Wall clock time and date at job start Mon Mar 30 2020 01:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46724 * 2 1 4 4 C 1.52997 * 109.47169 * 174.93022 * 3 2 1 5 5 H 1.08997 * 109.58378 * 298.46998 * 4 3 2 6 6 C 1.53200 * 109.58874 * 58.89632 * 4 3 2 7 7 H 1.08993 * 109.49555 * 294.37889 * 6 4 3 8 8 C 1.53000 * 109.49436 * 54.47294 * 6 4 3 9 9 C 1.53040 * 109.31156 * 174.42226 * 6 4 3 10 10 C 1.53038 * 109.53890 * 298.63486 * 9 6 4 11 11 C 1.53192 * 109.31119 * 61.36793 * 10 9 6 12 12 N 1.46923 * 108.77470 * 305.36040 * 11 10 9 13 13 C 1.34779 * 120.63087 * 233.62983 * 12 11 10 14 14 O 1.21276 * 119.99846 * 185.34607 * 13 12 11 15 15 C 1.50696 * 119.99988 * 5.34910 * 13 12 11 16 16 C 1.52997 * 109.47228 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47452 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00212 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99877 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47044 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46856 * 119.99979 * 21 19 17 24 24 H 1.48494 * 109.47147 * 240.00158 * 21 19 17 25 25 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47758 * 300.00190 * 1 2 3 27 27 H 1.08999 * 109.47239 * 60.01231 * 1 2 3 28 28 H 1.08995 * 109.47758 * 239.99810 * 2 1 3 29 29 H 1.09004 * 109.46873 * 119.99069 * 2 1 3 30 30 H 1.09007 * 109.46995 * 294.92477 * 3 2 1 31 31 H 1.08998 * 109.47388 * 54.92471 * 3 2 1 32 32 H 1.08996 * 109.47260 * 59.99839 * 8 6 4 33 33 H 1.09003 * 109.46860 * 180.02562 * 8 6 4 34 34 H 1.08998 * 109.47144 * 299.99611 * 8 6 4 35 35 H 1.09000 * 109.45448 * 178.61503 * 9 6 4 36 36 H 1.09002 * 109.44530 * 58.65339 * 9 6 4 37 37 H 1.08995 * 109.49687 * 301.41528 * 10 9 6 38 38 H 1.09003 * 109.51872 * 181.33210 * 10 9 6 39 39 H 1.08999 * 109.58230 * 185.57488 * 11 10 9 40 40 H 1.08999 * 109.70476 * 65.22015 * 11 10 9 41 41 H 1.09002 * 109.46842 * 299.99846 * 15 13 12 42 42 H 1.08997 * 109.47097 * 59.99557 * 15 13 12 43 43 H 1.09005 * 109.47155 * 300.00339 * 16 15 13 44 44 H 1.09003 * 109.47076 * 59.99473 * 16 15 13 45 45 H 0.96996 * 119.99742 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5646 1.4446 0.1275 5 1 3.8529 0.9823 1.0715 6 6 4.1785 0.6635 -1.0388 7 1 3.8950 -0.3861 -0.9629 8 6 3.6678 1.2368 -2.3622 9 6 5.7030 0.7863 -0.9833 10 6 6.1034 2.2568 -1.1227 11 6 5.5114 3.0557 0.0426 12 7 4.0607 2.8268 0.0841 13 6 3.2013 3.8651 0.0821 14 8 2.0120 3.6681 0.2142 15 6 3.7183 5.2708 -0.0844 16 6 2.5455 6.2528 -0.0519 17 6 3.0625 7.6585 -0.2178 18 1 4.1216 7.8340 -0.3351 19 6 2.1832 8.7206 -0.2208 20 7 0.8934 8.5069 -0.0783 21 14 2.8241 10.4631 -0.4271 22 1 4.3021 10.4334 -0.5682 23 1 2.2234 11.0707 -1.6416 24 1 2.4561 11.2701 0.7639 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5136 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7526 1.9295 -0.9320 31 1 1.6042 1.9820 0.8410 32 1 3.9530 2.2861 -2.4378 33 1 4.1046 0.6805 -3.1917 34 1 2.5818 1.1517 -2.4000 35 1 6.1434 0.2112 -1.7978 36 1 6.0636 0.4005 -0.0298 37 1 5.7215 2.6501 -2.0648 38 1 7.1901 2.3414 -1.1069 39 1 5.7097 4.1174 -0.1043 40 1 5.9603 2.7264 0.9796 41 1 4.4091 5.5022 0.7264 42 1 4.2370 5.3564 -1.0392 43 1 1.8550 6.0211 -0.8629 44 1 2.0263 6.1672 0.9028 45 1 0.2748 9.2540 -0.0808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360342421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:11 Heat of formation + Delta-G solvation = -55.688708 kcal Electronic energy + Delta-G solvation = -21785.387474 eV Core-core repulsion = 18802.102045 eV Total energy + Delta-G solvation = -2983.285429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.51658 -37.53365 -35.17342 -33.41024 -33.15431 -31.42412 -30.79104 -27.84683 -26.36677 -25.65615 -24.10548 -22.80514 -21.38644 -20.79580 -19.34454 -18.08185 -16.81129 -16.04292 -15.64383 -15.29528 -15.06935 -14.42568 -14.36087 -14.19288 -13.84359 -13.33076 -13.32217 -13.03416 -12.62905 -12.20505 -12.10299 -12.05955 -11.84035 -11.62610 -11.29992 -11.13386 -10.96719 -10.95235 -10.88341 -10.87419 -10.55427 -10.48536 -10.32236 -10.13892 -9.90866 -9.52048 -9.06348 -8.36226 -8.32058 -8.20245 -5.94586 -3.98603 3.27640 3.33292 3.35540 3.40831 3.44046 4.48118 4.62778 4.72564 4.78599 5.00425 5.08846 5.19874 5.22932 5.33121 5.40130 5.40553 5.48159 5.53000 5.62442 5.68027 5.78964 5.82539 5.83478 5.88465 5.97395 6.01865 6.05483 6.10520 6.14220 6.16410 6.25168 6.25954 6.34175 6.41666 6.61227 6.73001 6.94203 7.07814 7.76852 7.87859 7.89514 8.09494 8.41572 8.85873 9.10389 9.64883 11.16418 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.004908 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.639793 B = 5703.401278 C = 6638.918292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.114 4.114 4 C 0.153 3.847 5 H 0.061 0.939 6 C -0.103 4.103 7 H 0.077 0.923 8 C -0.147 4.147 9 C -0.113 4.113 10 C -0.138 4.138 11 C 0.109 3.891 12 N -0.620 5.620 13 C 0.513 3.487 14 O -0.525 6.525 15 C -0.130 4.130 16 C 0.038 3.962 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.224 -18.099 -1.482 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.151 4.151 4 C 0.050 3.950 5 H 0.079 0.921 6 C -0.123 4.123 7 H 0.095 0.905 8 C -0.205 4.205 9 C -0.151 4.151 10 C -0.177 4.177 11 C -0.015 4.015 12 N -0.355 5.355 13 C 0.303 3.697 14 O -0.401 6.401 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.564 4.564 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.398 -18.087 -1.397 19.991 hybrid contribution 0.490 0.931 -0.139 1.061 sum 8.889 -17.157 -1.536 19.383 Atomic orbital electron populations 1.21707 0.95946 1.00654 1.02237 1.21730 0.96076 0.98110 1.00965 1.22253 0.92537 0.94651 1.05700 1.21225 0.95176 0.81906 0.96740 0.92085 1.21546 0.95107 0.99643 0.95963 0.90497 1.21890 1.01342 1.01474 0.95744 1.21539 0.95494 0.96475 1.01599 1.21973 1.00357 0.95724 0.99600 1.21671 0.80424 1.01403 0.97980 1.48293 1.06280 1.05660 1.75297 1.21467 0.86280 0.87279 0.74662 1.90672 1.16412 1.84814 1.48205 1.21903 1.02694 0.90575 1.01863 1.18892 0.91368 0.91192 0.98491 1.21264 0.93351 0.91563 1.50178 0.92655 1.25018 0.94845 0.99119 0.95367 1.70009 1.01686 1.31161 1.50003 0.86558 0.78966 0.84900 0.77678 1.19761 1.21042 1.21029 0.93460 0.92656 0.92759 0.92569 0.92797 0.90659 0.88698 0.92076 0.93291 0.92213 0.92028 0.92104 0.90960 0.91120 0.89117 0.91962 0.90576 0.90535 0.95892 0.95887 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.13 -1.55 5.37 -26.73 -0.14 -1.69 16 3 C -0.11 -1.70 2.64 -26.73 -0.07 -1.77 16 4 C 0.15 2.02 2.74 -67.60 -0.19 1.83 16 5 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.10 -1.11 2.25 -90.50 -0.20 -1.31 16 7 H 0.08 0.75 6.86 -51.93 -0.36 0.39 16 8 C -0.15 -1.74 8.19 37.16 0.30 -1.43 16 9 C -0.11 -1.05 5.43 -26.69 -0.14 -1.19 16 10 C -0.14 -1.35 5.74 -26.61 -0.15 -1.50 16 11 C 0.11 1.27 6.35 -3.71 -0.02 1.24 16 12 N -0.62 -9.19 2.41 -165.22 -0.40 -9.59 16 13 C 0.51 9.90 7.53 -10.99 -0.08 9.82 16 14 O -0.53 -11.84 11.53 5.56 0.06 -11.78 16 15 C -0.13 -2.68 3.99 -27.89 -0.11 -2.79 16 16 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 17 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.54 13.29 55.43 0.74 -26.81 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.60 6.65 -51.93 -0.35 0.26 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.29 5.52 -51.93 -0.29 1.00 16 31 H 0.09 1.71 6.24 -51.93 -0.32 1.39 16 32 H 0.06 0.82 5.97 -51.93 -0.31 0.51 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.76 6.17 -51.93 -0.32 0.44 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.45 7.72 -51.93 -0.40 1.05 16 42 H 0.08 1.46 7.91 -51.93 -0.41 1.05 16 43 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -31.97 336.03 -8.53 -40.50 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.00 Total: -1.15 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.98 Total: -12.96 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.34 Total: -36.40 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.06 Total: -11.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.97 -8.53 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360342421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.189 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds