Wall clock time and date at job start Mon Mar 30 2020 01:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46973 * 2 1 4 4 C 1.53002 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.54481 * 29.33204 * 4 3 2 6 6 C 1.52997 * 117.50152 * 243.62438 * 4 3 2 7 7 C 1.52994 * 60.00175 * 252.50566 * 6 4 3 8 8 H 1.08995 * 117.52170 * 252.51805 * 7 6 4 9 9 C 1.50703 * 117.49712 * 107.48731 * 7 6 4 10 10 O 1.21279 * 119.99926 * 291.37862 * 9 7 6 11 11 N 1.34775 * 119.99773 * 111.38262 * 9 7 6 12 12 C 1.46504 * 119.99531 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46883 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47164 * 300.00241 * 13 12 11 15 15 C 1.52999 * 109.46623 * 60.00141 * 13 12 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 17 17 C 1.50696 * 109.47055 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00290 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00258 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99506 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00308 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47155 * 59.99584 * 21 19 17 23 23 H 1.48503 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46879 * 299.99587 * 21 19 17 25 25 H 1.08995 * 109.47057 * 60.00052 * 1 2 3 26 26 H 1.09006 * 109.46931 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47285 * 300.00269 * 1 2 3 28 28 H 1.08998 * 109.47285 * 239.99731 * 2 1 3 29 29 H 1.09007 * 109.46995 * 119.99610 * 2 1 3 30 30 H 1.09008 * 109.47272 * 59.99757 * 3 2 1 31 31 H 1.08997 * 109.47673 * 299.99707 * 3 2 1 32 32 H 1.09002 * 117.49922 * 145.01491 * 6 4 3 33 33 H 1.08997 * 117.49897 * 359.97438 * 6 4 3 34 34 H 0.96992 * 120.00503 * 359.97438 * 11 9 7 35 35 H 1.09001 * 109.46891 * 60.00097 * 12 11 9 36 36 H 1.08993 * 109.47378 * 299.99469 * 12 11 9 37 37 H 1.09000 * 109.47140 * 60.00051 * 14 13 12 38 38 H 1.09001 * 109.47230 * 179.97438 * 14 13 12 39 39 H 1.09001 * 109.47375 * 300.00034 * 14 13 12 40 40 H 1.09001 * 109.47362 * 60.00551 * 15 13 12 41 41 H 1.09002 * 109.46716 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.47486 * 299.99829 * 15 13 12 43 43 H 1.08996 * 109.46952 * 300.00302 * 16 13 12 44 44 H 1.09001 * 109.46832 * 60.00321 * 16 13 12 45 45 H 0.96999 * 119.99910 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0403 0.5852 -0.4808 6 6 4.2759 2.0457 1.2167 7 6 4.2765 2.7945 -0.1175 8 1 5.2115 2.8266 -0.6766 9 6 3.4120 4.0243 -0.2256 10 8 2.2039 3.9189 -0.2168 11 7 3.9816 5.2411 -0.3320 12 6 3.1412 6.4364 -0.4376 13 6 4.0303 7.6770 -0.5452 14 6 4.9123 7.7820 0.7005 15 6 4.9150 7.5640 -1.7884 16 6 3.1527 8.9255 -0.6549 17 6 4.0284 10.1472 -0.7615 18 1 5.1034 10.0437 -0.7516 19 6 3.4573 11.3974 -0.8707 20 7 2.1483 11.5235 -0.8823 21 14 4.5428 12.9120 -1.0022 22 1 5.4008 12.8028 -2.2093 23 1 3.6910 14.1237 -1.1087 24 1 5.3995 13.0133 0.2066 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 5.2109 1.5850 1.5356 33 1 3.6504 2.4428 2.0161 34 1 4.9479 5.3254 -0.3387 35 1 2.5113 6.5171 0.4482 36 1 2.5127 6.3615 -1.3249 37 1 5.5375 6.8926 0.7791 38 1 5.5460 8.6655 0.6237 39 1 4.2820 7.8624 1.5862 40 1 4.2867 7.4893 -2.6760 41 1 5.5481 8.4480 -1.8653 42 1 5.5402 6.6746 -1.7099 43 1 2.5241 8.8508 -1.5422 44 1 2.5228 9.0057 0.2310 45 1 1.7464 12.4030 -0.9595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360611798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:34 Heat of formation + Delta-G solvation = -67.054000 kcal Electronic energy + Delta-G solvation = -20610.618810 eV Core-core repulsion = 17626.840546 eV Total energy + Delta-G solvation = -2983.778265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20882 -39.10830 -37.59271 -35.22995 -34.74609 -33.86083 -29.25329 -28.49649 -27.97084 -27.71430 -25.46057 -23.94850 -22.72267 -21.66907 -21.04426 -19.64310 -18.37678 -17.99979 -16.73360 -16.57313 -16.38997 -16.03653 -15.67688 -15.17344 -14.93441 -14.76186 -14.39148 -13.99276 -13.95140 -13.88930 -13.71462 -13.24980 -12.95736 -12.84170 -12.75943 -12.59435 -12.33780 -12.23305 -12.11370 -12.00805 -11.92460 -11.68691 -11.54451 -11.07766 -11.04654 -10.91878 -10.89306 -10.51599 -10.43797 -10.00553 -8.14681 -6.22943 1.42022 1.44316 1.51561 1.58015 2.24104 2.44781 2.90800 3.19578 3.61739 3.85872 3.96361 3.99940 4.07455 4.17051 4.22283 4.25186 4.35707 4.46241 4.66330 4.68886 4.71327 4.76882 4.88072 4.94812 4.95687 5.01690 5.03905 5.09974 5.10947 5.11417 5.20147 5.37814 5.40686 5.45118 5.48233 5.48810 5.52753 5.57391 5.67537 5.79118 5.88849 6.29315 6.65543 6.92223 7.34555 7.44985 8.97814 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038275 B = 0.003293 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.378476 B = 8500.385611 C = 8947.936590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.078 4.078 4 C -0.118 4.118 5 H 0.138 0.862 6 C -0.137 4.137 7 C -0.197 4.197 8 H 0.152 0.848 9 C 0.527 3.473 10 O -0.581 6.581 11 N -0.708 5.708 12 C 0.143 3.857 13 C -0.064 4.064 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.515 4.515 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.940 5.940 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.266 1.266 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.413 0.587 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.071 0.929 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -22.202 2.357 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.116 4.116 4 C -0.136 4.136 5 H 0.156 0.844 6 C -0.174 4.174 7 C -0.218 4.218 8 H 0.170 0.830 9 C 0.316 3.684 10 O -0.462 6.462 11 N -0.360 5.360 12 C 0.019 3.981 13 C -0.065 4.065 14 C -0.178 4.178 15 C -0.178 4.178 16 C 0.003 3.997 17 C -0.553 4.553 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.191 1.191 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.306 -22.126 2.351 23.419 hybrid contribution -0.036 1.668 -0.173 1.678 sum 7.270 -20.457 2.177 21.820 Atomic orbital electron populations 1.21778 0.96420 1.01838 1.01133 1.21557 0.95535 0.95949 1.02568 1.21130 0.92898 0.96205 1.01351 1.22543 0.94874 0.94397 1.01786 0.84430 1.23155 1.03797 1.00917 0.89576 1.22354 1.02493 0.90734 1.06208 0.83035 1.20453 0.88158 0.84806 0.75004 1.90690 1.16703 1.86918 1.51842 1.45975 1.11003 1.05244 1.73779 1.21158 0.93054 0.84254 0.99652 1.20700 0.95846 0.92771 0.97141 1.21686 0.98832 1.01709 0.95570 1.21690 0.98832 1.01610 0.95697 1.18964 0.94142 0.92455 0.94173 1.21568 0.93768 0.91491 1.48465 0.90855 1.25973 0.96109 1.02712 0.95468 1.70122 1.11432 1.24234 1.52294 0.85581 0.78542 0.78206 0.79208 1.19077 1.21704 1.19069 0.93799 0.91412 0.93685 0.91108 0.91085 0.93962 0.93306 0.84677 0.89983 0.74947 0.94024 0.93956 0.91065 0.92511 0.94616 0.94585 0.92507 0.91037 0.99761 0.99770 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.91 71.98 0.71 -2.12 16 2 C -0.12 -2.05 5.89 30.59 0.18 -1.87 16 3 C -0.08 -1.81 3.76 30.59 0.11 -1.69 16 4 C -0.12 -2.04 5.74 -10.79 -0.06 -2.11 16 5 H 0.14 1.64 8.07 -2.39 -0.02 1.62 16 6 C -0.14 -2.13 9.88 30.59 0.30 -1.83 16 7 C -0.20 -3.69 6.19 -11.54 -0.07 -3.76 16 8 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 9 C 0.53 15.17 7.59 87.66 0.67 15.83 16 10 O -0.58 -21.71 13.10 -3.03 -0.04 -21.74 16 11 N -0.71 -19.66 4.96 -463.05 -2.30 -21.96 16 12 C 0.14 5.23 4.56 86.38 0.39 5.62 16 13 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 14 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 15 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -27.76 7.65 25.60 0.20 -27.56 16 18 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 20 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 21 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.04 1.18 7.30 -2.38 -0.02 1.16 16 31 H 0.05 1.42 6.92 -2.39 -0.02 1.41 16 32 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.59 8.03 -2.39 -0.02 1.57 16 34 H 0.41 8.83 6.16 -92.71 -0.57 8.26 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 38 H 0.06 2.04 6.62 -2.39 -0.02 2.02 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 2.04 6.62 -2.39 -0.02 2.02 16 42 H 0.07 1.79 6.86 -2.39 -0.02 1.78 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -69.25 352.79 4.50 -64.76 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.37 Total: 17.25 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.15 Total: -26.61 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.01 Total: -79.34 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.04 Total: -21.74 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.25 4.50 -64.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360611798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.299 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds