Wall clock time and date at job start Mon Mar 30 2020 00:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 C 1.53005 * 109.47211 * 120.00051 * 2 1 3 5 5 C 1.52996 * 109.46843 * 67.45619 * 4 2 1 6 6 H 1.09000 * 109.70818 * 319.64800 * 5 4 2 7 7 C 1.53196 * 109.58154 * 199.28953 * 5 4 2 8 8 C 1.53046 * 109.31075 * 185.57662 * 7 5 4 9 9 C 1.53040 * 109.53541 * 61.37150 * 8 7 5 10 10 C 1.53628 * 109.24316 * 298.50926 * 9 8 7 11 11 N 1.46925 * 108.54264 * 54.85634 * 10 9 8 12 12 C 1.34776 * 120.63318 * 126.37163 * 11 10 9 13 13 O 1.21276 * 120.00232 * 175.10789 * 12 11 10 14 14 C 1.50700 * 119.99611 * 354.83627 * 12 11 10 15 15 C 1.53004 * 109.46857 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46857 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00189 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99854 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99902 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00293 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46765 * 89.99882 * 20 18 16 22 22 H 1.48495 * 109.47438 * 210.00121 * 20 18 16 23 23 H 1.48497 * 109.46764 * 330.00464 * 20 18 16 24 24 H 1.09000 * 109.47263 * 300.00056 * 1 2 3 25 25 H 1.08998 * 109.46880 * 60.00355 * 1 2 3 26 26 H 1.08997 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47263 * 239.99944 * 2 1 3 28 28 H 1.09001 * 109.47136 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46659 * 299.99747 * 3 2 1 30 30 H 1.09000 * 109.47074 * 59.99828 * 3 2 1 31 31 H 1.09002 * 109.46889 * 307.45722 * 4 2 1 32 32 H 1.09000 * 109.46825 * 187.45835 * 4 2 1 33 33 H 1.08993 * 109.50296 * 305.52944 * 7 5 4 34 34 H 1.08998 * 109.49389 * 65.60103 * 7 5 4 35 35 H 1.08999 * 109.46201 * 181.38885 * 8 7 5 36 36 H 1.08997 * 109.46406 * 301.36472 * 8 7 5 37 37 H 1.09005 * 109.50066 * 58.58259 * 9 8 7 38 38 H 1.08999 * 109.49780 * 178.65340 * 9 8 7 39 39 H 1.08999 * 109.73644 * 295.12222 * 10 9 8 40 40 H 1.08998 * 109.66476 * 174.55133 * 10 9 8 41 41 H 1.09001 * 109.46992 * 299.99801 * 14 12 11 42 42 H 1.08995 * 109.47504 * 59.99839 * 14 12 11 43 43 H 1.09001 * 109.46863 * 299.99521 * 15 14 12 44 44 H 1.08995 * 109.47488 * 59.99471 * 15 14 12 45 45 H 0.96999 * 120.00321 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6886 -2.2076 1.1591 6 1 0.6857 -2.3239 0.7485 7 6 1.7478 -2.8348 2.5556 8 6 1.5326 -4.3457 2.4413 9 6 2.6466 -4.9583 1.5892 10 6 2.5942 -4.3546 0.1774 11 7 2.6582 -2.8913 0.2923 12 6 3.5850 -2.1889 -0.3890 13 8 3.5722 -0.9766 -0.3562 14 6 4.6409 -2.9100 -1.1866 15 6 5.5605 -1.8874 -1.8572 16 6 6.6160 -2.6085 -2.6552 17 1 6.6298 -3.6881 -2.6812 18 6 7.5641 -1.8900 -3.3523 19 7 8.4855 -2.5193 -4.0484 20 14 7.5398 -0.0227 -3.3080 21 1 8.3704 0.4563 -2.1739 22 1 8.0867 0.5099 -4.5817 23 1 6.1431 0.4501 -3.1328 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.5719 -0.2902 2.1342 32 1 3.1218 -0.6072 1.3184 33 1 2.7229 -2.6389 3.0014 34 1 0.9677 -2.4022 3.1819 35 1 1.5497 -4.7912 3.4359 36 1 0.5682 -4.5408 1.9725 37 1 3.6133 -4.7423 2.0441 38 1 2.5062 -6.0374 1.5280 39 1 1.6635 -4.6424 -0.3116 40 1 3.4421 -4.7128 -0.4064 41 1 5.2273 -3.5450 -0.5225 42 1 4.1634 -3.5249 -1.9493 43 1 4.9743 -1.2521 -2.5211 44 1 6.0380 -1.2727 -1.0941 45 1 9.1523 -2.0138 -4.5391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360332148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:14 Heat of formation + Delta-G solvation = -41.444099 kcal Electronic energy + Delta-G solvation = -21963.257708 eV Core-core repulsion = 18980.589972 eV Total energy + Delta-G solvation = -2982.667736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55431 -37.22197 -35.95784 -33.45104 -32.74558 -31.70766 -30.89774 -27.10478 -26.93439 -25.89381 -24.48214 -22.46072 -21.45108 -20.20747 -19.63187 -18.50343 -17.14104 -16.24491 -15.92137 -15.13198 -14.60144 -14.55022 -14.26705 -14.15716 -13.75021 -13.45380 -13.27538 -13.01255 -12.59878 -12.48588 -12.45758 -12.11821 -11.93470 -11.64596 -11.39545 -11.26120 -11.17359 -11.01181 -10.97552 -10.68959 -10.37449 -10.18020 -10.10294 -9.96758 -9.79529 -9.70047 -9.15746 -8.49864 -8.47505 -8.21546 -6.01752 -4.00096 3.14064 3.27652 3.38319 3.45041 3.55566 4.51828 4.63356 4.68416 4.76931 4.94860 5.13761 5.24000 5.28693 5.32554 5.34008 5.37000 5.43004 5.56880 5.63333 5.70130 5.76949 5.85187 5.85748 5.90067 5.95761 5.99172 6.07973 6.08944 6.12714 6.14602 6.20490 6.22902 6.44473 6.58710 6.66208 6.74342 6.88830 7.03156 7.39138 7.46898 7.74376 7.83897 8.52348 8.74242 9.01804 9.61600 11.11236 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.006053 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.400071 B = 4624.510470 C = 5830.868793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.134 4.134 4 C -0.109 4.109 5 C 0.145 3.855 6 H 0.066 0.934 7 C -0.131 4.131 8 C -0.118 4.118 9 C -0.136 4.136 10 C 0.108 3.892 11 N -0.617 5.617 12 C 0.503 3.497 13 O -0.517 6.517 14 C -0.123 4.123 15 C 0.004 3.996 16 C -0.524 4.524 17 H 0.071 0.929 18 C 0.069 3.931 19 N -0.905 5.905 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.925 -1.860 12.920 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.191 4.191 4 C -0.146 4.146 5 C 0.042 3.958 6 H 0.084 0.916 7 C -0.169 4.169 8 C -0.156 4.156 9 C -0.174 4.174 10 C -0.016 4.016 11 N -0.353 5.353 12 C 0.294 3.706 13 O -0.394 6.394 14 C -0.162 4.162 15 C -0.034 4.034 16 C -0.562 4.562 17 H 0.089 0.911 18 C -0.132 4.132 19 N -0.544 5.544 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.770 -1.166 12.811 21.136 hybrid contribution 0.036 0.728 0.010 0.729 sum -16.734 -0.438 12.822 21.086 Atomic orbital electron populations 1.22046 0.97587 1.00668 1.00794 1.21264 0.92354 0.96482 0.99820 1.21674 1.01962 0.95768 0.99729 1.22089 1.03942 0.91773 0.96776 1.21338 0.92111 0.93001 0.89356 0.91578 1.21996 1.02394 0.95570 0.96979 1.21504 0.98705 0.95486 0.99889 1.22000 0.99668 0.99874 0.95872 1.21794 1.02845 0.79919 0.97011 1.48214 1.33583 1.06825 1.46666 1.21376 0.81849 0.88257 0.79119 1.90687 1.72963 1.13975 1.61747 1.21704 0.95389 1.00515 0.98637 1.19346 0.94193 0.94206 0.95647 1.21129 1.11157 0.94992 1.28886 0.91063 1.24969 0.95023 0.98501 0.94734 1.69912 1.16604 1.35829 1.32020 0.86798 0.79260 0.86254 0.77249 1.20328 1.21531 1.18481 0.93563 0.93408 0.93345 0.89164 0.91933 0.93874 0.94249 0.93738 0.88457 0.91539 0.91311 0.91988 0.92031 0.91312 0.90955 0.91818 0.88945 0.90010 0.90086 0.95905 0.96371 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.02 37.16 0.34 -1.52 16 2 C -0.08 -1.19 1.87 -90.62 -0.17 -1.35 16 3 C -0.13 -1.98 9.03 37.16 0.34 -1.64 16 4 C -0.11 -1.51 3.70 -26.73 -0.10 -1.61 16 5 C 0.14 1.79 2.85 -67.60 -0.19 1.59 16 6 H 0.07 0.79 6.11 -51.93 -0.32 0.47 16 7 C -0.13 -1.33 5.28 -26.61 -0.14 -1.47 16 8 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 9 C -0.14 -1.27 6.10 -26.38 -0.16 -1.43 16 10 C 0.11 1.19 6.38 -3.48 -0.02 1.17 16 11 N -0.62 -8.52 2.97 -164.95 -0.49 -9.01 16 12 C 0.50 8.84 7.07 -10.99 -0.08 8.77 16 13 O -0.52 -10.17 8.37 5.56 0.05 -10.12 16 14 C -0.12 -2.36 3.99 -27.88 -0.11 -2.47 16 15 C 0.00 0.10 3.33 -27.88 -0.09 0.00 16 16 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 20 Si 0.88 22.60 27.47 -169.99 -4.67 17.94 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.55 6.36 -51.93 -0.33 0.22 16 27 H 0.09 1.59 5.70 -51.93 -0.30 1.29 16 28 H 0.06 1.06 7.54 -51.93 -0.39 0.66 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.55 7.99 -51.93 -0.41 0.14 16 32 H 0.10 1.63 5.77 -52.24 -0.30 1.33 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.05 5.93 -51.93 -0.31 0.75 16 41 H 0.08 1.50 7.90 -51.93 -0.41 1.09 16 42 H 0.08 1.47 7.73 -51.93 -0.40 1.07 16 43 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 44 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -31.28 334.72 -8.45 -39.72 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.17 Total: -1.75 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.98 Total: -14.49 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.28 Total: -36.34 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.05 Total: -10.12 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.28 -8.45 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360332148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.720 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds