Wall clock time and date at job start Mon Mar 30 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47192 * 2 1 4 4 C 1.53003 * 109.46707 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46707 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47220 * 304.99864 * 5 4 3 7 7 C 1.52999 * 109.47158 * 64.99816 * 5 4 3 8 8 C 1.53002 * 109.47122 * 182.49529 * 7 5 4 9 9 C 1.50693 * 109.47010 * 184.99867 * 5 4 3 10 10 O 1.21280 * 120.00142 * 350.78900 * 9 5 4 11 11 N 1.34784 * 120.00210 * 170.78832 * 9 5 4 12 12 C 1.46497 * 120.00118 * 176.12814 * 11 9 5 13 13 C 1.52996 * 109.47081 * 185.11963 * 12 11 9 14 14 C 1.50704 * 115.54754 * 304.99907 * 13 12 11 15 15 H 1.08003 * 120.00148 * 145.21125 * 14 13 12 16 16 C 1.37877 * 119.99900 * 325.21587 * 14 13 12 17 17 N 1.31521 * 120.00089 * 167.45447 * 16 14 13 18 18 Si 1.86799 * 120.00238 * 347.44921 * 16 14 13 19 19 H 1.48500 * 109.47222 * 95.04329 * 18 16 14 20 20 H 1.48499 * 109.47164 * 215.04723 * 18 16 14 21 21 H 1.48506 * 109.46938 * 335.04746 * 18 16 14 22 22 C 1.52999 * 117.50212 * 159.33535 * 13 12 11 23 23 C 1.52995 * 117.50512 * 90.67004 * 13 12 11 24 24 H 1.08996 * 109.47209 * 59.99741 * 1 2 3 25 25 H 1.08994 * 109.47415 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47036 * 300.00413 * 1 2 3 27 27 H 1.09002 * 109.46574 * 239.99849 * 2 1 3 28 28 H 1.08996 * 109.47209 * 120.00259 * 2 1 3 29 29 H 1.08990 * 109.46991 * 59.99914 * 3 2 1 30 30 H 1.08999 * 109.47059 * 299.99743 * 3 2 1 31 31 H 1.09001 * 109.47244 * 60.00377 * 4 3 2 32 32 H 1.08999 * 109.46968 * 299.99575 * 4 3 2 33 33 H 1.08997 * 109.47256 * 62.49611 * 7 5 4 34 34 H 1.09000 * 109.47336 * 302.49211 * 7 5 4 35 35 H 1.08995 * 109.47212 * 178.11552 * 8 7 5 36 36 H 1.08998 * 109.47126 * 58.11260 * 8 7 5 37 37 H 1.09005 * 109.46700 * 298.11424 * 8 7 5 38 38 H 0.96996 * 119.99510 * 356.12448 * 11 9 5 39 39 H 1.09004 * 109.46597 * 305.11367 * 12 11 9 40 40 H 1.08999 * 109.47314 * 65.11292 * 12 11 9 41 41 H 0.96998 * 120.00226 * 180.02562 * 17 16 14 42 42 H 1.08996 * 117.49836 * 359.97438 * 22 13 12 43 43 H 1.09003 * 117.50022 * 145.01991 * 22 13 12 44 44 H 1.08998 * 117.50067 * 214.98214 * 23 13 12 45 45 H 1.09001 * 117.49726 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6451 3.4237 -0.8431 7 6 3.6759 3.5693 1.3060 8 6 4.1316 5.0297 1.2792 9 6 5.5819 2.8866 -0.1257 10 8 6.1988 1.8461 -0.0381 11 7 6.2395 4.0445 -0.3344 12 6 7.7040 4.0588 -0.3707 13 6 8.1970 5.5020 -0.4927 14 6 7.6417 6.2824 -1.6563 15 1 7.4459 7.3395 -1.5533 16 6 7.3834 5.6467 -2.8522 17 7 6.6774 6.2541 -3.7808 18 14 8.0363 3.9227 -3.1537 19 1 6.9885 2.9289 -2.8074 20 1 8.4041 3.7759 -4.5848 21 1 9.2353 3.6926 -2.3082 22 6 9.6378 5.7946 -0.0692 23 6 8.4722 6.2666 0.8036 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 4.1467 3.0571 2.1450 34 1 2.5923 3.5289 1.4174 35 1 3.8143 5.5262 2.1962 36 1 3.6871 5.5333 0.4208 37 1 5.2181 5.0698 1.2015 38 1 5.7431 4.8682 -0.4606 39 1 8.0944 3.6178 0.5465 40 1 8.0519 3.4823 -1.2278 41 1 6.4954 5.8068 -4.6220 42 1 10.2343 4.9591 0.2967 43 1 10.1838 6.5519 -0.6319 44 1 8.2519 7.3341 0.8148 45 1 8.3016 5.7416 1.7435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404074057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:37 Heat of formation + Delta-G solvation = -51.057681 kcal Electronic energy + Delta-G solvation = -21520.836371 eV Core-core repulsion = 18537.751758 eV Total energy + Delta-G solvation = -2983.084612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21880 -38.89508 -37.38520 -35.51499 -34.55750 -34.36491 -31.34522 -29.10940 -27.80845 -26.81460 -23.83936 -23.23669 -22.93092 -21.69697 -21.32791 -20.60385 -18.69375 -17.96423 -17.52020 -16.92156 -16.51841 -16.14018 -15.57510 -15.11083 -14.93901 -14.85722 -14.57139 -14.45822 -14.13813 -14.02187 -13.93589 -13.41981 -13.05152 -12.93364 -12.57178 -12.40875 -12.17197 -12.16602 -12.00444 -11.85632 -11.80418 -11.68447 -11.51796 -11.46767 -11.32343 -11.24640 -10.80094 -10.69159 -10.36745 -9.78404 -8.40961 -6.34139 1.24355 1.32642 1.34374 1.66444 2.22415 2.29593 2.83982 3.44891 3.69595 3.76718 3.87524 3.95752 4.14758 4.17028 4.21391 4.29317 4.41703 4.43416 4.49096 4.49571 4.66376 4.68404 4.78464 4.83137 4.88753 4.90970 4.91962 4.95026 5.07126 5.11612 5.15629 5.20127 5.22018 5.25351 5.38635 5.44219 5.47633 5.49365 5.52662 5.56047 5.64476 6.27017 6.61620 6.72748 7.26361 7.29103 8.73779 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.005488 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.706056 B = 5100.900082 C = 5513.417888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.094 4.094 5 C -0.106 4.106 6 H 0.098 0.902 7 C -0.101 4.101 8 C -0.175 4.175 9 C 0.503 3.497 10 O -0.596 6.596 11 N -0.702 5.702 12 C 0.140 3.860 13 C -0.035 4.035 14 C -0.479 4.479 15 H 0.052 0.948 16 C 0.053 3.947 17 N -0.922 5.922 18 Si 0.929 3.071 19 H -0.289 1.289 20 H -0.306 1.306 21 H -0.255 1.255 22 C -0.194 4.194 23 C -0.159 4.159 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.416 0.584 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.267 0.733 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -6.968 10.680 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.132 4.132 5 C -0.127 4.127 6 H 0.116 0.884 7 C -0.139 4.139 8 C -0.232 4.232 9 C 0.291 3.709 10 O -0.478 6.478 11 N -0.354 5.354 12 C 0.016 3.984 13 C -0.036 4.036 14 C -0.516 4.516 15 H 0.071 0.929 16 C -0.148 4.148 17 N -0.561 5.561 18 Si 0.761 3.239 19 H -0.217 1.217 20 H -0.235 1.235 21 H -0.181 1.181 22 C -0.233 4.233 23 C -0.196 4.196 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.255 0.745 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.772 -7.663 10.560 16.301 hybrid contribution 0.573 -0.344 -0.981 1.187 sum -9.200 -8.007 9.579 15.508 Atomic orbital electron populations 1.21754 0.94761 1.01975 1.02184 1.21529 0.96676 0.96439 1.01752 1.21661 0.92816 0.97543 1.03088 1.21343 0.96620 0.93344 1.01866 1.21512 0.89122 0.99964 1.02100 0.88382 1.21489 1.03110 0.95256 0.94026 1.22150 1.01909 0.96107 1.03076 1.21445 0.91737 0.82719 0.74978 1.90592 1.70914 1.32969 1.53313 1.46376 1.07107 1.11187 1.70767 1.21161 0.81218 0.96389 0.99632 1.19430 0.96629 0.91711 0.95873 1.20422 1.41255 0.95470 0.94470 0.92938 1.25314 0.93941 0.99530 0.96023 1.69993 1.38116 1.40073 1.07891 0.86304 0.80236 0.82315 0.75002 1.21686 1.23517 1.18051 1.23141 0.91981 1.03283 1.04864 1.22863 1.02901 1.00070 0.93804 0.92736 0.92356 0.91971 0.92997 0.91938 0.89913 0.91758 0.93900 0.91835 0.91798 0.87891 0.90498 0.92232 0.92950 0.74461 0.91553 0.94822 0.92373 0.89253 0.89703 0.89511 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.13 -2.28 5.93 30.60 0.18 -2.10 16 3 C -0.11 -2.22 4.97 30.60 0.15 -2.06 16 4 C -0.09 -2.50 3.98 30.60 0.12 -2.38 16 5 C -0.11 -3.06 2.27 -11.54 -0.03 -3.09 16 6 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 7 C -0.10 -2.28 5.23 30.59 0.16 -2.12 16 8 C -0.18 -4.19 8.76 71.98 0.63 -3.56 16 9 C 0.50 19.64 6.90 87.65 0.61 20.25 16 10 O -0.60 -27.27 16.03 -3.03 -0.05 -27.32 16 11 N -0.70 -28.38 3.55 -463.07 -1.64 -30.02 16 12 C 0.14 6.05 4.35 86.38 0.38 6.43 16 13 C -0.04 -1.53 1.48 -52.93 -0.08 -1.61 16 14 C -0.48 -24.98 8.84 25.60 0.23 -24.75 16 15 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 16 C 0.05 2.88 5.35 84.65 0.45 3.33 16 17 N -0.92 -53.76 13.96 21.45 0.30 -53.46 16 18 Si 0.93 46.70 23.84 68.60 1.64 48.33 16 19 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 20 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 21 H -0.25 -12.29 6.41 99.48 0.64 -11.65 16 22 C -0.19 -7.46 9.96 30.62 0.30 -7.15 16 23 C -0.16 -5.73 9.93 30.62 0.30 -5.42 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.33 6.51 -2.39 -0.02 1.32 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.33 8.09 -2.39 -0.02 1.31 16 32 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.74 6.45 -2.39 -0.02 1.72 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.50 5.42 -2.38 -0.01 1.49 16 38 H 0.42 16.43 5.87 -92.71 -0.54 15.89 16 39 H 0.07 2.70 8.09 -2.38 -0.02 2.68 16 40 H 0.03 1.65 2.57 -2.39 -0.01 1.64 16 41 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -63.65 347.37 4.70 -58.95 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.33 Total: 29.25 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 4.12 Total: -25.72 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.34 Total: -83.48 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.64 Total: 48.33 kcal Total: -63.65 4.70 -58.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404074057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.887 kcal (2) G-P(sol) polarization free energy of solvation -63.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds