Wall clock time and date at job start Mon Mar 30 2020 01:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46724 * 2 1 4 4 C 1.52997 * 109.47169 * 174.93022 * 3 2 1 5 5 H 1.08997 * 109.58378 * 298.46998 * 4 3 2 6 6 C 1.53200 * 109.58874 * 58.89632 * 4 3 2 7 7 H 1.08993 * 109.49555 * 294.37889 * 6 4 3 8 8 C 1.53000 * 109.49436 * 54.47294 * 6 4 3 9 9 C 1.53040 * 109.31156 * 174.42226 * 6 4 3 10 10 C 1.53038 * 109.53890 * 298.63486 * 9 6 4 11 11 C 1.53192 * 109.31119 * 61.36793 * 10 9 6 12 12 N 1.46923 * 108.77470 * 305.36040 * 11 10 9 13 13 C 1.34779 * 120.63087 * 233.62983 * 12 11 10 14 14 O 1.21276 * 119.99846 * 185.34607 * 13 12 11 15 15 C 1.50696 * 119.99988 * 5.34910 * 13 12 11 16 16 C 1.52997 * 109.47228 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47452 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00212 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99877 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00051 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47044 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46856 * 119.99979 * 21 19 17 24 24 H 1.48494 * 109.47147 * 240.00158 * 21 19 17 25 25 H 1.09007 * 109.46731 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47758 * 300.00190 * 1 2 3 27 27 H 1.08999 * 109.47239 * 60.01231 * 1 2 3 28 28 H 1.08995 * 109.47758 * 239.99810 * 2 1 3 29 29 H 1.09004 * 109.46873 * 119.99069 * 2 1 3 30 30 H 1.09007 * 109.46995 * 294.92477 * 3 2 1 31 31 H 1.08998 * 109.47388 * 54.92471 * 3 2 1 32 32 H 1.08996 * 109.47260 * 59.99839 * 8 6 4 33 33 H 1.09003 * 109.46860 * 180.02562 * 8 6 4 34 34 H 1.08998 * 109.47144 * 299.99611 * 8 6 4 35 35 H 1.09000 * 109.45448 * 178.61503 * 9 6 4 36 36 H 1.09002 * 109.44530 * 58.65339 * 9 6 4 37 37 H 1.08995 * 109.49687 * 301.41528 * 10 9 6 38 38 H 1.09003 * 109.51872 * 181.33210 * 10 9 6 39 39 H 1.08999 * 109.58230 * 185.57488 * 11 10 9 40 40 H 1.08999 * 109.70476 * 65.22015 * 11 10 9 41 41 H 1.09002 * 109.46842 * 299.99846 * 15 13 12 42 42 H 1.08997 * 109.47097 * 59.99557 * 15 13 12 43 43 H 1.09005 * 109.47155 * 300.00339 * 16 15 13 44 44 H 1.09003 * 109.47076 * 59.99473 * 16 15 13 45 45 H 0.96996 * 119.99742 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5646 1.4446 0.1275 5 1 3.8529 0.9823 1.0715 6 6 4.1785 0.6635 -1.0388 7 1 3.8950 -0.3861 -0.9629 8 6 3.6678 1.2368 -2.3622 9 6 5.7030 0.7863 -0.9833 10 6 6.1034 2.2568 -1.1227 11 6 5.5114 3.0557 0.0426 12 7 4.0607 2.8268 0.0841 13 6 3.2013 3.8651 0.0821 14 8 2.0120 3.6681 0.2142 15 6 3.7183 5.2708 -0.0844 16 6 2.5455 6.2528 -0.0519 17 6 3.0625 7.6585 -0.2178 18 1 4.1216 7.8340 -0.3351 19 6 2.1832 8.7206 -0.2208 20 7 0.8934 8.5069 -0.0783 21 14 2.8241 10.4631 -0.4271 22 1 4.3021 10.4334 -0.5682 23 1 2.2234 11.0707 -1.6416 24 1 2.4561 11.2701 0.7639 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5136 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7526 1.9295 -0.9320 31 1 1.6042 1.9820 0.8410 32 1 3.9530 2.2861 -2.4378 33 1 4.1046 0.6805 -3.1917 34 1 2.5818 1.1517 -2.4000 35 1 6.1434 0.2112 -1.7978 36 1 6.0636 0.4005 -0.0298 37 1 5.7215 2.6501 -2.0648 38 1 7.1901 2.3414 -1.1069 39 1 5.7097 4.1174 -0.1043 40 1 5.9603 2.7264 0.9796 41 1 4.4091 5.5022 0.7264 42 1 4.2370 5.3564 -1.0392 43 1 1.8550 6.0211 -0.8629 44 1 2.0263 6.1672 0.9028 45 1 0.2748 9.2540 -0.0808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360342421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:10 Heat of formation + Delta-G solvation = -73.842183 kcal Electronic energy + Delta-G solvation = -21786.174667 eV Core-core repulsion = 18802.102045 eV Total energy + Delta-G solvation = -2984.072622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74829 -38.85175 -36.29444 -35.47721 -34.30471 -32.94644 -32.19461 -29.09048 -27.52332 -27.27249 -25.33538 -24.04782 -23.00862 -21.82195 -20.64779 -19.31587 -18.62474 -17.52411 -16.97112 -16.62573 -16.36501 -16.25819 -15.50632 -15.25371 -14.87699 -14.63640 -14.43897 -14.29502 -14.12462 -13.77007 -13.64875 -13.23178 -12.96932 -12.88474 -12.81157 -12.65954 -12.42841 -12.17881 -12.07810 -11.93449 -11.89905 -11.74995 -11.55697 -11.46434 -11.27055 -11.24706 -11.07466 -10.58566 -9.84086 -9.42002 -8.18894 -6.33026 1.40940 1.42549 1.55833 1.77025 2.12361 2.42593 3.14116 3.60569 3.83540 3.91514 4.03974 4.13913 4.17523 4.21510 4.30111 4.36081 4.46288 4.51273 4.55840 4.64130 4.68780 4.71051 4.83366 4.88722 4.96716 5.02338 5.04198 5.05157 5.09142 5.13294 5.22145 5.29267 5.31997 5.34530 5.45707 5.47724 5.56066 5.60884 5.62544 5.83433 5.90517 6.17401 6.53281 6.85896 7.36546 7.40650 8.94059 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.004908 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.639793 B = 5703.401278 C = 6638.918292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.106 4.106 4 C 0.148 3.852 5 H 0.077 0.923 6 C -0.096 4.096 7 H 0.098 0.902 8 C -0.145 4.145 9 C -0.109 4.109 10 C -0.134 4.134 11 C 0.098 3.902 12 N -0.608 5.608 13 C 0.508 3.492 14 O -0.572 6.572 15 C -0.118 4.118 16 C 0.047 3.953 17 C -0.542 4.542 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.974 3.026 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.094 0.906 43 H -0.020 1.020 44 H -0.019 1.019 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.685 -19.424 -1.790 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.144 4.144 4 C 0.046 3.954 5 H 0.095 0.905 6 C -0.115 4.115 7 H 0.116 0.884 8 C -0.203 4.203 9 C -0.147 4.147 10 C -0.172 4.172 11 C -0.024 4.024 12 N -0.342 5.342 13 C 0.298 3.702 14 O -0.451 6.451 15 C -0.157 4.157 16 C 0.009 3.991 17 C -0.580 4.580 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.176 1.176 23 H -0.206 1.206 24 H -0.205 1.205 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.112 0.888 43 H -0.002 1.002 44 H -0.001 1.001 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.926 -19.450 -1.708 22.879 hybrid contribution -0.617 1.294 -0.037 1.434 sum 11.308 -18.157 -1.746 21.462 Atomic orbital electron populations 1.21728 0.96367 1.01780 1.00845 1.21667 0.95731 0.95977 1.02603 1.21991 0.94151 0.96023 1.02251 1.21434 0.93972 0.81139 0.98902 0.90469 1.21540 0.96460 0.99924 0.93609 0.88384 1.21864 1.00388 1.00550 0.97464 1.21549 0.93711 0.96171 1.03253 1.21961 1.01746 0.95764 0.97742 1.22018 0.78138 1.02019 1.00222 1.48254 1.07354 1.05411 1.73173 1.21215 0.86110 0.87891 0.75019 1.90692 1.18389 1.85451 1.50609 1.21641 1.00232 0.90290 1.03578 1.18650 0.92717 0.93255 0.94473 1.21732 0.94318 0.92146 1.49760 0.90792 1.26134 0.94900 1.04624 0.94691 1.70189 1.03527 1.32900 1.51209 0.85277 0.79283 0.78099 0.77618 1.17575 1.20599 1.20545 0.90953 0.94148 0.94180 0.90722 0.91010 0.93861 0.92754 0.94289 0.91211 0.94004 0.90133 0.90545 0.92304 0.88419 0.89454 0.89694 0.88544 0.88800 1.00190 1.00089 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.12 -2.79 5.37 30.59 0.16 -2.62 16 3 C -0.11 -3.30 2.64 30.59 0.08 -3.22 16 4 C 0.15 3.74 2.74 44.98 0.12 3.86 16 5 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 6 C -0.10 -1.80 2.25 -10.71 -0.02 -1.83 16 7 H 0.10 1.49 6.86 -2.39 -0.02 1.48 16 8 C -0.15 -3.26 8.19 71.98 0.59 -2.67 16 9 C -0.11 -1.54 5.43 30.62 0.17 -1.37 16 10 C -0.13 -2.15 5.74 30.67 0.18 -1.98 16 11 C 0.10 2.04 6.35 86.36 0.55 2.59 16 12 N -0.61 -17.77 2.41 -795.04 -1.92 -19.69 16 13 C 0.51 20.51 7.53 87.66 0.66 21.17 16 14 O -0.57 -28.03 11.53 -3.02 -0.03 -28.06 16 15 C -0.12 -4.97 3.99 29.85 0.12 -4.85 16 16 C 0.05 2.67 4.26 29.85 0.13 2.80 16 17 C -0.54 -31.48 9.11 25.60 0.23 -31.24 16 18 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 20 N -0.94 -60.47 13.29 21.45 0.28 -60.18 16 21 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 22 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.45 6.65 -2.39 -0.02 1.43 16 29 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.04 1.60 5.52 -2.38 -0.01 1.59 16 31 H 0.05 2.12 6.24 -2.39 -0.01 2.11 16 32 H 0.04 1.04 5.97 -2.39 -0.01 1.02 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 1.07 6.17 -2.39 -0.01 1.06 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.13 6.33 -2.39 -0.02 1.12 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.88 5.93 -2.39 -0.01 1.87 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 3.64 7.72 -2.39 -0.02 3.62 16 42 H 0.09 3.60 7.91 -2.39 -0.02 3.58 16 43 H -0.02 -1.32 8.10 -2.38 -0.02 -1.34 16 44 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 45 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -75.23 336.03 5.44 -69.79 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.94 Total: 13.40 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.14 Total: -22.17 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -1.63 Total: -79.87 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.03 Total: -28.06 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.23 5.44 -69.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360342421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.050 kcal (2) G-P(sol) polarization free energy of solvation -75.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds