Wall clock time and date at job start Mon Mar 30 2020 00:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47058 * 2 1 4 4 C 1.53000 * 109.47188 * 240.00319 * 2 1 3 5 5 C 1.52999 * 109.47583 * 120.00042 * 2 1 3 6 6 H 1.09003 * 110.43752 * 271.72044 * 5 2 1 7 7 C 1.54260 * 110.60372 * 149.10005 * 5 2 1 8 8 C 1.53880 * 106.59984 * 217.66011 * 7 5 2 9 9 C 1.54270 * 106.59686 * 359.97438 * 8 7 5 10 10 C 1.54886 * 104.19843 * 23.60958 * 9 8 7 11 11 H 1.08994 * 110.91909 * 203.66836 * 10 9 8 12 12 N 1.46502 * 110.75531 * 80.37274 * 10 9 8 13 13 C 1.34773 * 120.00020 * 113.62893 * 12 10 9 14 14 O 1.21280 * 119.99917 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99801 * 180.02562 * 13 12 10 16 16 C 1.53003 * 109.46688 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.46688 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00061 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99644 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00524 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.47222 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.46856 * 300.00204 * 21 19 17 24 24 H 1.48498 * 109.46786 * 59.99741 * 21 19 17 25 25 H 1.09003 * 109.46741 * 280.54793 * 1 2 3 26 26 H 1.08999 * 109.46943 * 40.54464 * 1 2 3 27 27 H 1.09001 * 109.46730 * 160.54986 * 1 2 3 28 28 H 1.08999 * 109.46952 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47063 * 300.00154 * 3 2 1 30 30 H 1.09000 * 109.46918 * 60.00789 * 3 2 1 31 31 H 1.09003 * 109.46749 * 278.84535 * 4 2 1 32 32 H 1.09001 * 109.47266 * 38.84626 * 4 2 1 33 33 H 1.09001 * 109.47175 * 158.85360 * 4 2 1 34 34 H 1.09003 * 110.03040 * 336.94032 * 7 5 2 35 35 H 1.08998 * 110.03612 * 98.32486 * 7 5 2 36 36 H 1.08994 * 110.03323 * 119.28221 * 8 7 5 37 37 H 1.08993 * 110.03080 * 240.66593 * 8 7 5 38 38 H 1.09005 * 110.48219 * 264.92985 * 9 8 7 39 39 H 1.09001 * 110.48561 * 142.29116 * 9 8 7 40 40 H 0.97008 * 119.99720 * 293.62964 * 12 10 9 41 41 H 1.09002 * 109.47123 * 60.00082 * 15 13 12 42 42 H 1.08999 * 109.46917 * 299.99690 * 15 13 12 43 43 H 1.08989 * 109.47571 * 60.00212 * 16 15 13 44 44 H 1.08999 * 109.47177 * 299.99516 * 16 15 13 45 45 H 0.97000 * 119.99672 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 2.1381 -0.0216 2.0793 7 6 3.3892 -1.4128 0.9639 8 6 3.3694 -2.7477 1.7291 9 6 2.0092 -2.8204 2.4532 10 6 1.0903 -1.8835 1.6305 11 1 0.2604 -1.5213 2.2372 12 7 0.5956 -2.5638 0.4310 13 6 -0.7173 -2.8422 0.3073 14 8 -1.4891 -2.5299 1.1892 15 6 -1.2260 -3.5425 -0.9263 16 6 -2.7397 -3.7359 -0.8152 17 6 -3.2486 -4.4356 -2.0491 18 1 -2.5612 -4.7141 -2.8342 19 6 -4.5917 -4.7203 -2.1758 20 7 -5.4287 -4.3816 -1.2195 21 14 -5.2226 -5.5870 -3.7056 22 1 -6.6915 -5.7759 -3.5971 23 1 -4.9159 -4.7638 -4.9028 24 1 -4.5618 -6.9108 -3.8325 25 1 -0.3633 0.1881 1.0104 26 1 -0.3633 0.7809 -0.6680 27 1 -0.3633 -0.9690 -0.3422 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8901 31 1 2.0121 -1.7982 -1.0838 32 1 1.4065 -0.4676 -2.0993 33 1 3.0648 -0.4116 -1.4546 34 1 3.4957 -1.5968 -0.1052 35 1 4.2104 -0.7902 1.3189 36 1 3.4663 -3.5794 1.0314 37 1 4.1815 -2.7736 2.4557 38 1 2.1027 -2.4598 3.4777 39 1 1.6242 -3.8401 2.4404 40 1 1.2130 -2.8139 -0.2742 41 1 -0.7410 -4.5143 -1.0186 42 1 -1.0008 -2.9390 -1.8056 43 1 -3.2244 -2.7641 -0.7232 44 1 -2.9653 -4.3392 0.0641 45 1 -6.3736 -4.5816 -1.3088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412829554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:53 Heat of formation + Delta-G solvation = -73.246390 kcal Electronic energy + Delta-G solvation = -21841.207507 eV Core-core repulsion = 18857.160720 eV Total energy + Delta-G solvation = -2984.046787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83882 -39.53340 -36.16096 -35.54596 -34.41525 -32.89958 -29.71323 -28.79788 -28.10418 -27.90515 -27.14706 -23.89269 -22.00680 -21.38834 -20.92291 -19.33179 -18.83473 -17.63473 -16.96273 -16.63396 -16.46794 -16.20833 -15.84339 -15.21596 -14.96139 -14.56312 -14.30882 -14.16978 -14.02385 -13.68834 -13.27114 -13.18344 -12.82326 -12.76262 -12.54034 -12.41800 -12.24668 -12.18100 -12.12014 -11.91172 -11.85810 -11.64555 -11.56562 -11.31660 -11.29512 -11.17790 -11.00581 -10.63173 -10.55397 -9.70983 -8.17300 -6.31520 1.41911 1.46504 1.54243 1.77133 2.30774 2.46546 3.15539 3.55494 3.68191 3.81615 4.03848 4.11375 4.21743 4.24631 4.48584 4.52247 4.54340 4.61359 4.66580 4.72734 4.75113 4.79199 4.85388 4.88407 4.92393 4.98555 5.07048 5.10920 5.13632 5.20129 5.24525 5.29135 5.36848 5.42917 5.48842 5.51437 5.57005 5.61105 5.63967 5.78180 5.86438 6.18466 6.68530 6.86809 7.38447 7.43891 8.95139 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.004393 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.466609 B = 6372.222586 C = 6675.827052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 C -0.136 4.136 4 C -0.143 4.143 5 C -0.085 4.085 6 H 0.087 0.913 7 C -0.128 4.128 8 C -0.118 4.118 9 C -0.135 4.135 10 C 0.132 3.868 11 H 0.067 0.933 12 N -0.703 5.703 13 C 0.517 3.483 14 O -0.588 6.588 15 C -0.123 4.123 16 C 0.046 3.954 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.973 3.027 22 H -0.288 1.288 23 H -0.262 1.262 24 H -0.262 1.262 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.410 0.590 41 H 0.101 0.899 42 H 0.100 0.900 43 H -0.019 1.019 44 H -0.019 1.019 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.423 7.589 1.723 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.052 4.052 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.104 4.104 6 H 0.105 0.895 7 C -0.165 4.165 8 C -0.156 4.156 9 C -0.174 4.174 10 C 0.027 3.973 11 H 0.085 0.915 12 N -0.358 5.358 13 C 0.307 3.693 14 O -0.468 6.468 15 C -0.163 4.163 16 C 0.008 3.992 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.213 1.213 23 H -0.187 1.187 24 H -0.187 1.187 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.251 0.749 41 H 0.119 0.881 42 H 0.118 0.882 43 H -0.001 1.001 44 H -0.001 1.001 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.727 7.797 2.396 24.147 hybrid contribution -1.057 -0.435 -0.444 1.227 sum 21.670 7.362 1.952 22.969 Atomic orbital electron populations 1.22275 0.96695 1.01691 1.00252 1.20399 0.93454 0.96120 0.95215 1.21908 1.01586 0.94405 1.01452 1.22194 1.01599 0.99973 0.96269 1.22414 0.94815 0.95435 0.97717 0.89500 1.22522 0.95948 0.95746 1.02253 1.22117 0.96125 0.97959 0.99372 1.22755 0.95992 0.99130 0.99515 1.21934 0.96000 0.92918 0.86451 0.91510 1.46137 1.07235 1.60097 1.22350 1.21052 0.82471 0.77432 0.88372 1.90655 1.57407 1.54658 1.44035 1.21674 0.98052 1.01372 0.95168 1.18641 0.90574 0.94669 0.95313 1.21685 0.93715 1.38248 1.04525 0.90701 1.26129 0.97431 0.96672 1.00080 1.70181 1.03707 1.48511 1.35373 0.85384 0.76823 0.79254 0.78856 1.21325 1.18688 1.18682 0.94897 0.93801 0.92808 0.90930 0.92917 0.93230 0.92044 0.93385 0.90324 0.89262 0.90319 0.91486 0.90568 0.90165 0.92695 0.74932 0.88094 0.88160 1.00054 1.00092 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 7.33 71.98 0.53 -3.78 16 2 C -0.05 -1.01 0.66 -52.18 -0.03 -1.04 16 3 C -0.14 -2.22 8.15 71.98 0.59 -1.63 16 4 C -0.14 -2.37 6.87 71.98 0.49 -1.87 16 5 C -0.08 -1.54 2.43 -9.73 -0.02 -1.56 16 6 H 0.09 1.52 7.90 -2.39 -0.02 1.50 16 7 C -0.13 -1.65 5.86 31.32 0.18 -1.47 16 8 C -0.12 -1.67 6.78 31.32 0.21 -1.46 16 9 C -0.14 -2.73 6.51 31.67 0.21 -2.53 16 10 C 0.13 3.28 2.32 46.28 0.11 3.38 16 11 H 0.07 2.16 6.59 -2.39 -0.02 2.14 16 12 N -0.70 -19.14 2.95 -436.47 -1.29 -20.42 16 13 C 0.52 20.16 5.23 87.66 0.46 20.61 16 14 O -0.59 -29.05 15.35 -3.03 -0.05 -29.10 16 15 C -0.12 -5.04 5.64 29.85 0.17 -4.87 16 16 C 0.05 2.59 4.26 29.85 0.13 2.72 16 17 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 18 H 0.07 3.92 7.74 -2.91 -0.02 3.89 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 20 N -0.94 -60.21 13.29 21.45 0.28 -59.92 16 21 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H 0.03 1.03 7.37 -2.39 -0.02 1.02 16 26 H 0.04 1.22 7.98 -2.39 -0.02 1.20 16 27 H 0.05 1.76 3.72 -2.39 -0.01 1.75 16 28 H 0.07 0.90 8.13 -2.39 -0.02 0.89 16 29 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 30 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.06 0.97 3.90 -2.39 -0.01 0.96 16 32 H 0.05 0.89 7.97 -2.39 -0.02 0.87 16 33 H 0.08 0.96 7.27 -2.39 -0.02 0.94 16 34 H 0.09 1.03 4.68 -2.39 -0.01 1.02 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.41 8.76 5.89 -92.70 -0.55 8.22 16 41 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 43 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 44 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -74.84 335.95 5.10 -69.75 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.41 Total: 17.50 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 3.71 Total: -24.48 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -1.00 Total: -80.35 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -74.84 5.10 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412829554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.500 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds