Wall clock time and date at job start Mon Mar 30 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46907 * 2 1 4 4 C 1.52999 * 109.46553 * 174.78536 * 3 2 1 5 5 H 1.09000 * 109.47604 * 305.89986 * 4 3 2 6 6 C 1.53002 * 109.47404 * 65.90401 * 4 3 2 7 7 C 1.52998 * 109.47430 * 186.49254 * 6 4 3 8 8 C 1.54265 * 110.48679 * 185.21914 * 7 6 4 9 9 C 1.53870 * 106.64007 * 217.73775 * 8 7 6 10 10 C 1.54263 * 106.59962 * 359.97438 * 9 8 7 11 11 C 1.54887 * 104.19716 * 23.61149 * 10 9 8 12 12 C 1.50706 * 109.46800 * 185.89909 * 4 3 2 13 13 O 1.21281 * 119.99928 * 240.00380 * 12 4 3 14 14 N 1.34776 * 119.99697 * 60.00420 * 12 4 3 15 15 C 1.46499 * 119.99993 * 179.97438 * 14 12 4 16 16 C 1.50695 * 109.47221 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00122 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00121 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99915 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00205 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46921 * 90.00340 * 20 18 16 22 22 H 1.48497 * 109.47091 * 209.99926 * 20 18 16 23 23 H 1.48492 * 109.47243 * 330.00479 * 20 18 16 24 24 H 1.09006 * 109.46666 * 299.99702 * 1 2 3 25 25 H 1.09000 * 109.47310 * 59.99294 * 1 2 3 26 26 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46666 * 240.00298 * 2 1 3 28 28 H 1.09000 * 109.47310 * 120.00706 * 2 1 3 29 29 H 1.08992 * 109.46944 * 54.79071 * 3 2 1 30 30 H 1.08993 * 109.47367 * 294.78576 * 3 2 1 31 31 H 1.09003 * 109.46874 * 66.48980 * 6 4 3 32 32 H 1.08997 * 109.46861 * 306.49318 * 6 4 3 33 33 H 1.08997 * 110.54008 * 307.83742 * 7 6 4 34 34 H 1.08997 * 110.02982 * 98.42779 * 8 7 6 35 35 H 1.08998 * 110.03109 * 337.04440 * 8 7 6 36 36 H 1.09003 * 110.03477 * 119.26241 * 9 8 7 37 37 H 1.09002 * 110.03259 * 240.69169 * 9 8 7 38 38 H 1.09005 * 110.48916 * 142.28911 * 10 9 8 39 39 H 1.09000 * 110.48574 * 264.79829 * 10 9 8 40 40 H 1.09001 * 110.75744 * 80.36761 * 11 10 9 41 41 H 1.09003 * 110.75663 * 203.55990 * 11 10 9 42 42 H 0.96996 * 120.00163 * 359.97438 * 14 12 4 43 43 H 1.08999 * 109.47092 * 299.99942 * 15 14 12 44 44 H 1.09005 * 109.47116 * 59.99571 * 15 14 12 45 45 H 0.96997 * 120.00187 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5644 1.4444 0.1311 5 1 3.8543 0.8678 1.0095 6 6 4.1846 0.8165 -1.1187 7 6 5.6946 0.6703 -0.9203 8 6 6.3623 0.1606 -2.2142 9 6 7.4743 -0.8115 -1.7828 10 6 7.4447 -0.8588 -0.2412 11 6 6.0012 -0.4326 0.1243 12 6 4.0542 2.8622 0.2768 13 8 4.8235 3.3248 -0.5387 14 7 3.6373 3.6160 1.3133 15 6 4.1139 4.9940 1.4553 16 6 3.5025 5.6127 2.6859 17 1 2.8269 5.0370 3.3010 18 6 3.8065 6.9136 3.0271 19 7 4.6296 7.6147 2.2784 20 14 3.0492 7.6803 4.5529 21 1 3.9303 7.4302 5.7219 22 1 2.9002 9.1437 4.3496 23 1 1.7153 7.0765 4.8003 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6025 1.9825 0.8396 30 1 1.7550 1.9287 -0.9329 31 1 3.9915 1.4556 -1.9803 32 1 3.7437 -0.1656 -1.2888 33 1 6.1336 1.6193 -0.6127 34 1 6.7908 0.9963 -2.7674 35 1 5.6305 -0.3598 -2.8320 36 1 7.2817 -1.8038 -2.1906 37 1 8.4425 -0.4475 -2.1266 38 1 7.6453 -1.8698 0.1135 39 1 8.1685 -0.1586 0.1759 40 1 5.3118 -1.2698 0.0148 41 1 5.9615 -0.0314 1.1370 42 1 3.0217 3.2462 1.9653 43 1 5.1998 4.9951 1.5489 44 1 3.8244 5.5709 0.5769 45 1 4.8438 8.5297 2.5186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427623994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:47 Heat of formation + Delta-G solvation = -93.007656 kcal Electronic energy + Delta-G solvation = -20997.331188 eV Core-core repulsion = 18012.427488 eV Total energy + Delta-G solvation = -2984.903700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.60589 -37.76594 -35.69648 -34.17346 -32.28289 -32.13355 -29.17851 -28.55057 -27.10992 -25.04356 -23.71034 -21.99991 -20.98027 -20.33514 -19.63242 -19.17938 -16.99418 -15.98675 -15.57965 -15.45035 -15.06615 -14.72131 -14.39782 -14.02665 -13.73035 -13.44296 -13.25656 -12.92389 -12.60829 -12.39682 -12.00230 -11.79702 -11.68643 -11.57086 -11.19659 -11.12633 -11.01589 -10.95994 -10.92748 -10.86463 -10.63859 -10.47810 -10.30509 -10.22906 -10.11456 -10.10463 -9.37134 -8.78509 -8.70421 -7.81155 -6.15153 -4.21812 3.24712 3.30884 3.33292 3.45038 4.15591 4.39786 4.65354 4.74460 4.83044 4.93029 4.96862 5.06525 5.20943 5.25169 5.38264 5.47968 5.52179 5.61728 5.67995 5.71316 5.73400 5.79658 5.82433 5.85530 5.87824 5.93430 6.00214 6.06212 6.10424 6.17299 6.21553 6.27508 6.31720 6.39416 6.44930 6.57599 6.81067 7.34729 7.50817 7.55139 7.69876 7.99779 8.69088 8.81726 9.18116 9.45264 10.95087 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.004648 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.807676 B = 6022.519442 C = 7201.762926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.109 4.109 5 H 0.090 0.910 6 C -0.087 4.087 7 C -0.096 4.096 8 C -0.118 4.118 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.122 4.122 12 C 0.502 3.498 13 O -0.553 6.553 14 N -0.714 5.714 15 C 0.250 3.750 16 C -0.542 4.542 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.389 0.611 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -18.338 -4.933 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.131 4.131 5 H 0.108 0.892 6 C -0.125 4.125 7 C -0.115 4.115 8 C -0.156 4.156 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.159 4.159 12 C 0.287 3.713 13 O -0.432 6.432 14 N -0.362 5.362 15 C 0.129 3.871 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.221 0.779 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.726 -17.776 -5.531 18.697 hybrid contribution -0.629 0.417 1.189 1.408 sum -2.355 -17.359 -4.342 18.048 Atomic orbital electron populations 1.21784 0.96014 1.01265 1.01989 1.21575 0.95643 0.96712 1.02055 1.21600 0.93335 0.97095 1.02968 1.21439 0.96187 0.94832 1.00641 0.89177 1.21431 0.94508 0.99697 0.96861 1.22154 0.95330 0.99533 0.94436 1.22148 0.97204 0.98432 0.97775 1.22120 0.98895 0.99157 0.95944 1.22337 0.97536 1.00673 0.95711 1.22616 0.96025 0.98218 0.99078 1.20467 0.81607 0.87397 0.81878 1.90621 1.36063 1.73853 1.42692 1.46485 1.47324 1.16184 1.26159 1.19067 0.95336 0.75783 0.96905 1.21236 1.28855 0.98248 1.09714 0.91984 1.24949 0.94989 0.96878 0.97175 1.69976 1.34141 1.10172 1.38049 0.86433 0.79513 0.78455 0.82625 1.20476 1.21015 1.19752 0.92628 0.92786 0.93031 0.91813 0.91977 0.91285 0.91491 0.91351 0.91836 0.88759 0.91975 0.92297 0.92383 0.92286 0.92250 0.91756 0.91881 0.91892 0.77869 0.95695 0.95680 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.20 5.59 -26.73 -0.15 -1.35 16 3 C -0.11 -1.38 4.63 -26.73 -0.12 -1.50 16 4 C -0.11 -1.55 2.13 -91.77 -0.20 -1.75 16 5 H 0.09 1.17 7.31 -51.93 -0.38 0.79 16 6 C -0.09 -1.16 3.57 -26.73 -0.10 -1.26 16 7 C -0.10 -1.33 2.61 -88.92 -0.23 -1.57 16 8 C -0.12 -1.45 6.37 -25.62 -0.16 -1.61 16 9 C -0.12 -1.33 6.80 -25.62 -0.17 -1.50 16 10 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 11 C -0.12 -1.44 5.65 -24.70 -0.14 -1.58 16 12 C 0.50 9.90 6.82 -10.98 -0.07 9.82 16 13 O -0.55 -13.00 14.13 5.56 0.08 -12.93 16 14 N -0.71 -15.09 5.40 -61.47 -0.33 -15.42 16 15 C 0.25 6.67 5.43 -5.20 -0.03 6.65 16 16 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 20 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.59 6.71 -51.93 -0.35 0.24 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.87 7.40 -51.93 -0.38 0.48 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 33 H 0.09 1.67 6.10 -51.93 -0.32 1.35 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 41 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 42 H 0.39 7.15 7.67 -40.82 -0.31 6.84 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -30.72 351.48 -9.16 -39.87 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.32 Total: 4.46 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.60 Total: -11.67 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.40 Total: -40.96 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.72 -9.16 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427623994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.134 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds