Wall clock time and date at job start Mon Mar 30 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.53003 * 109.46707 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46707 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47220 * 304.99864 * 5 4 3 7 7 C 1.52999 * 109.47158 * 64.99816 * 5 4 3 8 8 C 1.53002 * 109.47122 * 182.49529 * 7 5 4 9 9 C 1.50693 * 109.47010 * 184.99867 * 5 4 3 10 10 O 1.21280 * 120.00142 * 350.78900 * 9 5 4 11 11 N 1.34784 * 120.00210 * 170.78832 * 9 5 4 12 12 C 1.46497 * 120.00118 * 176.12814 * 11 9 5 13 13 C 1.52996 * 109.47081 * 185.11963 * 12 11 9 14 14 C 1.50704 * 115.54754 * 304.99907 * 13 12 11 15 15 H 1.08003 * 120.00148 * 145.21125 * 14 13 12 16 16 C 1.37877 * 119.99900 * 325.21587 * 14 13 12 17 17 N 1.31521 * 120.00089 * 167.45447 * 16 14 13 18 18 Si 1.86799 * 120.00238 * 347.44921 * 16 14 13 19 19 H 1.48500 * 109.47222 * 95.04329 * 18 16 14 20 20 H 1.48499 * 109.47164 * 215.04723 * 18 16 14 21 21 H 1.48506 * 109.46938 * 335.04746 * 18 16 14 22 22 C 1.52999 * 117.50212 * 159.33535 * 13 12 11 23 23 C 1.52995 * 117.50512 * 90.67004 * 13 12 11 24 24 H 1.08996 * 109.47209 * 59.99741 * 1 2 3 25 25 H 1.08994 * 109.47415 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47036 * 300.00413 * 1 2 3 27 27 H 1.09002 * 109.46574 * 239.99849 * 2 1 3 28 28 H 1.08996 * 109.47209 * 120.00259 * 2 1 3 29 29 H 1.08990 * 109.46991 * 59.99914 * 3 2 1 30 30 H 1.08999 * 109.47059 * 299.99743 * 3 2 1 31 31 H 1.09001 * 109.47244 * 60.00377 * 4 3 2 32 32 H 1.08999 * 109.46968 * 299.99575 * 4 3 2 33 33 H 1.08997 * 109.47256 * 62.49611 * 7 5 4 34 34 H 1.09000 * 109.47336 * 302.49211 * 7 5 4 35 35 H 1.08995 * 109.47212 * 178.11552 * 8 7 5 36 36 H 1.08998 * 109.47126 * 58.11260 * 8 7 5 37 37 H 1.09005 * 109.46700 * 298.11424 * 8 7 5 38 38 H 0.96996 * 119.99510 * 356.12448 * 11 9 5 39 39 H 1.09004 * 109.46597 * 305.11367 * 12 11 9 40 40 H 1.08999 * 109.47314 * 65.11292 * 12 11 9 41 41 H 0.96998 * 120.00226 * 180.02562 * 17 16 14 42 42 H 1.08996 * 117.49836 * 359.97438 * 22 13 12 43 43 H 1.09003 * 117.50022 * 145.01991 * 22 13 12 44 44 H 1.08998 * 117.50067 * 214.98214 * 23 13 12 45 45 H 1.09001 * 117.49726 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6451 3.4237 -0.8431 7 6 3.6759 3.5693 1.3060 8 6 4.1316 5.0297 1.2792 9 6 5.5819 2.8866 -0.1257 10 8 6.1988 1.8461 -0.0381 11 7 6.2395 4.0445 -0.3344 12 6 7.7040 4.0588 -0.3707 13 6 8.1970 5.5020 -0.4927 14 6 7.6417 6.2824 -1.6563 15 1 7.4459 7.3395 -1.5533 16 6 7.3834 5.6467 -2.8522 17 7 6.6774 6.2541 -3.7808 18 14 8.0363 3.9227 -3.1537 19 1 6.9885 2.9289 -2.8074 20 1 8.4041 3.7759 -4.5848 21 1 9.2353 3.6926 -2.3082 22 6 9.6378 5.7946 -0.0692 23 6 8.4722 6.2666 0.8036 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 4.1467 3.0571 2.1450 34 1 2.5923 3.5289 1.4174 35 1 3.8143 5.5262 2.1962 36 1 3.6871 5.5333 0.4208 37 1 5.2181 5.0698 1.2015 38 1 5.7431 4.8682 -0.4606 39 1 8.0944 3.6178 0.5465 40 1 8.0519 3.4823 -1.2278 41 1 6.4954 5.8068 -4.6220 42 1 10.2343 4.9591 0.2967 43 1 10.1838 6.5519 -0.6319 44 1 8.2519 7.3341 0.8148 45 1 8.3016 5.7416 1.7435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404074057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:37 Heat of formation + Delta-G solvation = -34.783075 kcal Electronic energy + Delta-G solvation = -21520.130651 eV Core-core repulsion = 18537.751758 eV Total energy + Delta-G solvation = -2982.378892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70314 -37.26194 -36.19598 -34.27316 -33.19220 -32.29884 -30.36252 -27.57023 -26.39126 -25.09317 -22.84657 -21.98732 -21.48434 -20.67978 -19.62879 -18.99141 -16.99528 -16.30829 -15.75042 -15.54963 -15.30291 -14.67781 -14.05887 -13.84322 -13.60903 -13.53144 -13.22657 -13.08721 -12.84681 -12.56674 -12.39620 -12.10549 -11.92359 -11.39475 -11.26337 -11.07101 -11.02770 -10.85521 -10.66761 -10.65031 -10.56636 -10.50626 -10.27969 -9.93561 -9.66231 -9.38751 -9.10372 -8.98760 -8.45179 -8.07749 -6.28527 -4.23289 3.19587 3.29703 3.36420 3.39615 3.80838 4.30243 4.69145 4.76538 4.85996 4.95598 5.06131 5.15982 5.19783 5.30361 5.39648 5.51967 5.60626 5.64076 5.70256 5.72212 5.78049 5.83252 5.87941 5.94022 6.00112 6.04565 6.11312 6.15230 6.17202 6.21163 6.28509 6.39665 6.45630 6.49088 6.50474 6.52102 6.63849 6.83720 7.07275 7.20407 7.60708 8.25943 8.36738 8.77025 8.86933 9.36567 10.82290 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005488 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.706056 B = 5100.900082 C = 5513.417888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.098 4.098 5 C -0.110 4.110 6 H 0.094 0.906 7 C -0.110 4.110 8 C -0.175 4.175 9 C 0.510 3.490 10 O -0.561 6.561 11 N -0.701 5.701 12 C 0.136 3.864 13 C -0.006 4.006 14 C -0.491 4.491 15 H 0.080 0.920 16 C 0.086 3.914 17 N -0.883 5.883 18 Si 0.884 3.116 19 H -0.275 1.275 20 H -0.300 1.300 21 H -0.263 1.263 22 C -0.201 4.201 23 C -0.187 4.187 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.414 0.586 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.267 0.733 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.279 -6.732 8.661 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.136 4.136 5 C -0.131 4.131 6 H 0.112 0.888 7 C -0.148 4.148 8 C -0.233 4.233 9 C 0.296 3.704 10 O -0.440 6.440 11 N -0.354 5.354 12 C 0.013 3.987 13 C -0.007 4.007 14 C -0.528 4.528 15 H 0.098 0.902 16 C -0.119 4.119 17 N -0.519 5.519 18 Si 0.716 3.284 19 H -0.201 1.201 20 H -0.228 1.228 21 H -0.190 1.190 22 C -0.240 4.240 23 C -0.224 4.224 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.253 0.747 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.928 -7.439 8.524 14.412 hybrid contribution 0.274 -0.459 -0.410 0.674 sum -8.654 -7.898 8.114 14.252 Atomic orbital electron populations 1.21777 0.96121 1.01311 1.01726 1.21526 0.95511 0.97175 1.02060 1.21700 0.95407 0.96611 1.02157 1.21375 0.94401 0.94577 1.03288 1.21413 0.92687 0.98675 1.00320 0.88777 1.21492 1.01317 0.96094 0.95882 1.22169 1.03478 0.95547 1.02088 1.20577 0.89837 0.83677 0.76299 1.90619 1.69707 1.31923 1.51785 1.46319 1.07640 1.10719 1.70755 1.21296 0.80068 0.97053 1.00247 1.19525 0.94619 0.91388 0.95170 1.20317 1.42474 0.96502 0.93484 0.90176 1.24932 0.93408 0.97673 0.95886 1.69920 1.35935 1.38801 1.07215 0.87014 0.80723 0.85005 0.75676 1.20112 1.22827 1.18963 1.23103 0.92810 1.02809 1.05234 1.22828 1.05197 1.00069 0.94345 0.92792 0.93038 0.92852 0.92076 0.92099 0.91706 0.91954 0.91492 0.91310 0.91801 0.90923 0.92555 0.91996 0.90693 0.74672 0.92700 0.92388 0.92308 0.91243 0.89369 0.89786 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.12 -1.31 4.97 -26.73 -0.13 -1.44 16 4 C -0.10 -1.36 3.98 -26.73 -0.11 -1.46 16 5 C -0.11 -1.65 2.27 -91.77 -0.21 -1.86 16 6 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 7 C -0.11 -1.38 5.23 -26.73 -0.14 -1.52 16 8 C -0.18 -2.29 8.76 37.16 0.33 -1.97 16 9 C 0.51 10.03 6.90 -10.99 -0.08 9.96 16 10 O -0.56 -12.78 16.03 5.56 0.09 -12.69 16 11 N -0.70 -14.33 3.55 -60.30 -0.21 -14.55 16 12 C 0.14 3.02 4.35 -4.05 -0.02 3.01 16 13 C -0.01 -0.13 1.48 -155.66 -0.23 -0.36 16 14 C -0.49 -12.79 8.84 -34.44 -0.30 -13.09 16 15 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 16 C 0.09 2.32 5.35 -17.82 -0.10 2.23 16 17 N -0.88 -25.25 13.96 55.43 0.77 -24.47 16 18 Si 0.88 22.24 23.84 -169.99 -4.05 18.18 16 19 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 21 H -0.26 -6.48 6.41 56.52 0.36 -6.12 16 22 C -0.20 -4.11 9.96 -26.69 -0.27 -4.37 16 23 C -0.19 -3.62 9.93 -26.70 -0.27 -3.89 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.64 6.51 -51.93 -0.34 0.30 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.76 6.45 -51.93 -0.34 0.42 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.13 5.42 -51.93 -0.28 0.85 16 38 H 0.41 8.23 5.87 -40.82 -0.24 7.99 16 39 H 0.05 1.16 8.09 -51.93 -0.42 0.74 16 40 H 0.06 1.42 2.57 -51.93 -0.13 1.29 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -29.42 347.37 -7.58 -37.00 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.11 Total: 8.38 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.31 Total: -17.09 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.56 Total: -39.02 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.05 Total: 18.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.42 -7.58 -37.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404074057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.214 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds