 -27.29168 -26.80062 -25.91639 -24.61514 -22.60988 -21.56621 -20.34838 -19.64961 -18.41321 -17.00204 -15.91791 -15.76283 -15.12990 -14.92374 -14.62569 -14.47566 -14.37528 -14.05078 -13.29716 -13.21717 -13.11457 -12.88889 -12.42142 -12.21951 -12.08005 -12.01431 -11.85020 -11.49570 -11.27905 -11.08369 -11.03664 -10.91244 -10.88526 -10.60014 -10.58473 -10.40225 -10.17130 -9.92443 -9.57027 -9.14468 -8.93904 -8.34852 -8.26977 -5.93703 -3.98166 3.26867 3.35669 3.35999 3.40568 3.42758 4.44170 4.49100 4.64579 4.72809 4.86504 4.93597 4.96332 5.05153 5.29139 5.32181 5.40934 5.44482 5.47889 5.50316 5.56291 5.61504 5.65809 5.72382 5.75393 5.80539 5.82181 5.85555 5.98039 6.00818 6.06905 6.13921 6.19049 6.25025 6.25303 6.32084 6.39622 6.81340 6.95968 7.76498 7.82957 7.89450 8.10015 8.41237 8.80671 9.10254 9.65104 11.17209 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003839 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.192929 B = 7292.414949 C = 7963.594999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.148 4.148 4 C -0.105 4.105 5 C -0.105 4.105 6 H 0.078 0.922 7 C -0.112 4.112 8 C -0.136 4.136 9 C 0.108 3.892 10 N -0.625 5.625 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.116 3.884 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.091 0.909 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 -0.205 16.218 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.206 4.206 4 C -0.143 4.143 5 C -0.124 4.124 6 H 0.096 0.904 7 C -0.150 4.150 8 C -0.174 4.174 9 C -0.015 4.015 10 N -0.361 5.361 11 C 0.302 3.698 12 O -0.411 6.411 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.213 1.213 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.007 4.007 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.293 0.071 15.447 22.452 hybrid contribution 1.015 -0.168 0.103 1.034 sum -15.278 -0.097 15.550 21.799 Atomic orbital electron populations 1.21833 0.95464 1.01493 1.01524 1.21193 0.95409 0.96694 0.98839 1.21877 1.01559 0.95789 1.01343 1.21628 0.94400 1.00418 0.97805 1.21611 0.95550 1.00087 0.95183 0.90413 1.21556 0.95442 1.00960 0.97046 1.22001 0.96251 1.00818 0.98336 1.21779 0.99291 0.96698 0.83781 1.48293 1.07361 1.67653 1.12767 1.21567 0.90609 0.75736 0.81848 1.90649 1.74347 1.44977 1.31111 1.21872 0.88611 1.02106 1.04227 1.18897 0.94258 0.97889 0.88963 1.21187 0.92567 1.44897 0.97895 0.92695 1.25026 0.98534 0.95267 0.95538 1.69995 1.35631 1.45013 1.02205 0.86657 0.85557 0.78595 0.77139 1.21291 1.20261 1.20252 1.21574 0.80992 0.98558 0.99604 0.92857 0.92962 0.92780 0.90676 0.92238 0.92838 0.93033 0.91938 0.91851 0.91993 0.91985 0.91372 0.90944 0.91865 0.89066 0.90371 0.90361 0.95878 0.95870 0.92913 0.89039 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.10 -0.99 2.80 -90.62 -0.25 -1.24 16 3 C -0.15 -1.49 8.97 37.16 0.33 -1.15 16 4 C -0.10 -0.93 4.14 -26.73 -0.11 -1.04 16 5 C -0.11 -1.11 2.21 -90.50 -0.20 -1.31 16 6 H 0.08 0.94 6.36 -51.92 -0.33 0.61 16 7 C -0.11 -1.02 5.17 -26.69 -0.14 -1.15 16 8 C -0.14 -1.32 6.10 -26.39 -0.16 -1.48 16 9 C 0.11 1.27 6.37 -3.48 -0.02 1.25 16 10 N -0.63 -9.60 2.97 -172.50 -0.51 -10.11 16 11 C 0.51 10.36 7.70 -10.99 -0.08 10.28 16 12 O -0.54 -13.03 15.39 5.56 0.09 -12.95 16 13 C -0.13 -2.69 3.98 -27.88 -0.11 -2.80 16 14 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 15 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 19 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.12 1.54 5.34 -3.71 -0.02 1.52 16 24 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.84 6.46 -51.93 -0.34 0.50 16 28 H 0.06 0.68 6.48 -51.93 -0.34 0.34 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 39 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16 40 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.09 1.43 5.61 -51.93 -0.29 1.14 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -33.22 347.88 -8.72 -41.94 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.29 Total: -3.02 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.96 Total: -10.92 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.22 Total: -37.09 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.22 -8.72 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360311399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.979 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds