Wall clock time and date at job start Mon Mar 30 2020 00:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47352 * 2 1 4 4 C 1.53001 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46901 * 185.36125 * 4 3 2 6 6 H 1.08993 * 109.47647 * 54.62482 * 5 4 3 7 7 C 1.52992 * 109.47316 * 294.61959 * 5 4 3 8 8 C 1.53005 * 109.47227 * 294.52680 * 7 5 4 9 9 C 1.50709 * 109.46878 * 174.62011 * 5 4 3 10 10 O 1.21284 * 119.99791 * 0.02562 * 9 5 4 11 11 N 1.34776 * 120.00210 * 179.97438 * 9 5 4 12 12 C 1.46496 * 120.00165 * 180.02562 * 11 9 5 13 13 C 1.52997 * 109.47161 * 175.76564 * 12 11 9 14 14 C 1.50700 * 115.55088 * 55.41466 * 13 12 11 15 15 H 1.08000 * 119.99824 * 265.70850 * 14 13 12 16 16 C 1.37870 * 120.00029 * 85.70841 * 14 13 12 17 17 N 1.31512 * 120.00319 * 2.31767 * 16 14 13 18 18 Si 1.86807 * 119.99799 * 182.31289 * 16 14 13 19 19 H 1.48492 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46973 * 120.00223 * 18 16 14 21 21 H 1.48498 * 109.47195 * 239.99954 * 18 16 14 22 22 C 1.53006 * 117.49931 * 269.74249 * 13 12 11 23 23 C 1.53003 * 117.50039 * 201.08599 * 13 12 11 24 24 H 1.08998 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46820 * 300.00182 * 1 2 3 26 26 H 1.09005 * 109.46997 * 60.00012 * 1 2 3 27 27 H 1.09001 * 109.47257 * 240.00059 * 2 1 3 28 28 H 1.09001 * 109.47066 * 120.00502 * 2 1 3 29 29 H 1.09001 * 109.46891 * 59.99835 * 3 2 1 30 30 H 1.09001 * 109.47445 * 300.00270 * 3 2 1 31 31 H 1.09001 * 109.47123 * 65.36047 * 4 3 2 32 32 H 1.08997 * 109.46858 * 305.35775 * 4 3 2 33 33 H 1.09004 * 109.47346 * 174.52793 * 7 5 4 34 34 H 1.08998 * 109.47094 * 54.52714 * 7 5 4 35 35 H 1.09009 * 109.47103 * 183.48344 * 8 7 5 36 36 H 1.08994 * 109.47379 * 63.47842 * 8 7 5 37 37 H 1.09007 * 109.46765 * 303.47699 * 8 7 5 38 38 H 0.97002 * 119.99625 * 0.02562 * 11 9 5 39 39 H 1.09002 * 109.47252 * 295.76963 * 12 11 9 40 40 H 1.09004 * 109.46691 * 55.76511 * 12 11 9 41 41 H 0.96999 * 120.00208 * 185.00937 * 17 16 14 42 42 H 1.08997 * 117.49635 * 0.02562 * 22 13 12 43 43 H 1.09002 * 117.49869 * 145.01998 * 22 13 12 44 44 H 1.08998 * 117.49586 * 214.98201 * 23 13 12 45 45 H 1.08999 * 117.49681 * 359.97076 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0800 2.8787 0.1354 6 1 3.6398 3.3390 1.0199 7 6 3.6839 3.6792 -1.1068 8 6 4.4105 3.1157 -2.3297 9 6 5.5811 2.8683 0.2689 10 8 6.1837 1.8158 0.2569 11 7 6.2540 4.0286 0.4006 12 6 7.7132 4.0186 0.5298 13 6 8.2326 5.4574 0.5579 14 6 7.6319 6.3447 1.6176 15 1 6.7839 6.9702 1.3810 16 6 8.1650 6.3578 2.8890 17 7 9.2255 5.6307 3.1651 18 14 7.3808 7.4086 4.2197 19 1 6.2084 8.1258 3.6573 20 1 6.9385 6.5399 5.3399 21 1 8.3719 8.3950 4.7198 22 6 8.5977 6.1030 -0.7804 23 6 9.7013 5.6855 0.1948 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9338 1.0139 -0.9332 32 1 3.9330 0.8479 0.8390 33 1 3.9611 4.7243 -0.9691 34 1 2.6070 3.6058 -1.2582 35 1 4.1767 3.7240 -3.2035 36 1 4.0866 2.0897 -2.5040 37 1 5.4860 3.1321 -2.1528 38 1 5.7720 4.8704 0.4098 39 1 7.9927 3.5132 1.4542 40 1 8.1494 3.4913 -0.3187 41 1 9.5572 5.5828 4.0753 42 1 8.4675 5.5028 -1.6808 43 1 8.4038 7.1696 -0.8942 44 1 10.2329 6.4776 0.7221 45 1 10.2976 4.8105 -0.0637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404074058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:39 Heat of formation + Delta-G solvation = -72.244283 kcal Electronic energy + Delta-G solvation = -21036.817286 eV Core-core repulsion = 18052.813954 eV Total energy + Delta-G solvation = -2984.003332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02611 -38.63475 -37.39731 -35.19740 -34.58749 -33.95718 -30.94688 -28.86419 -27.64671 -26.64319 -24.37146 -23.11179 -22.81796 -21.61233 -21.29708 -19.99041 -18.23884 -17.54698 -16.99824 -16.80549 -16.52650 -16.18595 -15.67404 -15.25260 -14.85613 -14.58289 -14.37023 -14.05347 -13.96249 -13.56884 -13.51548 -13.43909 -13.08695 -12.90899 -12.85971 -12.39982 -12.31065 -12.26351 -12.03477 -11.84282 -11.79197 -11.62788 -11.43712 -11.33897 -11.20875 -10.96193 -10.65751 -10.42762 -10.03176 -9.76173 -8.10240 -6.24282 1.41742 1.45486 1.54645 1.82044 2.40703 2.47805 3.19089 3.48375 3.78493 3.83535 3.95453 4.17862 4.23398 4.24920 4.34137 4.45270 4.52975 4.57064 4.63249 4.67339 4.72323 4.79356 4.86409 4.90460 4.95543 4.99155 5.03649 5.09621 5.12761 5.19481 5.25541 5.26970 5.31694 5.33605 5.48032 5.51344 5.53722 5.61049 5.62631 5.73485 5.77589 6.36441 6.82013 6.87365 7.44965 7.47010 8.97784 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.004563 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.621896 B = 6134.650227 C = 6794.109098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.095 4.095 5 C -0.103 4.103 6 H 0.108 0.892 7 C -0.109 4.109 8 C -0.154 4.154 9 C 0.506 3.494 10 O -0.602 6.602 11 N -0.698 5.698 12 C 0.180 3.820 13 C 0.005 3.995 14 C -0.501 4.501 15 H 0.067 0.933 16 C 0.024 3.976 17 N -0.909 5.909 18 Si 0.949 3.051 19 H -0.257 1.257 20 H -0.288 1.288 21 H -0.287 1.287 22 C -0.178 4.178 23 C -0.156 4.156 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.410 0.590 39 H 0.022 0.978 40 H 0.034 0.966 41 H 0.258 0.742 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.237 -4.278 -8.212 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.124 4.124 6 H 0.126 0.874 7 C -0.147 4.147 8 C -0.212 4.212 9 C 0.294 3.706 10 O -0.484 6.484 11 N -0.347 5.347 12 C 0.055 3.945 13 C 0.004 3.996 14 C -0.539 4.539 15 H 0.085 0.915 16 C -0.176 4.176 17 N -0.546 5.546 18 Si 0.775 3.225 19 H -0.181 1.181 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.215 4.215 23 C -0.195 4.195 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.246 0.754 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.635 -4.985 -8.088 18.295 hybrid contribution 0.461 0.609 1.218 1.438 sum -15.174 -4.376 -6.871 17.222 Atomic orbital electron populations 1.21755 0.94837 1.01885 1.02189 1.21536 0.96602 0.96717 1.01647 1.21638 0.92963 0.97266 1.03064 1.21366 0.96397 0.93692 1.01880 1.21476 0.89125 0.99701 1.02081 0.87395 1.21559 1.02404 0.98815 0.91908 1.21840 0.99082 1.01651 0.98588 1.21381 0.91483 0.82934 0.74790 1.90613 1.71765 1.32618 1.53442 1.45890 1.07653 1.09183 1.71933 1.20477 0.80159 0.96697 0.97141 1.19087 0.95128 0.91616 0.93737 1.20683 1.14913 1.23664 0.94607 0.91526 1.25717 0.94601 0.96498 1.00817 1.70136 1.23283 1.41547 1.19675 0.85641 0.78825 0.78677 0.79316 1.18106 1.21424 1.21341 1.23023 1.04806 1.00452 0.93247 1.22374 0.92662 1.01236 1.03192 0.92545 0.92564 0.92073 0.92265 0.92944 0.91381 0.90191 0.92140 0.93692 0.90893 0.87905 0.90881 0.92238 0.95563 0.75426 0.95997 0.94745 0.93332 0.89612 0.89593 0.91736 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.13 -2.15 5.93 30.59 0.18 -1.97 16 3 C -0.11 -1.95 4.85 30.59 0.15 -1.81 16 4 C -0.10 -2.35 3.91 30.59 0.12 -2.23 16 5 C -0.10 -2.67 2.50 -11.54 -0.03 -2.70 16 6 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 7 C -0.11 -2.22 5.45 30.59 0.17 -2.05 16 8 C -0.15 -3.50 9.35 71.98 0.67 -2.82 16 9 C 0.51 18.81 5.57 87.66 0.49 19.30 16 10 O -0.60 -27.42 15.91 -3.04 -0.05 -27.47 16 11 N -0.70 -27.14 5.32 -463.06 -2.46 -29.61 16 12 C 0.18 8.34 5.56 86.38 0.48 8.82 16 13 C 0.01 0.23 1.60 -52.93 -0.08 0.15 16 14 C -0.50 -25.19 8.13 25.60 0.21 -24.98 16 15 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 16 C 0.02 1.27 5.42 84.65 0.46 1.73 16 17 N -0.91 -51.37 12.67 21.44 0.27 -51.10 16 18 Si 0.95 41.63 29.54 68.60 2.03 43.66 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 22 C -0.18 -7.20 9.93 30.62 0.30 -6.90 16 23 C -0.16 -7.27 9.19 30.62 0.28 -6.99 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.16 6.72 -2.39 -0.02 1.14 16 31 H 0.06 1.59 6.42 -2.39 -0.02 1.58 16 32 H 0.04 1.31 7.94 -2.39 -0.02 1.29 16 33 H 0.07 1.45 7.72 -2.39 -0.02 1.43 16 34 H 0.10 1.51 6.45 -2.39 -0.02 1.50 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.30 6.63 -2.39 -0.02 1.28 16 37 H 0.03 0.75 6.93 -2.38 -0.02 0.74 16 38 H 0.41 14.47 7.51 -92.71 -0.70 13.77 16 39 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.03 1.59 8.10 -2.38 -0.02 1.57 16 41 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 42 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -62.71 358.48 4.14 -58.57 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.24 Total: 29.69 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.11 Total: -23.75 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.19 Total: -80.71 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -62.71 4.14 -58.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404074058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.669 kcal (2) G-P(sol) polarization free energy of solvation -62.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds